Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39586 * 120.10776 * 352.23981 * 3 2 1 5 5 C 1.38002 * 119.99598 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.21780 * 359.73926 * 5 4 3 7 7 C 1.38947 * 120.21480 * 0.51486 * 6 5 4 8 8 N 1.39943 * 119.99996 * 179.76680 * 7 6 5 9 9 C 1.34779 * 119.99961 * 214.89170 * 8 7 6 10 10 O 1.21289 * 120.00190 * 355.15505 * 9 8 7 11 11 C 1.50698 * 120.00178 * 175.15484 * 9 8 7 12 12 C 1.52997 * 109.47237 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.47230 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99811 * 1.61657 * 13 12 11 15 15 N 1.34772 * 120.00024 * 181.61863 * 13 12 11 16 16 C 1.46497 * 119.99826 * 184.15718 * 15 13 12 17 17 C 1.50703 * 109.46986 * 269.99478 * 16 15 13 18 18 H 1.07998 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00247 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99911 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00275 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46762 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46952 * 120.00171 * 21 19 17 24 24 H 1.48499 * 109.47011 * 240.00145 * 21 19 17 25 25 C 1.39925 * 120.00068 * 4.15052 * 15 13 12 26 26 C 1.38869 * 120.06778 * 68.09289 * 25 15 13 27 27 C 1.38115 * 119.93056 * 179.97438 * 26 25 15 28 28 C 1.38287 * 120.06804 * 359.97222 * 27 26 25 29 29 C 1.38278 * 120.14082 * 0.05158 * 28 27 26 30 30 C 1.38109 * 120.07094 * 359.94801 * 29 28 27 31 31 C 1.38639 * 119.99951 * 359.48632 * 7 6 5 32 32 H 4.52045 * 14.03224 * 359.97438 * 4 2 1 33 33 H 1.08000 * 120.00487 * 359.95589 * 4 3 2 34 34 H 1.08002 * 119.89195 * 180.02562 * 5 4 3 35 35 H 1.08004 * 119.89679 * 180.25804 * 6 5 4 36 36 H 0.96997 * 120.00535 * 34.89492 * 8 7 6 37 37 H 1.09002 * 109.47472 * 60.00077 * 11 9 8 38 38 H 1.08994 * 109.47157 * 300.00185 * 11 9 8 39 39 H 1.08999 * 109.46960 * 60.00207 * 12 11 9 40 40 H 1.09003 * 109.47235 * 299.99976 * 12 11 9 41 41 H 1.08997 * 109.47467 * 29.99755 * 16 15 13 42 42 H 1.09001 * 109.47406 * 149.99978 * 16 15 13 43 43 H 0.97005 * 120.00350 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03734 * 359.70078 * 26 25 15 45 45 H 1.08001 * 119.96597 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.92937 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.96803 * 179.97438 * 29 28 27 48 48 H 1.08011 * 120.03516 * 179.97438 * 30 29 28 49 49 H 1.08008 * 120.10919 * 180.23038 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3068 -1.1955 0.1631 5 6 4.6868 -1.1923 0.1622 6 6 5.3796 -0.0079 -0.0052 7 6 4.6912 1.1887 -0.1630 8 7 5.3972 2.3857 -0.3273 9 6 4.9135 3.5304 0.1947 10 8 3.8253 3.5405 0.7301 11 6 5.7249 4.7977 0.1132 12 6 4.9531 5.9409 0.7751 13 6 5.7648 7.2081 0.6941 14 8 6.8405 7.2045 0.1337 15 7 5.2955 8.3453 1.2444 16 6 6.0405 9.5969 1.0872 17 6 7.0167 9.7467 2.2256 18 1 7.0764 8.9855 2.9894 19 6 7.8342 10.8549 2.2914 20 7 7.7619 11.7815 1.3610 21 14 9.0447 11.0402 3.7020 22 1 8.9310 9.8697 4.6087 23 1 10.4261 11.1154 3.1622 24 1 8.7396 12.2826 4.4560 25 6 4.0966 8.3306 1.9657 26 6 4.0244 7.6644 3.1820 27 6 2.8397 7.6522 3.8918 28 6 1.7263 8.3029 3.3928 29 6 1.7947 8.9668 2.1817 30 6 2.9764 8.9828 1.4671 31 6 3.3048 1.1958 -0.1635 32 1 -1.0500 -0.0010 0.0006 33 1 2.7690 -2.1235 0.2902 34 1 5.2273 -2.1189 0.2880 35 1 6.4597 -0.0120 -0.0093 36 1 6.2345 2.3918 -0.8168 37 1 5.9112 5.0432 -0.9324 38 1 6.6751 4.6545 0.6276 39 1 4.7665 5.6957 1.8206 40 1 4.0031 6.0839 0.2602 41 1 6.5838 9.5801 0.1425 42 1 5.3455 10.4365 1.0918 43 1 8.3368 12.5615 1.4074 44 1 4.8925 7.1526 3.5704 45 1 2.7829 7.1339 4.8376 46 1 0.8009 8.2916 3.9495 47 1 0.9233 9.4738 1.7944 48 1 3.0291 9.5011 0.5210 49 1 2.7678 2.1244 -0.2898 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071185879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = 20.616436 kcal Electronic energy + Delta-G solvation = -32446.824652 eV Core-core repulsion = 28111.553793 eV Total energy + Delta-G solvation = -4335.270859 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.81607 -41.29908 -39.74653 -39.39872 -36.57659 -36.19286 -34.84404 -34.41696 -33.97888 -31.84938 -31.34743 -30.93469 -30.58982 -29.23410 -26.90587 -24.82539 -24.53325 -23.88876 -23.39807 -23.10933 -21.37376 -20.43272 -20.15382 -18.91225 -18.70975 -17.88571 -17.64692 -17.43076 -17.29946 -17.07786 -16.96112 -16.44194 -16.11960 -15.86078 -15.64575 -15.46342 -15.24921 -14.88247 -14.59895 -14.48850 -14.30259 -14.24304 -14.17186 -13.81424 -13.58555 -13.46264 -13.16087 -12.99182 -12.87889 -12.69339 -12.66995 -12.45316 -12.32545 -12.26714 -12.14046 -12.11262 -11.71850 -11.57931 -11.26749 -10.96980 -10.91942 -10.68022 -10.09983 -9.83083 -9.64970 -9.25204 -9.17590 -8.25668 -6.39902 -0.08954 0.28959 0.36161 0.49880 1.34335 1.35867 1.42631 1.47909 1.64694 1.69925 1.86113 2.06668 2.25447 2.39715 2.86799 2.99601 3.04225 3.30451 3.42769 3.77090 3.91933 3.98724 4.01008 4.07425 4.11074 4.16839 4.21776 4.30032 4.48874 4.50328 4.56799 4.58827 4.65513 4.71003 4.73369 4.77051 4.88675 4.99783 5.09557 5.14500 5.15480 5.26840 5.30500 5.40702 5.46572 5.49482 5.52835 5.61398 5.65660 5.75750 5.96779 5.99924 6.06553 6.31058 6.55591 6.63351 6.70346 7.01616 7.20035 7.34408 8.81836 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002110 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.285637 B =13265.127146 C =14981.517785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.200 4.200 3 C 0.004 3.996 4 C -0.116 4.116 5 C -0.093 4.093 6 C -0.130 4.130 7 C 0.132 3.868 8 N -0.662 5.662 9 C 0.522 3.478 10 O -0.552 6.552 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.508 3.492 14 O -0.572 6.572 15 N -0.564 5.564 16 C 0.265 3.735 17 C -0.538 4.538 18 H 0.050 0.950 19 C 0.009 3.991 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.271 1.271 25 C 0.127 3.873 26 C -0.135 4.135 27 C -0.106 4.106 28 C -0.121 4.121 29 C -0.105 4.105 30 C -0.140 4.140 31 C -0.123 4.123 32 H 0.260 0.740 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.431 0.569 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.009 0.991 42 H 0.019 0.981 43 H 0.268 0.732 44 H 0.113 0.887 45 H 0.150 0.850 46 H 0.158 0.842 47 H 0.153 0.847 48 H 0.116 0.884 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.639 -24.953 -1.065 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.201 4.201 3 C 0.003 3.997 4 C -0.135 4.135 5 C -0.111 4.111 6 C -0.150 4.150 7 C 0.038 3.962 8 N -0.308 5.308 9 C 0.311 3.689 10 O -0.429 6.429 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.298 3.702 14 O -0.451 6.451 15 N -0.291 5.291 16 C 0.146 3.854 17 C -0.577 4.577 18 H 0.069 0.931 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.196 1.196 25 C 0.036 3.964 26 C -0.155 4.155 27 C -0.125 4.125 28 C -0.139 4.139 29 C -0.123 4.123 30 C -0.160 4.160 31 C -0.144 4.144 32 H 0.276 0.724 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.177 0.823 36 H 0.270 0.730 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.027 0.973 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.168 0.832 46 H 0.176 0.824 47 H 0.171 0.829 48 H 0.135 0.865 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.682 -24.685 -1.059 27.772 hybrid contribution 1.151 0.999 0.102 1.527 sum -11.531 -23.686 -0.957 26.361 Atomic orbital electron populations 1.25812 0.96604 0.97338 0.97295 1.20550 0.92963 1.03230 1.03307 1.16062 0.87229 0.93971 1.02438 1.21472 0.95068 0.96812 1.00124 1.21293 0.93223 0.98903 0.97677 1.21401 1.01680 0.90648 1.01291 1.17803 0.90659 0.86639 1.01058 1.43398 1.26734 1.05448 1.55243 1.20928 0.86187 0.85319 0.76496 1.90715 1.22212 1.85744 1.44223 1.21324 0.99397 0.89617 1.05187 1.21295 0.98968 0.90246 1.04313 1.21143 0.86021 0.85366 0.77675 1.90642 1.23324 1.85596 1.45563 1.45795 1.21816 1.10208 1.51286 1.18857 0.90429 0.79928 0.96227 1.21605 1.20842 1.05922 1.09281 0.93124 1.25830 0.98919 0.95150 0.99116 1.70047 1.40495 1.10762 1.35321 0.85367 0.78366 0.78348 0.78753 1.19257 1.20252 1.19587 1.17955 0.85446 1.00307 0.92675 1.21376 0.99306 1.01354 0.93428 1.21338 0.91806 0.99141 1.00183 1.21545 0.99463 0.96891 0.96016 1.21339 0.97051 0.98858 0.95066 1.21405 0.92826 1.00866 1.00913 1.21260 0.93579 0.97796 1.01730 0.72370 0.83837 0.81530 0.82289 0.72990 0.86621 0.86825 0.88199 0.88189 0.97300 0.96252 0.92309 0.86941 0.83242 0.82422 0.82927 0.86546 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 19.25 74.32 1.43 -1.18 16 2 C -0.20 -4.52 13.24 30.02 0.40 -4.13 16 3 C 0.00 0.08 5.72 -21.43 -0.12 -0.04 16 4 C -0.12 -1.89 9.75 22.54 0.22 -1.67 16 5 C -0.09 -1.13 10.02 22.21 0.22 -0.91 16 6 C -0.13 -1.80 9.96 22.44 0.22 -1.58 16 7 C 0.13 2.68 6.29 38.11 0.24 2.92 16 8 N -0.66 -12.13 5.34 -303.61 -1.62 -13.75 16 9 C 0.52 12.85 7.67 87.66 0.67 13.52 16 10 O -0.55 -17.48 13.41 -3.06 -0.04 -17.52 16 11 C -0.12 -2.90 4.99 29.85 0.15 -2.76 16 12 C -0.11 -3.44 3.79 29.85 0.11 -3.33 16 13 C 0.51 21.61 7.55 87.66 0.66 22.27 16 14 O -0.57 -28.18 15.60 -3.07 -0.05 -28.23 16 15 N -0.56 -25.65 2.50 -635.30 -1.59 -27.25 16 16 C 0.27 14.73 5.08 85.63 0.43 15.16 16 17 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 19 C 0.01 0.52 5.46 84.65 0.46 0.98 16 20 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 21 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.13 4.86 4.45 38.15 0.17 5.03 16 26 C -0.14 -4.57 8.35 22.39 0.19 -4.38 16 27 C -0.11 -2.79 10.04 22.25 0.22 -2.56 16 28 C -0.12 -2.79 10.04 22.29 0.22 -2.57 16 29 C -0.10 -2.68 10.04 22.25 0.22 -2.46 16 30 C -0.14 -4.71 9.70 22.39 0.22 -4.49 16 31 C -0.12 -3.10 8.40 22.65 0.19 -2.91 16 32 H 0.26 1.89 7.80 -4.42 -0.03 1.85 16 33 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.43 4.81 8.82 -92.71 -0.82 3.99 16 37 H 0.12 2.69 8.08 -2.39 -0.02 2.68 16 38 H 0.11 2.73 8.11 -2.39 -0.02 2.71 16 39 H 0.10 3.16 6.63 -2.39 -0.02 3.14 16 40 H 0.10 3.10 8.10 -2.39 -0.02 3.08 16 41 H 0.01 0.55 7.48 -2.39 -0.02 0.54 16 42 H 0.02 1.12 7.87 -2.39 -0.02 1.10 16 43 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 44 H 0.11 3.90 7.94 -2.91 -0.02 3.88 16 45 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 47 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 48 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 49 H 0.12 3.51 6.22 -2.91 -0.02 3.49 16 Total: -1.00 -83.05 429.76 5.95 -77.10 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.16 Total: 24.72 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 6.78 Total: -6.53 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -2.93 Total: -97.05 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -0.09 Total: -45.75 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -83.05 5.95 -77.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.719 kcal (2) G-P(sol) polarization free energy of solvation -83.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds