Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 120.00037 * 2 1 4 4 C 1.38210 * 120.00135 * 180.02562 * 3 2 1 5 5 S 1.76205 * 120.00244 * 179.97438 * 4 3 2 6 6 O 1.42098 * 106.39909 * 341.02421 * 5 4 3 7 7 O 1.42097 * 106.40143 * 208.10551 * 5 4 3 8 8 N 1.65597 * 107.21790 * 94.56431 * 5 4 3 9 9 C 1.36935 * 120.00296 * 265.96754 * 8 5 4 10 10 H 1.08004 * 119.99552 * 321.66332 * 9 8 5 11 11 C 1.38807 * 120.00231 * 141.66945 * 9 8 5 12 12 N 1.31625 * 119.99747 * 159.78122 * 11 9 8 13 13 Si 1.86792 * 120.00137 * 339.77966 * 11 9 8 14 14 H 1.48505 * 109.47118 * 95.32133 * 13 11 9 15 15 H 1.48504 * 109.47203 * 215.32014 * 13 11 9 16 16 H 1.48493 * 109.47399 * 335.32174 * 13 11 9 17 17 C 1.46500 * 119.99797 * 85.95955 * 8 5 4 18 18 C 1.50702 * 109.46797 * 95.57126 * 17 8 5 19 19 C 1.38241 * 119.99763 * 85.15950 * 18 17 8 20 20 C 1.38235 * 119.99770 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00410 * 0.09330 * 20 19 18 22 22 C 1.38240 * 119.99599 * 359.86370 * 21 20 19 23 23 C 1.38230 * 120.00323 * 265.13708 * 18 17 8 24 24 C 1.38260 * 120.00148 * 0.24820 * 4 3 2 25 25 C 1.38221 * 119.99193 * 359.47520 * 24 4 3 26 26 C 1.38209 * 119.99794 * 180.02562 * 2 1 3 27 27 N 1.48015 * 120.00244 * 359.97438 * 26 2 1 28 28 O 1.21801 * 119.99907 * 187.11093 * 27 26 2 29 29 O 1.21797 * 119.99895 * 7.11296 * 27 26 2 30 30 H 1.09004 * 109.46944 * 96.16705 * 1 2 3 31 31 H 1.09005 * 109.47298 * 216.17117 * 1 2 3 32 32 H 1.09004 * 109.47261 * 336.17069 * 1 2 3 33 33 H 1.08008 * 120.00175 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99642 * 180.02562 * 12 11 9 35 35 H 1.08995 * 109.47553 * 335.57658 * 17 8 5 36 36 H 1.08999 * 109.47270 * 215.56751 * 17 8 5 37 37 H 1.07993 * 120.00161 * 359.70215 * 19 18 17 38 38 H 1.07996 * 120.00093 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.00751 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99728 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.00196 * 359.97438 * 23 18 17 42 42 H 1.07998 * 120.00511 * 179.72616 * 24 4 3 43 43 H 1.08003 * 119.99387 * 180.28043 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 16 4.4614 2.7233 -0.0012 6 8 3.5455 3.7152 -0.4443 7 8 5.7031 2.4694 -0.6438 8 7 4.8161 3.0852 1.5753 9 6 3.9798 3.8944 2.2970 10 1 3.5096 4.7439 1.8239 11 6 3.7365 3.6231 3.6363 12 7 3.2813 4.5712 4.4277 13 14 4.0550 1.9124 4.3156 14 1 5.4084 1.8659 4.9251 15 1 3.0362 1.5919 5.3474 16 1 3.9737 0.9195 3.2144 17 6 6.0247 2.5394 2.1980 18 6 7.1383 3.5506 2.1046 19 6 7.2553 4.5403 3.0626 20 6 8.2771 5.4674 2.9773 21 6 9.1807 5.4061 1.9329 22 6 9.0641 4.4158 0.9754 23 6 8.0429 3.4881 1.0613 24 6 4.2717 0.0000 -0.0063 25 6 3.5805 -1.1970 -0.0005 26 6 2.1980 -1.1969 -0.0005 27 7 1.4579 -2.4788 -0.0005 28 8 2.0600 -3.5296 0.1296 29 8 0.2469 -2.4828 -0.1307 30 1 -0.3633 -0.1104 -1.0218 31 1 -0.3634 -0.8296 0.6065 32 1 -0.3634 0.9401 0.4152 33 1 1.6583 2.1327 -0.0004 34 1 3.1116 4.3817 5.3638 35 1 6.3191 1.6261 1.6812 36 1 5.8242 2.3156 3.2458 37 1 6.5460 4.5918 3.8753 38 1 8.3684 6.2409 3.7254 39 1 9.9787 6.1306 1.8659 40 1 9.7703 4.3677 0.1596 41 1 7.9519 2.7144 0.3132 42 1 5.3517 0.0000 -0.0111 43 1 4.1206 -2.1323 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071909107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -5.535415 kcal Electronic energy + Delta-G solvation = -32756.150810 eV Core-core repulsion = 28283.523684 eV Total energy + Delta-G solvation = -4472.627126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.23081 -39.31583 -38.96386 -36.66467 -36.23293 -36.21332 -34.77909 -33.05908 -32.76731 -31.86688 -30.83243 -30.43956 -27.80504 -26.33907 -25.98852 -24.30630 -22.77550 -22.18967 -22.09389 -21.12816 -19.10311 -18.70446 -18.59577 -17.65758 -17.59286 -17.33386 -16.53795 -16.17346 -16.05296 -15.69005 -14.80235 -14.72459 -14.54337 -14.21191 -13.94797 -13.73619 -13.44253 -13.28209 -13.18174 -13.03965 -12.94777 -12.78168 -12.47884 -12.35442 -12.08698 -11.59076 -11.55138 -11.39995 -11.18743 -11.15011 -11.14505 -11.04762 -10.85536 -10.80355 -10.68460 -10.51606 -10.33507 -10.22017 -9.72201 -9.45895 -9.05845 -8.57986 -8.46677 -8.35989 -7.10012 -4.50632 -0.24439 1.01682 1.08378 1.33326 1.45011 1.78194 1.86003 2.71121 2.86840 2.89988 3.16009 3.61127 3.81752 4.24774 4.34623 4.34701 4.38305 4.64627 4.77089 5.07565 5.12868 5.16968 5.21779 5.34224 5.36456 5.38388 5.53193 5.54406 5.57904 5.63397 5.68838 5.79910 5.89870 5.99786 6.01689 6.04981 6.10835 6.31598 6.36023 6.46207 6.59437 6.62139 6.87708 6.90925 6.97329 7.13491 7.43587 7.69271 7.83690 8.39609 8.49546 9.93620 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.003544 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.911586 B = 7898.471341 C = 8612.983798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 C -0.032 4.032 4 C -0.604 4.604 5 S 2.501 3.499 6 O -0.965 6.965 7 O -0.986 6.986 8 N -0.811 5.811 9 C -0.224 4.224 10 H 0.131 0.869 11 C 0.066 3.934 12 N -0.799 5.799 13 Si 0.872 3.128 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.256 1.256 17 C 0.157 3.843 18 C -0.090 4.090 19 C -0.082 4.082 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.097 4.097 24 C -0.047 4.047 25 C -0.077 4.077 26 C -0.028 4.028 27 N 0.033 4.967 28 O -0.174 6.174 29 O -0.160 6.160 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.288 0.712 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -4.248 -1.107 5.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.040 4.040 3 C -0.052 4.052 4 C -0.678 4.678 5 S 2.603 3.397 6 O -0.954 6.954 7 O -0.975 6.975 8 N -0.633 5.633 9 C -0.377 4.377 10 H 0.148 0.852 11 C -0.153 4.153 12 N -0.434 5.434 13 Si 0.697 3.303 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.180 1.180 17 C 0.032 3.968 18 C -0.092 4.092 19 C -0.101 4.101 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.116 4.116 24 C -0.067 4.067 25 C -0.097 4.097 26 C -0.112 4.112 27 N 0.549 4.451 28 O -0.386 6.386 29 O -0.375 6.375 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.178 0.822 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.572 -3.373 -2.020 6.029 hybrid contribution -0.581 -1.861 0.681 2.065 sum 3.991 -5.234 -1.339 6.716 Atomic orbital electron populations 1.21303 0.88461 1.04722 1.04289 1.20062 0.98112 0.90743 0.95085 1.20995 0.92710 0.97575 0.93900 1.33227 1.06700 1.24994 1.02925 1.13230 0.73540 0.74423 0.78533 1.93387 1.64394 1.56313 1.81333 1.93355 1.42280 1.85652 1.76260 1.54253 1.23907 1.51491 1.33616 1.19608 1.23450 1.02360 0.92249 0.85199 1.25903 0.94346 0.98109 0.96900 1.69795 1.34574 1.32379 1.06636 0.86962 0.78797 0.84271 0.80222 1.18554 1.20464 1.17994 1.20323 0.83121 0.94274 0.99119 1.20023 0.95632 0.97930 0.95639 1.21154 0.96617 0.93480 0.98871 1.21082 0.95812 0.99288 0.98741 1.21081 0.99308 0.98513 0.95257 1.21058 0.98990 0.96010 0.99129 1.21302 0.93879 0.99347 0.97070 1.20889 1.00744 0.89747 0.95282 1.21094 0.90974 1.00793 0.96837 1.21066 0.92572 0.82850 1.14671 1.43661 1.01086 1.02889 0.97493 1.94512 1.70155 1.20333 1.53603 1.94446 0.96553 1.93766 1.52709 0.89507 0.88610 0.90357 0.82234 0.90064 0.90298 0.91295 0.85477 0.86485 0.86798 0.86586 0.84912 0.83002 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.70 36.00 0.31 -1.40 16 2 C -0.04 -0.60 5.88 -104.63 -0.62 -1.22 16 3 C -0.03 -0.56 9.16 -39.59 -0.36 -0.92 16 4 C -0.60 -10.86 5.97 -39.58 -0.24 -11.09 16 5 S 2.50 50.68 5.58 -107.50 -0.60 50.08 16 6 O -0.96 -22.28 16.06 -57.17 -0.92 -23.20 16 7 O -0.99 -20.21 15.06 -57.17 -0.86 -21.07 16 8 N -0.81 -16.37 2.45 -61.09 -0.15 -16.52 16 9 C -0.22 -4.95 9.49 -15.06 -0.14 -5.09 16 10 H 0.13 3.17 7.63 -52.48 -0.40 2.77 16 11 C 0.07 1.43 5.35 -17.43 -0.09 1.34 16 12 N -0.80 -18.03 13.97 55.49 0.78 -17.25 16 13 Si 0.87 16.76 24.92 -169.99 -4.24 12.52 16 14 H -0.26 -4.68 6.71 56.52 0.38 -4.30 16 15 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 17 C 0.16 2.83 4.42 -5.19 -0.02 2.81 16 18 C -0.09 -1.59 5.42 -104.62 -0.57 -2.16 16 19 C -0.08 -1.42 9.72 -39.58 -0.38 -1.80 16 20 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 21 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 22 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 23 C -0.10 -1.62 9.22 -39.58 -0.36 -1.98 16 24 C -0.05 -0.75 9.52 -39.58 -0.38 -1.12 16 25 C -0.08 -1.16 9.56 -39.58 -0.38 -1.54 16 26 C -0.03 -0.45 6.83 -79.95 -0.55 -1.00 16 27 N 0.03 0.54 4.45 33.96 0.15 0.69 16 28 O -0.17 -2.86 18.47 -29.46 -0.54 -3.41 16 29 O -0.16 -2.56 15.36 -29.46 -0.45 -3.01 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.26 5.84 -51.93 -0.30 0.96 16 32 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.16 2.63 7.52 -52.48 -0.39 2.23 16 34 H 0.29 5.98 8.31 -40.82 -0.34 5.64 16 35 H 0.08 1.22 7.61 -51.93 -0.40 0.83 16 36 H 0.07 1.23 2.94 -51.93 -0.15 1.08 16 37 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.13 2.17 7.08 -52.48 -0.37 1.80 16 42 H 0.15 2.06 7.72 -52.49 -0.41 1.65 16 43 H 0.15 1.89 7.63 -52.48 -0.40 1.49 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -26.41 377.35 -10.63 -37.04 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.51 Total: 10.47 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -4.97 Total: -32.03 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.78 Total: -33.08 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -2.78 Total: -50.69 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -4.24 Total: 12.52 kcal Atomic # 16 Polarization: 50.68 SS G_CDS: -0.60 Total: 50.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -26.41 -10.63 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.504 kcal (2) G-P(sol) polarization free energy of solvation -26.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds