Wall clock time and date at job start Tue Mar 31 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38297 * 119.96392 * 2 1 4 4 C 1.38270 * 120.14250 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.06730 * 0.04192 * 4 3 2 6 6 C 1.38850 * 119.93193 * 359.97438 * 5 4 3 7 7 N 1.39928 * 120.07361 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99848 * 89.97590 * 7 6 5 9 9 C 1.50697 * 109.47078 * 90.00452 * 8 7 6 10 10 H 1.08005 * 120.00320 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00244 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99904 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00319 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47197 * 60.00061 * 13 11 9 15 15 H 1.48507 * 109.47063 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47125 * 299.99812 * 13 11 9 17 17 C 1.34773 * 119.99947 * 269.97859 * 7 6 5 18 18 O 1.21281 * 120.00043 * 179.97438 * 17 7 6 19 19 C 1.50702 * 120.00059 * 359.97438 * 17 7 6 20 20 N 1.46501 * 109.47458 * 179.97438 * 19 17 7 21 21 C 1.35494 * 126.98026 * 264.69036 * 20 19 17 22 22 N 1.30524 * 107.30507 * 179.83158 * 21 20 19 23 23 N 1.28601 * 109.66843 * 0.43886 * 22 21 20 24 24 C 1.30510 * 109.67758 * 359.71966 * 23 22 21 25 25 S 1.76198 * 126.34688 * 179.97438 * 24 23 22 26 26 C 1.81404 * 102.99926 * 270.04064 * 25 24 23 27 27 O 1.42098 * 103.00114 * 23.89352 * 25 24 23 28 28 C 1.38096 * 119.96409 * 180.02562 * 2 1 3 29 29 C 1.50697 * 120.03518 * 0.25844 * 28 2 1 30 30 H 1.09001 * 109.47079 * 269.95644 * 1 2 3 31 31 H 1.08994 * 109.46941 * 29.95942 * 1 2 3 32 32 H 1.09003 * 109.46861 * 149.95563 * 1 2 3 33 33 H 1.08002 * 119.93152 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.96664 * 180.02562 * 4 3 2 35 35 H 1.07996 * 120.03757 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47005 * 210.00069 * 8 7 6 37 37 H 1.08997 * 109.47325 * 330.00297 * 8 7 6 38 38 H 0.96996 * 120.00362 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47038 * 300.00219 * 19 17 7 40 40 H 1.09007 * 109.47121 * 59.99968 * 19 17 7 41 41 H 1.07998 * 126.34426 * 359.97323 * 21 20 19 42 42 H 1.09003 * 109.46769 * 60.00258 * 26 25 24 43 43 H 1.09005 * 109.47125 * 179.97438 * 26 25 24 44 44 H 1.08993 * 109.47151 * 299.99924 * 26 25 24 45 45 H 1.09000 * 109.47010 * 269.72186 * 29 28 2 46 46 H 1.09001 * 109.47021 * 29.72061 * 29 28 2 47 47 H 1.09002 * 109.47128 * 149.72261 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5805 1.2024 -0.0005 5 6 4.2762 0.0092 -0.0019 6 6 3.5857 -1.1954 -0.0023 7 7 4.2876 -2.4060 -0.0032 8 6 4.6559 -3.0400 1.2651 9 6 3.5531 -3.9701 1.7006 10 1 2.6663 -4.0779 1.0936 11 6 3.6761 -4.6836 2.8740 12 7 4.7562 -4.5528 3.6129 13 14 2.3089 -5.8360 3.4142 14 1 2.1041 -6.8807 2.3790 15 1 2.6829 -6.4798 4.6992 16 1 1.0530 -5.0641 3.5938 17 6 4.6247 -2.9886 -1.1708 18 8 5.2334 -4.0376 -1.1716 19 6 4.2454 -2.3366 -2.4754 20 7 4.7227 -3.1594 -3.5896 21 6 5.8819 -3.0100 -4.2750 22 7 5.9212 -3.9490 -5.1807 23 7 4.8561 -4.6660 -5.1073 24 6 4.0919 -4.2208 -4.1477 25 16 2.5291 -4.8776 -3.6673 26 6 1.3616 -3.9497 -4.7001 27 8 2.5953 -6.2232 -4.1193 28 6 2.1968 -1.1964 -0.0005 29 6 1.4433 -2.5014 -0.0070 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5145 33 1 1.6561 2.1325 -0.0004 34 1 4.1170 2.1397 -0.0001 35 1 5.3562 0.0131 -0.0019 36 1 5.5780 -3.6062 1.1339 37 1 4.8055 -2.2729 2.0249 38 1 4.8427 -5.0545 4.4386 39 1 3.1610 -2.2412 -2.5321 40 1 4.7006 -1.3478 -2.5334 41 1 6.6349 -2.2554 -4.1022 42 1 1.5857 -4.1281 -5.7518 43 1 0.3449 -4.2787 -4.4847 44 1 1.4526 -2.8851 -4.4847 45 1 1.2619 -2.8213 1.0191 46 1 0.4907 -2.3684 -0.5199 47 1 2.0322 -3.2585 -0.5249 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071899911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:24 Heat of formation + Delta-G solvation = 51.714349 kcal Electronic energy + Delta-G solvation = -33614.256869 eV Core-core repulsion = 29312.238125 eV Total energy + Delta-G solvation = -4302.018745 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.136 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.08667 -40.46129 -38.72609 -36.03139 -35.49716 -34.78777 -33.42725 -32.78752 -30.72351 -30.66754 -29.19625 -29.05959 -27.79367 -26.73997 -26.05431 -23.42585 -22.72946 -22.57389 -22.13615 -20.81586 -19.34954 -18.31346 -17.55790 -17.17412 -16.89964 -16.07194 -15.97324 -15.79331 -15.56679 -15.47532 -15.07314 -14.69355 -14.59075 -14.25615 -14.09056 -13.96601 -13.89060 -13.20701 -13.04928 -12.94826 -12.84806 -12.60129 -12.54602 -12.25843 -12.18333 -11.91985 -11.73785 -11.71615 -11.56040 -11.17395 -11.07917 -10.91321 -10.89521 -10.74292 -10.71551 -10.49375 -10.25685 -9.75396 -9.65041 -9.53128 -8.72077 -8.58646 -8.52832 -8.40957 -8.18515 -6.17713 -4.22806 1.12065 1.28787 1.39325 1.53528 2.32832 2.41395 2.72583 2.89240 3.22458 3.29155 3.30748 3.41073 3.64607 3.68359 4.31003 4.36790 4.42317 4.51335 4.73407 4.82297 4.90443 4.94050 4.98069 5.05320 5.16852 5.17280 5.19312 5.31664 5.52357 5.54565 5.57144 5.70368 5.71078 5.87300 5.90397 5.95871 5.96605 6.10952 6.41378 6.51440 6.51944 6.57961 6.70767 6.76580 7.01167 7.08451 7.26559 7.76759 7.98545 8.02907 8.46640 8.57849 8.78925 9.42341 10.91184 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.006979 B = 0.004494 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4010.964902 B = 6228.501686 C = 7627.314763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.123 4.123 6 C 0.136 3.864 7 N -0.547 5.547 8 C 0.250 3.750 9 C -0.538 4.538 10 H 0.074 0.926 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.494 3.506 18 O -0.505 6.505 19 C 0.072 3.928 20 N -0.416 5.416 21 C 0.179 3.821 22 N -0.303 5.303 23 N -0.233 5.233 24 C -0.158 4.158 25 S 1.391 4.609 26 C -0.509 4.509 27 O -0.809 6.809 28 C -0.067 4.067 29 C -0.126 4.126 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.222 0.778 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 16.381 -8.054 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.143 4.143 6 C 0.045 3.955 7 N -0.277 5.277 8 C 0.134 3.866 9 C -0.576 4.576 10 H 0.092 0.908 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.278 3.722 18 O -0.380 6.380 19 C -0.055 4.055 20 N -0.106 5.106 21 C -0.109 4.109 22 N -0.144 5.144 23 N -0.076 5.076 24 C -0.515 4.515 25 S 1.577 4.423 26 C -0.667 4.667 27 O -0.803 6.803 28 C -0.069 4.069 29 C -0.182 4.182 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.238 0.762 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.367 14.152 -8.343 18.436 hybrid contribution -0.349 0.223 -0.305 0.515 sum -8.716 14.376 -8.648 18.905 Atomic orbital electron populations 1.20860 0.91220 1.02645 1.02611 1.19649 0.95972 0.92159 1.00668 1.21000 0.94172 0.97297 1.01111 1.20926 0.94143 0.97424 1.01170 1.21370 1.00185 0.91673 1.01034 1.17578 0.90156 0.85884 1.01885 1.45832 1.53741 1.20214 1.07890 1.19510 0.97522 0.93010 0.76607 1.21566 1.04239 1.24973 1.06866 0.90839 1.24910 0.95842 0.96612 0.96406 1.69909 1.26898 1.41793 1.14399 0.86658 0.81990 0.81256 0.78235 1.19848 1.21196 1.20005 1.20165 0.81541 0.85923 0.84576 1.90836 1.39458 1.21447 1.86219 1.22128 1.03440 0.95378 0.84592 1.45722 1.16427 1.23145 1.25263 1.26746 0.90156 1.01736 0.92264 1.74216 1.15557 1.04213 1.20454 1.74327 0.98967 1.19448 1.14852 1.34994 1.17425 0.96932 1.02125 1.70605 0.79180 0.84594 1.07931 1.27836 1.13428 1.12091 1.13299 1.93184 1.81389 1.26621 1.79131 1.20059 0.92766 0.95559 0.98475 1.21158 0.98667 0.93708 1.04636 0.91033 0.91896 0.90894 0.86262 0.86034 0.85853 0.93346 0.94515 0.92533 0.85647 0.85020 0.76158 0.89065 0.86613 0.86950 0.88710 0.91785 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.61 36.01 0.35 -0.53 16 2 C -0.08 -0.83 5.88 -104.65 -0.62 -1.44 16 3 C -0.12 -1.06 9.70 -39.55 -0.38 -1.44 16 4 C -0.12 -1.10 10.04 -39.61 -0.40 -1.49 16 5 C -0.12 -1.39 9.97 -39.40 -0.39 -1.79 16 6 C 0.14 1.82 3.90 -83.69 -0.33 1.50 16 7 N -0.55 -9.17 1.67 -114.74 -0.19 -9.36 16 8 C 0.25 5.61 5.15 -5.20 -0.03 5.58 16 9 C -0.54 -12.92 8.75 -34.44 -0.30 -13.22 16 10 H 0.07 1.62 4.33 -52.48 -0.23 1.39 16 11 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 13 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C 0.49 8.01 7.04 -10.99 -0.08 7.93 16 18 O -0.51 -10.84 16.01 5.56 0.09 -10.75 16 19 C 0.07 0.78 5.25 -5.19 -0.03 0.75 16 20 N -0.42 -5.68 2.24 -120.27 -0.27 -5.95 16 21 C 0.18 2.48 12.74 -89.94 -1.15 1.33 16 22 N -0.30 -5.45 12.21 29.69 0.36 -5.09 16 23 N -0.23 -4.59 12.16 30.35 0.37 -4.22 16 24 C -0.16 -2.57 7.65 -89.95 -0.69 -3.26 16 25 S 1.39 18.76 14.04 -107.50 -1.51 17.26 16 26 C -0.51 -4.60 10.70 101.05 1.08 -3.52 16 27 O -0.81 -15.94 17.83 -35.23 -0.63 -16.57 16 28 C -0.07 -0.81 5.90 -104.43 -0.62 -1.42 16 29 C -0.13 -1.51 7.71 36.00 0.28 -1.23 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.04 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.13 0.96 7.92 -51.93 -0.41 0.55 16 40 H 0.13 0.98 8.09 -51.92 -0.42 0.56 16 41 H 0.22 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 43 H 0.12 0.81 8.14 -51.92 -0.42 0.38 16 44 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.38 7.02 -51.93 -0.36 1.02 16 46 H 0.06 0.53 5.94 -51.93 -0.31 0.22 16 47 H 0.07 0.89 6.06 -51.93 -0.31 0.58 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -39.00 407.71 -9.40 -48.40 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.09 Total: -0.22 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.39 Total: -10.66 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 1.01 Total: -48.42 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.54 Total: -27.32 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 18.76 SS G_CDS: -1.51 Total: 17.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.00 -9.40 -48.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071899911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.113 kcal (2) G-P(sol) polarization free energy of solvation -38.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds