Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36643 * 125.18001 * 21.36982 * 3 2 1 5 5 C 1.36933 * 114.69186 * 179.97438 * 4 3 2 6 6 C 1.36357 * 114.78184 * 0.02562 * 5 4 3 7 7 C 1.47760 * 125.13915 * 179.97438 * 6 5 4 8 8 C 1.39629 * 120.14848 * 0.21177 * 7 6 5 9 9 C 1.37932 * 119.84593 * 180.27084 * 8 7 6 10 10 C 1.38381 * 120.14851 * 359.74769 * 9 8 7 11 11 C 1.38342 * 120.30137 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.92401 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46830 * 270.01459 * 12 11 10 14 14 S 1.65600 * 120.00122 * 165.00150 * 13 12 11 15 15 O 1.42103 * 104.27732 * 181.07221 * 14 13 12 16 16 O 1.42099 * 104.27714 * 308.92919 * 14 13 12 17 17 C 1.81404 * 104.44809 * 64.99949 * 14 13 12 18 18 C 1.52996 * 109.46671 * 179.97438 * 17 14 13 19 19 C 1.50702 * 109.46874 * 180.02562 * 18 17 14 20 20 H 1.08002 * 120.00288 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00346 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99875 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47287 * 60.00042 * 23 21 19 25 25 H 1.48501 * 109.47251 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47223 * 299.99949 * 23 21 19 27 27 C 1.37969 * 120.14855 * 359.96853 * 11 10 9 28 28 S 1.75831 * 109.71954 * 0.22760 * 6 5 4 29 29 H 1.08000 * 122.64902 * 0.02562 * 4 3 2 30 30 H 1.08005 * 122.60816 * 179.97438 * 5 4 3 31 31 H 1.08005 * 120.07899 * 0.02562 * 8 7 6 32 32 H 1.08003 * 119.92042 * 179.72049 * 9 8 7 33 33 H 1.08002 * 119.84670 * 179.97438 * 10 9 8 34 34 H 1.08994 * 109.47400 * 30.01424 * 12 11 10 35 35 H 1.08996 * 109.47001 * 150.01696 * 12 11 10 36 36 H 0.96999 * 120.00025 * 345.00523 * 13 12 11 37 37 H 1.09001 * 109.47237 * 300.00001 * 17 14 13 38 38 H 1.08999 * 109.46956 * 60.00226 * 17 14 13 39 39 H 1.08992 * 109.47399 * 299.99970 * 18 17 14 40 40 H 1.08999 * 109.47232 * 60.00412 * 18 17 14 41 41 H 0.96996 * 119.99986 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.07258 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3557 -1.0391 -0.4070 5 6 4.7021 -0.8061 -0.3167 6 6 5.0382 0.4245 0.1649 7 6 6.4189 0.9148 0.3565 8 6 7.5043 0.0985 0.0321 9 6 8.7905 0.5604 0.2187 10 6 9.0064 1.8315 0.7213 11 6 7.9355 2.6471 1.0404 12 6 8.1805 4.0297 1.5878 13 7 8.2562 3.9698 3.0496 14 16 8.8787 5.2474 3.8996 15 8 8.8173 4.8290 5.2562 16 8 10.1249 5.5129 3.2706 17 6 7.7118 6.6032 3.5981 18 6 8.1825 7.8556 4.3402 19 6 7.2128 8.9818 4.0902 20 1 6.3476 8.8205 3.4643 21 6 7.4307 10.2184 4.6597 22 7 8.4846 10.4150 5.4216 23 14 6.2283 11.6140 4.3504 24 1 4.8818 11.2253 4.8412 25 1 6.6859 12.8301 5.0696 26 1 6.1618 11.8966 2.8941 27 6 6.6438 2.1977 0.8586 28 16 3.5803 1.3371 0.5302 29 1 2.9486 -1.9705 -0.7718 30 1 5.4403 -1.5404 -0.6037 31 1 7.3371 -0.8937 -0.3604 32 1 9.6309 -0.0717 -0.0276 33 1 10.0156 2.1880 0.8659 34 1 9.1190 4.4166 1.1909 35 1 7.3628 4.6873 1.2930 36 1 7.9417 3.1817 3.5197 37 1 7.6639 6.8103 2.5290 38 1 6.7231 6.3183 3.9577 39 1 8.2301 7.6482 5.4091 40 1 9.1713 8.1407 3.9810 41 1 8.6376 11.2848 5.8225 42 1 5.8087 2.8353 1.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071916260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = 3.759162 kcal Electronic energy + Delta-G solvation = -27054.261600 eV Core-core repulsion = 23024.790388 eV Total energy + Delta-G solvation = -4029.471212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.03074 -38.43506 -36.83216 -36.62879 -35.59317 -35.36774 -33.91701 -32.68304 -31.35730 -31.18711 -29.24010 -26.01416 -25.65367 -25.62473 -22.78220 -22.16241 -21.69439 -20.84349 -19.12092 -18.82959 -17.50728 -17.07564 -16.83522 -16.54254 -16.13127 -15.71246 -15.61952 -15.28446 -14.79904 -14.73741 -14.56742 -14.54155 -13.96525 -13.73219 -13.65126 -13.54048 -13.32443 -13.29818 -13.00204 -12.64546 -12.52206 -12.48341 -11.98754 -11.85034 -11.77511 -11.63194 -11.54943 -11.40190 -11.17159 -11.08473 -10.99238 -10.47154 -10.40198 -10.12139 -9.84861 -9.56417 -9.33444 -9.20029 -9.07416 -8.51892 -8.47165 -6.14272 -4.20040 -0.45382 0.59668 0.63547 0.96456 0.98042 1.18679 1.96295 2.43586 2.82917 3.06720 3.25856 3.31045 3.32494 3.41091 3.45823 3.92090 4.16987 4.27863 4.36311 4.45301 4.57245 4.66010 4.69570 4.76898 4.93023 4.97709 5.14506 5.19689 5.20952 5.27757 5.39464 5.51271 5.56620 5.60749 5.63575 5.69274 5.84206 5.96978 6.01829 6.17476 6.45120 6.46917 6.95671 7.00684 7.27580 7.33762 7.78293 8.15173 8.83094 9.44817 10.96639 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.002070 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.797922 B =13524.634229 C =16101.339472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.280 3.720 3 C -0.167 4.167 4 C -0.055 4.055 5 C -0.142 4.142 6 C -0.116 4.116 7 C -0.033 4.033 8 C -0.089 4.089 9 C -0.117 4.117 10 C -0.088 4.088 11 C -0.086 4.086 12 C 0.154 3.846 13 N -1.125 6.125 14 S 2.593 3.407 15 O -0.965 6.965 16 O -0.966 6.966 17 C -0.589 4.589 18 C 0.028 3.972 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.091 4.091 28 S 0.226 5.774 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.414 0.586 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 -25.519 -14.804 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.036 4.036 3 C -0.288 4.288 4 C -0.091 4.091 5 C -0.171 4.171 6 C -0.236 4.236 7 C -0.035 4.035 8 C -0.109 4.109 9 C -0.135 4.135 10 C -0.107 4.107 11 C -0.088 4.088 12 C 0.028 3.972 13 N -0.882 5.882 14 S 2.691 3.309 15 O -0.956 6.956 16 O -0.956 6.956 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.111 4.111 28 S 0.496 5.504 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.868 -23.768 -13.684 27.855 hybrid contribution -0.709 -0.764 -0.811 1.321 sum -5.577 -24.532 -14.495 29.035 Atomic orbital electron populations 1.81328 1.11159 1.06706 1.08934 1.24302 0.90942 0.94487 0.93836 1.20277 0.89272 1.01851 1.17373 1.20448 0.92240 0.98460 0.97945 1.20347 0.95928 0.96731 1.04104 1.23746 0.96417 0.98089 1.05307 1.17938 0.89180 0.94442 1.01943 1.21213 0.91634 0.99333 0.98757 1.21129 0.96813 0.96057 0.99467 1.21362 0.99359 0.93627 0.96352 1.19758 0.92858 0.96358 0.99804 1.20213 1.03302 0.93696 0.80036 1.55898 1.83153 1.34749 1.14377 1.05576 0.76438 0.75391 0.73531 1.93561 1.87512 1.80592 1.33901 1.93539 1.40159 1.85038 1.76842 1.30447 1.15287 1.15965 1.10587 1.18958 0.98024 0.88840 0.95287 1.20956 1.09068 0.94788 1.31251 0.92107 1.25068 0.95626 0.98886 0.94908 1.69942 1.27103 1.23985 1.31766 0.86530 0.81116 0.81170 0.78452 1.20091 1.21082 1.20084 1.21181 0.97023 0.94587 0.98304 1.84479 0.93349 1.13367 1.59178 0.82969 0.82878 0.85319 0.85151 0.84969 0.88943 0.90587 0.75324 0.86289 0.86053 0.94826 0.94793 0.92459 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.56 18.54 41.84 0.78 -3.79 16 2 C 0.28 2.50 15.81 -22.47 -0.36 2.15 16 3 C -0.17 -1.13 6.31 -38.23 -0.24 -1.37 16 4 C -0.06 -0.26 10.11 -40.63 -0.41 -0.68 16 5 C -0.14 -0.65 9.66 -40.73 -0.39 -1.04 16 6 C -0.12 -0.71 6.41 -36.37 -0.23 -0.94 16 7 C -0.03 -0.22 5.87 -104.98 -0.62 -0.84 16 8 C -0.09 -0.50 9.54 -39.17 -0.37 -0.88 16 9 C -0.12 -0.70 10.03 -39.64 -0.40 -1.09 16 10 C -0.09 -0.66 9.69 -39.49 -0.38 -1.04 16 11 C -0.09 -0.71 5.27 -104.68 -0.55 -1.26 16 12 C 0.15 1.45 6.25 -5.19 -0.03 1.42 16 13 N -1.12 -12.77 5.88 -11.66 -0.07 -12.83 16 14 S 2.59 42.60 5.46 -107.50 -0.59 42.01 16 15 O -0.97 -19.03 18.08 -57.54 -1.04 -20.07 16 16 O -0.97 -18.59 17.50 -57.54 -1.01 -19.59 16 17 C -0.59 -10.49 6.01 37.16 0.22 -10.26 16 18 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 19 C -0.52 -14.06 9.11 -34.44 -0.31 -14.38 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 C -0.09 -0.69 9.25 -39.18 -0.36 -1.05 16 28 S 0.23 1.47 22.18 -107.50 -2.38 -0.91 16 29 H 0.15 0.41 8.06 -52.49 -0.42 -0.02 16 30 H 0.15 0.35 6.91 -52.48 -0.36 -0.01 16 31 H 0.13 0.42 6.76 -52.48 -0.35 0.07 16 32 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.09 0.89 7.64 -51.93 -0.40 0.49 16 35 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.41 4.06 8.61 -34.47 -0.30 3.77 16 37 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 38 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.13 0.86 7.27 -52.49 -0.38 0.48 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -36.25 399.60 -11.96 -48.21 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.71 Total: -0.39 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -4.68 Total: -29.21 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 1.44 Total: -41.99 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -2.05 Total: -39.66 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 44.07 SS G_CDS: -2.97 Total: 41.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.25 -11.96 -48.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.973 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds