Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 120.00037 * 2 1 4 4 C 1.38210 * 120.00135 * 180.02562 * 3 2 1 5 5 S 1.76205 * 120.00244 * 179.97438 * 4 3 2 6 6 O 1.42098 * 106.39909 * 341.02421 * 5 4 3 7 7 O 1.42097 * 106.40143 * 208.10551 * 5 4 3 8 8 N 1.65597 * 107.21790 * 94.56431 * 5 4 3 9 9 C 1.36935 * 120.00296 * 265.96754 * 8 5 4 10 10 H 1.08004 * 119.99552 * 321.66332 * 9 8 5 11 11 C 1.38807 * 120.00231 * 141.66945 * 9 8 5 12 12 N 1.31625 * 119.99747 * 159.78122 * 11 9 8 13 13 Si 1.86792 * 120.00137 * 339.77966 * 11 9 8 14 14 H 1.48505 * 109.47118 * 95.32133 * 13 11 9 15 15 H 1.48504 * 109.47203 * 215.32014 * 13 11 9 16 16 H 1.48493 * 109.47399 * 335.32174 * 13 11 9 17 17 C 1.46500 * 119.99797 * 85.95955 * 8 5 4 18 18 C 1.50702 * 109.46797 * 95.57126 * 17 8 5 19 19 C 1.38241 * 119.99763 * 85.15950 * 18 17 8 20 20 C 1.38235 * 119.99770 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00410 * 0.09330 * 20 19 18 22 22 C 1.38240 * 119.99599 * 359.86370 * 21 20 19 23 23 C 1.38230 * 120.00323 * 265.13708 * 18 17 8 24 24 C 1.38260 * 120.00148 * 0.24820 * 4 3 2 25 25 C 1.38221 * 119.99193 * 359.47520 * 24 4 3 26 26 C 1.38209 * 119.99794 * 180.02562 * 2 1 3 27 27 N 1.48015 * 120.00244 * 359.97438 * 26 2 1 28 28 O 1.21801 * 119.99907 * 187.11093 * 27 26 2 29 29 O 1.21797 * 119.99895 * 7.11296 * 27 26 2 30 30 H 1.09004 * 109.46944 * 96.16705 * 1 2 3 31 31 H 1.09005 * 109.47298 * 216.17117 * 1 2 3 32 32 H 1.09004 * 109.47261 * 336.17069 * 1 2 3 33 33 H 1.08008 * 120.00175 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99642 * 180.02562 * 12 11 9 35 35 H 1.08995 * 109.47553 * 335.57658 * 17 8 5 36 36 H 1.08999 * 109.47270 * 215.56751 * 17 8 5 37 37 H 1.07993 * 120.00161 * 359.70215 * 19 18 17 38 38 H 1.07996 * 120.00093 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.00751 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99728 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.00196 * 359.97438 * 23 18 17 42 42 H 1.07998 * 120.00511 * 179.72616 * 24 4 3 43 43 H 1.08003 * 119.99387 * 180.28043 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 16 4.4614 2.7233 -0.0012 6 8 3.5455 3.7152 -0.4443 7 8 5.7031 2.4694 -0.6438 8 7 4.8161 3.0852 1.5753 9 6 3.9798 3.8944 2.2970 10 1 3.5096 4.7439 1.8239 11 6 3.7365 3.6231 3.6363 12 7 3.2813 4.5712 4.4277 13 14 4.0550 1.9124 4.3156 14 1 5.4084 1.8659 4.9251 15 1 3.0362 1.5919 5.3474 16 1 3.9737 0.9195 3.2144 17 6 6.0247 2.5394 2.1980 18 6 7.1383 3.5506 2.1046 19 6 7.2553 4.5403 3.0626 20 6 8.2771 5.4674 2.9773 21 6 9.1807 5.4061 1.9329 22 6 9.0641 4.4158 0.9754 23 6 8.0429 3.4881 1.0613 24 6 4.2717 0.0000 -0.0063 25 6 3.5805 -1.1970 -0.0005 26 6 2.1980 -1.1969 -0.0005 27 7 1.4579 -2.4788 -0.0005 28 8 2.0600 -3.5296 0.1296 29 8 0.2469 -2.4828 -0.1307 30 1 -0.3633 -0.1104 -1.0218 31 1 -0.3634 -0.8296 0.6065 32 1 -0.3634 0.9401 0.4152 33 1 1.6583 2.1327 -0.0004 34 1 3.1116 4.3817 5.3638 35 1 6.3191 1.6261 1.6812 36 1 5.8242 2.3156 3.2458 37 1 6.5460 4.5918 3.8753 38 1 8.3684 6.2409 3.7254 39 1 9.9787 6.1306 1.8659 40 1 9.7703 4.3677 0.1596 41 1 7.9519 2.7144 0.3132 42 1 5.3517 0.0000 -0.0111 43 1 4.1206 -2.1323 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071909107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -18.319282 kcal Electronic energy + Delta-G solvation = -32756.705161 eV Core-core repulsion = 28283.523684 eV Total energy + Delta-G solvation = -4473.181476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.50788 -40.61430 -40.21043 -38.01440 -37.92103 -37.68337 -36.58268 -34.31755 -34.27914 -33.18536 -32.16180 -31.63924 -29.01406 -27.74783 -27.27612 -25.87543 -24.09261 -23.47044 -23.31179 -22.38437 -20.54538 -20.13827 -19.91545 -19.20403 -18.89157 -18.79593 -18.15139 -17.57837 -17.41403 -17.04435 -16.07169 -15.97881 -15.86956 -15.75807 -15.18650 -15.08761 -14.81056 -14.79987 -14.58734 -14.35622 -14.18522 -13.93700 -13.85708 -13.55158 -13.34884 -13.08036 -12.92281 -12.87395 -12.72069 -12.70277 -12.65321 -12.43116 -12.37363 -12.19323 -12.02072 -11.97269 -11.67090 -11.62257 -11.11033 -10.97789 -10.29183 -10.15651 -9.68179 -9.59170 -8.68008 -6.20585 -1.55409 -0.48627 -0.24449 -0.01984 0.15552 0.54072 0.64016 1.18699 1.31161 1.35770 1.82167 2.06386 2.29110 2.71682 2.90630 3.08005 3.11903 3.19530 3.39920 3.81377 3.83799 3.87519 3.96956 3.99812 4.15420 4.25349 4.30670 4.36446 4.39484 4.44618 4.47597 4.55100 4.72487 4.78949 4.79986 4.84459 4.88431 5.01170 5.05782 5.22821 5.31442 5.37777 5.43405 5.68834 5.71912 5.87673 6.12432 6.24794 6.41594 6.80004 6.88530 8.41435 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.003544 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.911586 B = 7898.471341 C = 8612.983798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 C -0.042 4.042 4 C -0.624 4.624 5 S 2.556 3.444 6 O -0.996 6.996 7 O -0.983 6.983 8 N -0.822 5.822 9 C -0.259 4.259 10 H 0.088 0.912 11 C 0.047 3.953 12 N -0.852 5.852 13 Si 0.906 3.094 14 H -0.243 1.243 15 H -0.287 1.287 16 H -0.247 1.247 17 C 0.146 3.854 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.136 4.136 21 C -0.118 4.118 22 C -0.134 4.134 23 C -0.113 4.113 24 C -0.045 4.045 25 C -0.069 4.069 26 C -0.033 4.033 27 N 0.031 4.969 28 O -0.176 6.176 29 O -0.153 6.153 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.290 0.710 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.179 0.821 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -6.570 -2.590 9.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.041 4.041 3 C -0.062 4.062 4 C -0.703 4.703 5 S 2.658 3.342 6 O -0.986 6.986 7 O -0.973 6.973 8 N -0.647 5.647 9 C -0.405 4.405 10 H 0.106 0.894 11 C -0.167 4.167 12 N -0.488 5.488 13 Si 0.730 3.270 14 H -0.169 1.169 15 H -0.214 1.214 16 H -0.171 1.171 17 C 0.022 3.978 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.153 4.153 21 C -0.136 4.136 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.065 4.065 25 C -0.088 4.088 26 C -0.117 4.117 27 N 0.547 4.453 28 O -0.388 6.388 29 O -0.369 6.369 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.176 0.824 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.196 0.804 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.165 -5.625 -3.423 9.021 hybrid contribution -1.055 -1.336 0.789 1.876 sum 5.110 -6.961 -2.634 9.028 Atomic orbital electron populations 1.21411 0.86597 1.05529 1.05365 1.20266 0.99543 0.90109 0.94175 1.21075 0.92584 0.98360 0.94168 1.32688 1.07186 1.24270 1.06199 1.09815 0.73139 0.74273 0.77009 1.93380 1.65517 1.58025 1.81639 1.93381 1.42194 1.85963 1.75754 1.53739 1.24973 1.53263 1.32683 1.18933 1.24996 1.03597 0.93017 0.89435 1.26134 0.93981 1.00005 0.96565 1.69857 1.38315 1.33726 1.06939 0.86422 0.79187 0.81597 0.79762 1.16860 1.21357 1.17066 1.20595 0.82512 0.95376 0.99358 1.20104 0.96153 0.98427 0.96517 1.21178 0.97480 0.94797 0.98947 1.21380 0.95252 0.99025 0.99689 1.21479 0.99438 0.98650 0.94069 1.21445 0.98656 0.95224 0.99878 1.21429 0.94553 1.00281 0.96875 1.21212 1.02056 0.89044 0.94152 1.21420 0.90643 1.01671 0.95092 1.21327 0.93265 0.82933 1.14152 1.43674 1.01157 1.02878 0.97587 1.94517 1.70162 1.20291 1.53782 1.94452 0.96469 1.93759 1.52261 0.87909 0.88476 0.89119 0.82370 0.90001 0.87816 0.91404 0.87333 0.84566 0.83310 0.83722 0.84791 0.80417 0.80017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.70 71.24 0.62 -2.55 16 2 C -0.04 -1.14 5.88 -19.87 -0.12 -1.26 16 3 C -0.04 -1.40 9.16 22.27 0.20 -1.20 16 4 C -0.62 -21.36 5.97 22.27 0.13 -21.22 16 5 S 2.56 102.39 5.58 -56.49 -0.32 102.08 16 6 O -1.00 -46.84 16.06 -128.00 -2.06 -48.90 16 7 O -0.98 -38.52 15.06 -128.00 -1.93 -40.45 16 8 N -0.82 -33.77 2.45 -347.18 -0.85 -34.62 16 9 C -0.26 -12.15 9.49 84.03 0.80 -11.36 16 10 H 0.09 4.72 7.63 -2.91 -0.02 4.69 16 11 C 0.05 2.16 5.35 84.86 0.45 2.61 16 12 N -0.85 -41.46 13.97 21.65 0.30 -41.16 16 13 Si 0.91 34.91 24.92 68.60 1.71 36.62 16 14 H -0.24 -8.60 6.71 99.48 0.67 -7.93 16 15 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 17 C 0.15 5.23 4.42 85.63 0.38 5.61 16 18 C -0.11 -3.89 5.42 -19.86 -0.11 -3.99 16 19 C -0.11 -3.71 9.72 22.27 0.22 -3.49 16 20 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 21 C -0.12 -3.01 10.05 22.27 0.22 -2.78 16 22 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 23 C -0.11 -3.59 9.22 22.27 0.21 -3.38 16 24 C -0.05 -1.28 9.52 22.27 0.21 -1.07 16 25 C -0.07 -1.81 9.56 22.27 0.21 -1.60 16 26 C -0.03 -0.98 6.83 36.37 0.25 -0.73 16 27 N 0.03 0.91 4.45 -46.47 -0.21 0.71 16 28 O -0.18 -5.24 18.47 18.89 0.35 -4.89 16 29 O -0.15 -4.45 15.36 18.89 0.29 -4.16 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.10 2.32 5.84 -2.38 -0.01 2.31 16 32 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 33 H 0.16 5.21 7.52 -2.91 -0.02 5.19 16 34 H 0.29 12.96 8.31 -92.71 -0.77 12.19 16 35 H 0.10 3.04 7.61 -2.39 -0.02 3.02 16 36 H 0.07 2.43 2.94 -2.39 -0.01 2.43 16 37 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.13 4.13 7.08 -2.91 -0.02 4.11 16 42 H 0.18 4.06 7.72 -2.91 -0.02 4.04 16 43 H 0.18 3.66 7.63 -2.91 -0.02 3.64 16 Total: -1.00 -58.79 377.35 2.45 -56.34 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 1.03 Total: 31.97 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 4.13 Total: -53.54 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -0.76 Total: -75.07 kcal Atomic # 8 Polarization: -95.06 SS G_CDS: -3.34 Total: -98.40 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 1.71 Total: 36.62 kcal Atomic # 16 Polarization: 102.39 SS G_CDS: -0.32 Total: 102.08 kcal Total: -58.79 2.45 -56.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.020 kcal (2) G-P(sol) polarization free energy of solvation -58.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds