Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 120.00225 * 2 1 4 4 C 1.38210 * 120.00037 * 180.02562 * 3 2 1 5 5 S 1.76201 * 120.00011 * 179.97438 * 4 3 2 6 6 O 1.42108 * 106.40199 * 336.46130 * 5 4 3 7 7 O 1.42093 * 106.40658 * 203.54149 * 5 4 3 8 8 N 1.65601 * 107.21835 * 89.99678 * 5 4 3 9 9 C 1.46500 * 120.00316 * 274.37898 * 8 5 4 10 10 C 1.50704 * 109.46825 * 265.00062 * 9 8 5 11 11 H 1.07998 * 120.00149 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99545 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99645 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46757 * 60.00642 * 14 12 10 16 16 H 1.48504 * 109.46986 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47068 * 300.00357 * 14 12 10 18 18 C 1.39672 * 119.99831 * 94.37915 * 8 5 4 19 19 C 1.38908 * 120.07481 * 61.10988 * 18 8 5 20 20 C 1.38104 * 119.92592 * 180.25741 * 19 18 8 21 21 C 1.38286 * 120.07357 * 359.44352 * 20 19 18 22 22 C 1.38294 * 120.14832 * 0.56000 * 21 20 19 23 23 C 1.38104 * 120.07179 * 359.71645 * 22 21 20 24 24 C 1.38254 * 120.00241 * 0.25251 * 4 3 2 25 25 C 1.38221 * 119.99647 * 359.46623 * 24 4 3 26 26 C 1.38214 * 119.99742 * 180.02562 * 2 1 3 27 27 N 1.48016 * 120.00370 * 359.97438 * 26 2 1 28 28 O 1.21796 * 120.00459 * 186.66346 * 27 26 2 29 29 O 1.21801 * 119.99620 * 6.66495 * 27 26 2 30 30 H 1.09001 * 109.46721 * 96.09065 * 1 2 3 31 31 H 1.08999 * 109.47379 * 216.08874 * 1 2 3 32 32 H 1.08996 * 109.46820 * 336.09333 * 1 2 3 33 33 H 1.08006 * 119.99877 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47026 * 24.99801 * 9 8 5 35 35 H 1.08997 * 109.47290 * 145.00166 * 9 8 5 36 36 H 0.96997 * 119.99990 * 179.97438 * 13 12 10 37 37 H 1.08004 * 120.04037 * 359.97438 * 19 18 8 38 38 H 1.08001 * 119.96589 * 179.72198 * 20 19 18 39 39 H 1.08002 * 119.93084 * 180.27879 * 21 20 19 40 40 H 1.08001 * 119.95906 * 179.74139 * 22 21 20 41 41 H 1.07996 * 120.03485 * 179.97438 * 23 22 21 42 42 H 1.07993 * 120.00315 * 179.73180 * 24 4 3 43 43 H 1.07999 * 119.99584 * 180.27666 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 16 4.4615 2.7232 -0.0012 6 8 3.5796 3.6955 -0.5455 7 8 5.7442 2.4458 -0.5461 8 7 4.7072 3.1481 1.5804 9 6 3.6741 3.8885 2.3090 10 6 3.9719 5.3643 2.2415 11 1 4.8432 5.7155 1.7088 12 6 3.1313 6.2660 2.8589 13 7 2.0699 5.8383 3.5072 14 14 3.5007 8.0953 2.7759 15 1 3.5166 8.5331 1.3570 16 1 2.4535 8.8458 3.5144 17 1 4.8260 8.3610 3.3908 18 6 5.8993 2.8006 2.2198 19 6 7.1117 3.2801 1.7404 20 6 8.2891 2.9302 2.3718 21 6 8.2611 2.1129 3.4869 22 6 7.0558 1.6337 3.9667 23 6 5.8752 1.9751 3.3367 24 6 4.2717 0.0000 -0.0063 25 6 3.5806 -1.1970 -0.0005 26 6 2.1980 -1.1970 -0.0005 27 7 1.4580 -2.4789 -0.0005 28 8 2.0608 -3.5301 0.1214 29 8 0.2461 -2.4823 -0.1225 30 1 -0.3633 -0.1090 -1.0219 31 1 -0.3634 -0.8304 0.6053 32 1 -0.3633 0.9395 0.4165 33 1 1.6583 2.1327 -0.0004 34 1 2.7011 3.6932 1.8583 35 1 3.6632 3.5673 3.3505 36 1 1.4787 6.4726 3.9419 37 1 7.1340 3.9221 0.8722 38 1 9.2325 3.2990 1.9970 39 1 9.1829 1.8444 3.9816 40 1 7.0378 0.9922 4.8354 41 1 4.9344 1.6002 3.7116 42 1 5.3517 -0.0001 -0.0111 43 1 4.1207 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071908799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -24.970227 kcal Electronic energy + Delta-G solvation = -32443.437072 eV Core-core repulsion = 27969.967189 eV Total energy + Delta-G solvation = -4473.469883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.53726 -40.79079 -40.36047 -38.52382 -37.94965 -37.12750 -37.00592 -34.62750 -34.44131 -33.37507 -31.78709 -30.87020 -29.11022 -28.56945 -27.43722 -24.96797 -24.24868 -23.66919 -23.51583 -22.85259 -20.60216 -20.14865 -19.88263 -19.19771 -18.90383 -18.85635 -18.29772 -17.83840 -17.32424 -16.89182 -16.30837 -16.07036 -15.96665 -15.77036 -15.22316 -15.12657 -14.94055 -14.72886 -14.49692 -14.25171 -14.15568 -13.97150 -13.62459 -13.53721 -13.34084 -13.32062 -13.13453 -12.92473 -12.87139 -12.68897 -12.62781 -12.60898 -12.40127 -12.26310 -12.18285 -12.12816 -11.76256 -11.73361 -11.30451 -10.62784 -10.52195 -10.39535 -9.78431 -9.30136 -8.23907 -6.34805 -1.70528 -0.94333 -0.36944 -0.14497 0.08882 0.45967 0.55478 1.39311 1.41312 1.48242 1.57194 1.94322 2.38244 2.50591 2.86593 2.89255 3.08149 3.08771 3.16067 3.61007 3.64396 3.87603 4.03487 4.04215 4.15877 4.18640 4.25545 4.32668 4.35803 4.51204 4.55938 4.63014 4.70331 4.73755 4.83251 4.87033 4.95533 5.09785 5.17143 5.21790 5.31392 5.51022 5.65654 5.67565 5.68880 5.82173 6.01674 6.25489 6.37539 6.70618 7.33547 8.83372 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.003686 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.274453 B = 7593.706932 C = 9362.702756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.031 4.031 4 C -0.629 4.629 5 S 2.684 3.316 6 O -0.965 6.965 7 O -0.959 6.959 8 N -0.936 5.936 9 C 0.269 3.731 10 C -0.546 4.546 11 H 0.052 0.948 12 C 0.020 3.980 13 N -0.920 5.920 14 Si 0.950 3.050 15 H -0.275 1.275 16 H -0.276 1.276 17 H -0.268 1.268 18 C 0.132 3.868 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.132 4.132 24 C -0.025 4.025 25 C -0.061 4.061 26 C -0.014 4.014 27 N 0.027 4.973 28 O -0.165 6.165 29 O -0.151 6.151 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.162 0.838 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.268 0.732 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.124 0.876 42 H 0.181 0.819 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.133 -14.097 -2.634 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 C -0.051 4.051 4 C -0.715 4.715 5 S 2.777 3.223 6 O -0.956 6.956 7 O -0.949 6.949 8 N -0.767 5.767 9 C 0.148 3.852 10 C -0.585 4.585 11 H 0.071 0.929 12 C -0.180 4.180 13 N -0.560 5.560 14 Si 0.775 3.225 15 H -0.200 1.200 16 H -0.201 1.201 17 H -0.193 1.193 18 C 0.038 3.962 19 C -0.152 4.152 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.153 4.153 24 C -0.044 4.044 25 C -0.080 4.080 26 C -0.097 4.097 27 N 0.545 4.455 28 O -0.379 6.379 29 O -0.367 6.367 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.180 0.820 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.171 0.829 41 H 0.142 0.858 42 H 0.198 0.802 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.506 -12.958 -3.295 14.870 hybrid contribution -0.910 0.492 0.167 1.048 sum 5.596 -12.466 -3.128 14.018 Atomic orbital electron populations 1.21462 0.86407 1.05805 1.05615 1.20173 0.99604 0.89790 0.93964 1.21116 0.91950 0.99085 0.92959 1.31568 1.06889 1.21583 1.11451 1.02241 0.73518 0.73789 0.72714 1.93600 1.67543 1.57905 1.76504 1.93543 1.38945 1.85908 1.76498 1.55165 1.23839 1.66410 1.31329 1.18900 0.84067 0.89884 0.92365 1.21645 1.10215 0.92581 1.34044 0.92941 1.25610 0.94641 1.03163 0.94579 1.69968 1.14546 1.36378 1.35081 0.85722 0.78366 0.79970 0.78414 1.19992 1.20126 1.19283 1.17621 0.84559 0.97526 0.96511 1.21476 0.92948 0.99672 1.01103 1.21317 0.97472 0.98148 0.96028 1.21554 0.99086 0.97086 0.95908 1.21362 0.91357 0.99993 1.00071 1.21412 0.99988 0.97898 0.96000 1.21194 1.02173 0.88724 0.92322 1.21418 0.90463 1.01636 0.94532 1.21395 0.93272 0.83123 1.11902 1.43655 1.01212 1.02789 0.97826 1.94539 1.70099 1.20022 1.53223 1.94485 0.96225 1.93734 1.52220 0.87699 0.88089 0.89136 0.82004 0.95151 0.94878 0.92258 0.87260 0.83354 0.82388 0.82882 0.85825 0.80171 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.71 71.24 0.62 -2.15 16 2 C -0.03 -0.81 5.88 -19.87 -0.12 -0.93 16 3 C -0.03 -0.88 9.15 22.27 0.20 -0.68 16 4 C -0.63 -18.24 5.97 22.27 0.13 -18.10 16 5 S 2.68 98.81 5.56 -56.49 -0.31 98.50 16 6 O -0.97 -42.60 16.41 -128.00 -2.10 -44.70 16 7 O -0.96 -35.00 14.96 -128.00 -1.91 -36.91 16 8 N -0.94 -37.09 2.82 -343.14 -0.97 -38.06 16 9 C 0.27 12.83 5.01 85.63 0.43 13.26 16 10 C -0.55 -29.55 9.36 25.60 0.24 -29.31 16 11 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 12 C 0.02 1.10 5.46 84.66 0.46 1.56 16 13 N -0.92 -51.46 13.29 21.45 0.28 -51.17 16 14 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.13 4.67 5.22 38.21 0.20 4.87 16 19 C -0.13 -4.39 8.64 22.40 0.19 -4.19 16 20 C -0.11 -2.81 10.04 22.25 0.22 -2.59 16 21 C -0.12 -2.48 10.04 22.29 0.22 -2.26 16 22 C -0.11 -2.51 10.04 22.25 0.22 -2.29 16 23 C -0.13 -3.94 9.43 22.40 0.21 -3.73 16 24 C -0.02 -0.57 9.52 22.27 0.21 -0.35 16 25 C -0.06 -1.25 9.56 22.27 0.21 -1.04 16 26 C -0.01 -0.33 6.83 36.37 0.25 -0.08 16 27 N 0.03 0.68 4.45 -46.47 -0.21 0.48 16 28 O -0.17 -4.18 18.47 18.89 0.35 -3.83 16 29 O -0.15 -3.79 15.35 18.88 0.29 -3.50 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 2.04 5.81 -2.39 -0.01 2.03 16 32 H 0.09 1.68 8.04 -2.39 -0.02 1.66 16 33 H 0.16 4.62 7.62 -2.91 -0.02 4.59 16 34 H 0.03 1.50 7.73 -2.39 -0.02 1.48 16 35 H 0.03 1.62 7.63 -2.39 -0.02 1.60 16 36 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.11 3.90 7.56 -2.91 -0.02 3.88 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.12 3.58 7.99 -2.91 -0.02 3.56 16 42 H 0.18 3.44 7.61 -2.91 -0.02 3.42 16 43 H 0.19 2.74 7.63 -2.91 -0.02 2.72 16 Total: -1.00 -68.10 387.12 2.42 -65.68 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.06 Total: 16.33 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.92 Total: -48.01 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -0.89 Total: -88.76 kcal Atomic # 8 Polarization: -85.56 SS G_CDS: -3.38 Total: -88.94 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 98.81 SS G_CDS: -0.31 Total: 98.50 kcal Total: -68.10 2.42 -65.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071908799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.714 kcal (2) G-P(sol) polarization free energy of solvation -68.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds