Wall clock time and date at job start Tue Mar 31 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39586 * 120.10776 * 352.23981 * 3 2 1 5 5 C 1.38002 * 119.99598 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.21780 * 359.73926 * 5 4 3 7 7 C 1.38947 * 120.21480 * 0.51486 * 6 5 4 8 8 N 1.39943 * 119.99996 * 179.76680 * 7 6 5 9 9 C 1.34779 * 119.99961 * 214.89170 * 8 7 6 10 10 O 1.21289 * 120.00190 * 355.15505 * 9 8 7 11 11 C 1.50698 * 120.00178 * 175.15484 * 9 8 7 12 12 C 1.52997 * 109.47237 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.47230 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99811 * 1.61657 * 13 12 11 15 15 N 1.34772 * 120.00024 * 181.61863 * 13 12 11 16 16 C 1.46497 * 119.99826 * 184.15718 * 15 13 12 17 17 C 1.50703 * 109.46986 * 269.99478 * 16 15 13 18 18 H 1.07998 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00247 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99911 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00275 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46762 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46952 * 120.00171 * 21 19 17 24 24 H 1.48499 * 109.47011 * 240.00145 * 21 19 17 25 25 C 1.39925 * 120.00068 * 4.15052 * 15 13 12 26 26 C 1.38869 * 120.06778 * 68.09289 * 25 15 13 27 27 C 1.38115 * 119.93056 * 179.97438 * 26 25 15 28 28 C 1.38287 * 120.06804 * 359.97222 * 27 26 25 29 29 C 1.38278 * 120.14082 * 0.05158 * 28 27 26 30 30 C 1.38109 * 120.07094 * 359.94801 * 29 28 27 31 31 C 1.38639 * 119.99951 * 359.48632 * 7 6 5 32 32 H 4.52045 * 14.03224 * 359.97438 * 4 2 1 33 33 H 1.08000 * 120.00487 * 359.95589 * 4 3 2 34 34 H 1.08002 * 119.89195 * 180.02562 * 5 4 3 35 35 H 1.08004 * 119.89679 * 180.25804 * 6 5 4 36 36 H 0.96997 * 120.00535 * 34.89492 * 8 7 6 37 37 H 1.09002 * 109.47472 * 60.00077 * 11 9 8 38 38 H 1.08994 * 109.47157 * 300.00185 * 11 9 8 39 39 H 1.08999 * 109.46960 * 60.00207 * 12 11 9 40 40 H 1.09003 * 109.47235 * 299.99976 * 12 11 9 41 41 H 1.08997 * 109.47467 * 29.99755 * 16 15 13 42 42 H 1.09001 * 109.47406 * 149.99978 * 16 15 13 43 43 H 0.97005 * 120.00350 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03734 * 359.70078 * 26 25 15 45 45 H 1.08001 * 119.96597 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.92937 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.96803 * 179.97438 * 29 28 27 48 48 H 1.08011 * 120.03516 * 179.97438 * 30 29 28 49 49 H 1.08008 * 120.10919 * 180.23038 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3068 -1.1955 0.1631 5 6 4.6868 -1.1923 0.1622 6 6 5.3796 -0.0079 -0.0052 7 6 4.6912 1.1887 -0.1630 8 7 5.3972 2.3857 -0.3273 9 6 4.9135 3.5304 0.1947 10 8 3.8253 3.5405 0.7301 11 6 5.7249 4.7977 0.1132 12 6 4.9531 5.9409 0.7751 13 6 5.7648 7.2081 0.6941 14 8 6.8405 7.2045 0.1337 15 7 5.2955 8.3453 1.2444 16 6 6.0405 9.5969 1.0872 17 6 7.0167 9.7467 2.2256 18 1 7.0764 8.9855 2.9894 19 6 7.8342 10.8549 2.2914 20 7 7.7619 11.7815 1.3610 21 14 9.0447 11.0402 3.7020 22 1 8.9310 9.8697 4.6087 23 1 10.4261 11.1154 3.1622 24 1 8.7396 12.2826 4.4560 25 6 4.0966 8.3306 1.9657 26 6 4.0244 7.6644 3.1820 27 6 2.8397 7.6522 3.8918 28 6 1.7263 8.3029 3.3928 29 6 1.7947 8.9668 2.1817 30 6 2.9764 8.9828 1.4671 31 6 3.3048 1.1958 -0.1635 32 1 -1.0500 -0.0010 0.0006 33 1 2.7690 -2.1235 0.2902 34 1 5.2273 -2.1189 0.2880 35 1 6.4597 -0.0120 -0.0093 36 1 6.2345 2.3918 -0.8168 37 1 5.9112 5.0432 -0.9324 38 1 6.6751 4.6545 0.6276 39 1 4.7665 5.6957 1.8206 40 1 4.0031 6.0839 0.2602 41 1 6.5838 9.5801 0.1425 42 1 5.3455 10.4365 1.0918 43 1 8.3368 12.5615 1.4074 44 1 4.8925 7.1526 3.5704 45 1 2.7829 7.1339 4.8376 46 1 0.8009 8.2916 3.9495 47 1 0.9233 9.4738 1.7944 48 1 3.0291 9.5011 0.5210 49 1 2.7678 2.1244 -0.2898 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071185879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:02 Heat of formation + Delta-G solvation = 40.259335 kcal Electronic energy + Delta-G solvation = -32445.972872 eV Core-core repulsion = 28111.553793 eV Total energy + Delta-G solvation = -4334.419079 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.85298 -39.91008 -38.86457 -38.06676 -35.35937 -34.91246 -33.69132 -33.01583 -32.50870 -30.67806 -30.59095 -29.86609 -29.34629 -27.51382 -25.48803 -23.84537 -23.21191 -22.64356 -22.25089 -21.84894 -20.43427 -19.47439 -18.93937 -17.71635 -17.10271 -16.67404 -16.54864 -16.41822 -16.05886 -15.90269 -15.45969 -15.19728 -14.88687 -14.78829 -14.32895 -14.25311 -14.09409 -13.85512 -13.67601 -13.46664 -13.11895 -12.82144 -12.75788 -12.29849 -12.26513 -12.18325 -11.97416 -11.93512 -11.56529 -11.46830 -11.20939 -11.15942 -10.91279 -10.83351 -10.81598 -10.66633 -10.49711 -10.19752 -9.95381 -9.72924 -9.34035 -8.91959 -8.64083 -8.55224 -8.45969 -8.44201 -7.68651 -6.08007 -4.12114 0.60558 1.02833 1.60855 1.69493 2.33093 2.45434 2.71320 2.83638 3.23663 3.28267 3.35550 3.40065 3.71997 3.76992 3.97144 4.07902 4.42096 4.48476 4.61952 4.77075 4.85162 4.94512 5.10689 5.12116 5.17798 5.21642 5.22427 5.24351 5.27680 5.39174 5.41697 5.64574 5.72300 5.78956 5.85540 5.90631 5.93712 6.01115 6.03276 6.09286 6.15536 6.21355 6.29958 6.64146 6.67639 6.77419 6.82813 6.97275 7.07997 7.21512 7.26437 7.32769 7.46089 7.87496 7.88357 8.16424 8.31121 8.80802 8.95621 9.52327 11.00420 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002110 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.285637 B =13265.127146 C =14981.517785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C 0.024 3.976 4 C -0.114 4.114 5 C -0.100 4.100 6 C -0.137 4.137 7 C 0.150 3.850 8 N -0.678 5.678 9 C 0.516 3.484 10 O -0.517 6.517 11 C -0.122 4.122 12 C -0.126 4.126 13 C 0.513 3.487 14 O -0.531 6.531 15 N -0.560 5.560 16 C 0.248 3.752 17 C -0.523 4.523 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.163 3.837 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.133 4.133 29 C -0.110 4.110 30 C -0.125 4.125 31 C -0.098 4.098 32 H 0.225 0.775 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.415 0.585 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.263 0.737 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 -22.703 -2.840 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C 0.024 3.976 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.157 4.157 7 C 0.056 3.944 8 N -0.323 5.323 9 C 0.304 3.696 10 O -0.391 6.391 11 C -0.162 4.162 12 C -0.167 4.167 13 C 0.301 3.699 14 O -0.408 6.408 15 N -0.288 5.288 16 C 0.130 3.870 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.209 1.209 25 C 0.071 3.929 26 C -0.141 4.141 27 C -0.127 4.127 28 C -0.151 4.151 29 C -0.129 4.129 30 C -0.144 4.144 31 C -0.118 4.118 32 H 0.241 0.759 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.251 0.749 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.675 -22.400 -2.824 25.417 hybrid contribution 0.992 0.349 0.667 1.246 sum -10.682 -22.051 -2.156 24.597 Atomic orbital electron populations 1.24889 0.95767 0.99295 0.99243 1.19979 0.91991 1.01299 1.01438 1.15806 0.86713 0.93397 1.01729 1.21166 0.94184 0.97016 1.00940 1.20848 0.93676 0.97756 0.99609 1.21056 1.00224 0.91587 1.02875 1.17621 0.91032 0.85781 1.00000 1.43616 1.26446 1.06287 1.56001 1.21129 0.86860 0.84864 0.76701 1.90721 1.20812 1.85212 1.42358 1.21400 0.99616 0.90382 1.04841 1.21451 0.99471 0.92003 1.03768 1.20327 0.86180 0.84414 0.78965 1.90682 1.21402 1.84800 1.43885 1.45944 1.20844 1.11374 1.50631 1.19437 0.90946 0.78001 0.98607 1.21387 1.19968 1.05848 1.08930 0.92352 1.24916 0.97151 0.95591 0.96414 1.69935 1.39585 1.10234 1.33609 0.86430 0.80943 0.77955 0.82042 1.19781 1.20848 1.20927 1.17703 0.86099 0.97560 0.91559 1.21337 0.98167 1.00949 0.93619 1.20966 0.92705 0.99528 0.99537 1.21053 0.98441 0.99070 0.96571 1.20952 0.97327 0.99437 0.95148 1.21291 0.92045 1.00639 1.00465 1.21373 0.92598 0.98343 0.99465 0.75864 0.85586 0.85064 0.85209 0.74882 0.87562 0.87499 0.88413 0.88599 0.93502 0.94686 0.92728 0.86018 0.86172 0.86419 0.86136 0.85844 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.15 -1.63 13.24 -38.84 -0.51 -2.15 16 3 C 0.02 0.27 5.72 -107.03 -0.61 -0.34 16 4 C -0.11 -1.01 9.75 -39.16 -0.38 -1.39 16 5 C -0.10 -0.75 10.02 -39.67 -0.40 -1.14 16 6 C -0.14 -1.10 9.96 -39.32 -0.39 -1.49 16 7 C 0.15 1.54 6.29 -83.74 -0.53 1.02 16 8 N -0.68 -6.34 5.34 -9.90 -0.05 -6.39 16 9 C 0.52 6.23 7.67 -10.99 -0.08 6.15 16 10 O -0.52 -7.88 13.41 5.55 0.07 -7.81 16 11 C -0.12 -1.50 4.99 -27.89 -0.14 -1.64 16 12 C -0.13 -1.93 3.79 -27.88 -0.11 -2.03 16 13 C 0.51 10.29 7.55 -10.98 -0.08 10.21 16 14 O -0.53 -12.34 15.60 5.55 0.09 -12.25 16 15 N -0.56 -11.97 2.50 -114.74 -0.29 -12.26 16 16 C 0.25 6.43 5.08 -5.19 -0.03 6.41 16 17 C -0.52 -14.76 9.39 -34.44 -0.32 -15.09 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.16 3.01 4.45 -83.70 -0.37 2.63 16 26 C -0.12 -2.03 8.35 -39.39 -0.33 -2.36 16 27 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 28 C -0.13 -1.75 10.04 -39.55 -0.40 -2.15 16 29 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16 30 C -0.12 -2.05 9.70 -39.39 -0.38 -2.43 16 31 C -0.10 -1.17 8.40 -39.00 -0.33 -1.50 16 32 H 0.22 1.07 7.80 -54.09 -0.42 0.65 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.41 2.55 8.82 -40.82 -0.36 2.19 16 37 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.11 1.27 8.11 -51.93 -0.42 0.85 16 39 H 0.10 1.49 6.63 -51.93 -0.34 1.14 16 40 H 0.10 1.42 8.10 -51.93 -0.42 1.00 16 41 H 0.05 1.34 7.48 -51.93 -0.39 0.95 16 42 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.12 2.04 7.94 -52.49 -0.42 1.62 16 45 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 47 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 49 H 0.15 1.99 6.22 -52.48 -0.33 1.66 16 LS Contribution 429.76 15.07 6.48 6.48 Total: -1.00 -35.58 429.76 -10.14 -45.72 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.43 Total: 5.81 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -5.72 Total: -10.50 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.40 Total: -44.32 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.16 Total: -20.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -35.58 -10.14 -45.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.978 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds