Wall clock time and date at job start Tue Mar 31 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36643 * 125.18001 * 21.36982 * 3 2 1 5 5 C 1.36933 * 114.69186 * 179.97438 * 4 3 2 6 6 C 1.36357 * 114.78184 * 0.02562 * 5 4 3 7 7 C 1.47760 * 125.13915 * 179.97438 * 6 5 4 8 8 C 1.39629 * 120.14848 * 0.21177 * 7 6 5 9 9 C 1.37932 * 119.84593 * 180.27084 * 8 7 6 10 10 C 1.38381 * 120.14851 * 359.74769 * 9 8 7 11 11 C 1.38342 * 120.30137 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.92401 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46830 * 270.01459 * 12 11 10 14 14 S 1.65600 * 120.00122 * 165.00150 * 13 12 11 15 15 O 1.42103 * 104.27732 * 181.07221 * 14 13 12 16 16 O 1.42099 * 104.27714 * 308.92919 * 14 13 12 17 17 C 1.81404 * 104.44809 * 64.99949 * 14 13 12 18 18 C 1.52996 * 109.46671 * 179.97438 * 17 14 13 19 19 C 1.50702 * 109.46874 * 180.02562 * 18 17 14 20 20 H 1.08002 * 120.00288 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00346 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99875 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00266 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47287 * 60.00042 * 23 21 19 25 25 H 1.48501 * 109.47251 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47223 * 299.99949 * 23 21 19 27 27 C 1.37969 * 120.14855 * 359.96853 * 11 10 9 28 28 S 1.75831 * 109.71954 * 0.22760 * 6 5 4 29 29 H 1.08000 * 122.64902 * 0.02562 * 4 3 2 30 30 H 1.08005 * 122.60816 * 179.97438 * 5 4 3 31 31 H 1.08005 * 120.07899 * 0.02562 * 8 7 6 32 32 H 1.08003 * 119.92042 * 179.72049 * 9 8 7 33 33 H 1.08002 * 119.84670 * 179.97438 * 10 9 8 34 34 H 1.08994 * 109.47400 * 30.01424 * 12 11 10 35 35 H 1.08996 * 109.47001 * 150.01696 * 12 11 10 36 36 H 0.96999 * 120.00025 * 345.00523 * 13 12 11 37 37 H 1.09001 * 109.47237 * 300.00001 * 17 14 13 38 38 H 1.08999 * 109.46956 * 60.00226 * 17 14 13 39 39 H 1.08992 * 109.47399 * 299.99970 * 18 17 14 40 40 H 1.08999 * 109.47232 * 60.00412 * 18 17 14 41 41 H 0.96996 * 119.99986 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.07258 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3557 -1.0391 -0.4070 5 6 4.7021 -0.8061 -0.3167 6 6 5.0382 0.4245 0.1649 7 6 6.4189 0.9148 0.3565 8 6 7.5043 0.0985 0.0321 9 6 8.7905 0.5604 0.2187 10 6 9.0064 1.8315 0.7213 11 6 7.9355 2.6471 1.0404 12 6 8.1805 4.0297 1.5878 13 7 8.2562 3.9698 3.0496 14 16 8.8787 5.2474 3.8996 15 8 8.8173 4.8290 5.2562 16 8 10.1249 5.5129 3.2706 17 6 7.7118 6.6032 3.5981 18 6 8.1825 7.8556 4.3402 19 6 7.2128 8.9818 4.0902 20 1 6.3476 8.8205 3.4643 21 6 7.4307 10.2184 4.6597 22 7 8.4846 10.4150 5.4216 23 14 6.2283 11.6140 4.3504 24 1 4.8818 11.2253 4.8412 25 1 6.6859 12.8301 5.0696 26 1 6.1618 11.8966 2.8941 27 6 6.6438 2.1977 0.8586 28 16 3.5803 1.3371 0.5302 29 1 2.9486 -1.9705 -0.7718 30 1 5.4403 -1.5404 -0.6037 31 1 7.3371 -0.8937 -0.3604 32 1 9.6309 -0.0717 -0.0276 33 1 10.0156 2.1880 0.8659 34 1 9.1190 4.4166 1.1909 35 1 7.3628 4.6873 1.2930 36 1 7.9417 3.1817 3.5197 37 1 7.6639 6.8103 2.5290 38 1 6.7231 6.3183 3.9577 39 1 8.2301 7.6482 5.4091 40 1 9.1713 8.1407 3.9810 41 1 8.6376 11.2848 5.8225 42 1 5.8087 2.8353 1.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071916260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:34 Heat of formation + Delta-G solvation = -19.750830 kcal Electronic energy + Delta-G solvation = -27055.281070 eV Core-core repulsion = 23024.790388 eV Total energy + Delta-G solvation = -4030.490682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.52538 -38.92285 -38.12011 -37.49796 -36.98068 -36.27730 -35.86564 -33.19885 -33.09102 -31.97282 -29.73911 -27.56151 -26.70463 -26.12897 -23.57335 -23.25527 -22.65723 -21.34632 -20.30978 -19.49669 -19.02333 -18.20961 -17.62104 -17.33284 -17.15042 -16.98705 -16.52096 -16.25210 -16.02961 -15.88921 -15.32553 -15.17532 -15.00265 -14.56556 -14.48313 -14.35012 -14.17525 -14.04427 -13.95415 -13.69850 -13.55354 -13.28891 -13.15532 -13.07502 -12.99339 -12.89190 -12.87026 -12.77156 -12.32450 -12.20127 -12.15133 -12.01992 -11.71631 -11.65960 -11.17555 -10.62595 -10.62105 -10.35336 -9.83311 -9.63791 -8.95334 -8.24417 -6.37924 -0.92069 -0.65979 0.10842 0.38484 0.49444 0.75576 1.41665 1.44582 1.51493 1.52634 1.80309 1.95263 2.23034 2.38959 2.83832 2.84747 2.91170 3.09057 3.30757 3.46791 3.68133 3.99051 4.03997 4.15377 4.18054 4.26803 4.35468 4.40547 4.48983 4.49607 4.71563 4.79915 4.89018 4.90223 4.96956 5.04437 5.14360 5.31211 5.32283 5.34976 5.50287 5.55280 5.64756 5.70444 5.99649 6.08318 6.12989 6.30859 6.75886 7.32021 8.87446 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.002070 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.797922 B =13524.634229 C =16101.339472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.302 3.698 3 C -0.188 4.188 4 C -0.036 4.036 5 C -0.132 4.132 6 C -0.118 4.118 7 C -0.040 4.040 8 C -0.083 4.083 9 C -0.117 4.117 10 C -0.101 4.101 11 C -0.098 4.098 12 C 0.143 3.857 13 N -1.104 6.104 14 S 2.624 3.376 15 O -1.000 7.000 16 O -0.995 6.995 17 C -0.589 4.589 18 C 0.019 3.981 19 C -0.538 4.538 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.934 5.934 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.100 4.100 28 S 0.201 5.799 29 H 0.178 0.822 30 H 0.185 0.815 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.424 0.576 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.005 0.995 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -27.751 -16.920 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.013 4.013 3 C -0.309 4.309 4 C -0.072 4.072 5 C -0.161 4.161 6 C -0.238 4.238 7 C -0.042 4.042 8 C -0.103 4.103 9 C -0.135 4.135 10 C -0.121 4.121 11 C -0.100 4.100 12 C 0.018 3.982 13 N -0.866 5.866 14 S 2.721 3.279 15 O -0.990 6.990 16 O -0.985 6.985 17 C -0.721 4.721 18 C -0.020 4.020 19 C -0.577 4.577 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.573 5.573 23 Si 0.795 3.205 24 H -0.189 1.189 25 H -0.211 1.211 26 H -0.187 1.187 27 C -0.120 4.120 28 S 0.472 5.528 29 H 0.195 0.805 30 H 0.202 0.798 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.260 0.740 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.024 0.976 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.543 -25.997 -15.802 30.923 hybrid contribution -0.417 -0.222 -0.227 0.524 sum -5.960 -26.218 -16.029 31.303 Atomic orbital electron populations 1.81337 1.12627 1.08428 1.11068 1.24589 0.91301 0.93034 0.92360 1.20329 0.88192 1.02857 1.19504 1.20802 0.92156 0.98535 0.95738 1.20691 0.96316 0.96502 1.02635 1.23819 0.95728 0.98567 1.05672 1.18078 0.89846 0.94326 1.01956 1.21571 0.90958 1.00298 0.97470 1.21411 0.97890 0.95565 0.98591 1.21520 0.99198 0.94477 0.96855 1.19615 0.93471 0.95772 1.01093 1.20478 1.03989 0.95448 0.78251 1.55377 1.82677 1.33197 1.15328 1.04345 0.75590 0.75367 0.72611 1.93507 1.87854 1.81197 1.36484 1.93499 1.41870 1.85817 1.77276 1.30348 1.16668 1.13746 1.11362 1.18819 0.96874 0.91816 0.94467 1.21500 1.09690 0.95562 1.30911 0.90579 1.26101 0.97476 1.02058 0.94662 1.70094 1.29309 1.24709 1.33225 0.85398 0.78781 0.77415 0.78863 1.18946 1.21131 1.18721 1.21279 0.96810 0.95306 0.98640 1.84578 0.94227 1.14057 1.59936 0.80481 0.79804 0.82344 0.82926 0.85075 0.89284 0.88743 0.74017 0.83696 0.83939 0.97648 0.97347 0.92466 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.42 18.54 19.00 0.35 -10.07 16 2 C 0.30 5.25 15.81 88.33 1.40 6.65 16 3 C -0.19 -2.24 6.31 23.14 0.15 -2.09 16 4 C -0.04 -0.23 10.11 21.59 0.22 -0.01 16 5 C -0.13 -0.68 9.66 21.52 0.21 -0.47 16 6 C -0.12 -1.12 6.41 24.35 0.16 -0.96 16 7 C -0.04 -0.43 5.87 -20.10 -0.12 -0.55 16 8 C -0.08 -0.62 9.54 22.53 0.22 -0.41 16 9 C -0.12 -1.03 10.03 22.23 0.22 -0.81 16 10 C -0.10 -1.33 9.69 22.33 0.22 -1.11 16 11 C -0.10 -1.45 5.27 -19.90 -0.10 -1.55 16 12 C 0.14 2.51 6.25 85.63 0.54 3.05 16 13 N -1.10 -23.87 5.88 -190.79 -1.12 -24.99 16 14 S 2.62 86.44 5.46 -56.49 -0.31 86.13 16 15 O -1.00 -40.02 18.08 -127.65 -2.31 -42.32 16 16 O -0.99 -38.77 17.50 -127.65 -2.23 -41.00 16 17 C -0.59 -20.75 6.01 71.98 0.43 -20.32 16 18 C 0.02 0.97 4.98 29.85 0.15 1.12 16 19 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 20 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 21 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 22 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 23 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 27 C -0.10 -1.33 9.25 22.53 0.21 -1.13 16 28 S 0.20 2.38 22.18 -56.49 -1.25 1.13 16 29 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 30 H 0.18 -0.20 6.91 -2.91 -0.02 -0.22 16 31 H 0.16 0.19 6.76 -2.91 -0.02 0.17 16 32 H 0.15 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.09 1.64 7.64 -2.39 -0.02 1.62 16 35 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.42 7.78 8.61 -96.75 -0.83 6.95 16 37 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 38 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.13 1.57 7.27 -2.91 -0.02 1.55 16 Total: -1.00 -81.19 399.60 0.26 -80.92 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.25 Total: 8.73 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 4.58 Total: -47.34 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -0.48 Total: -91.16 kcal Atomic # 8 Polarization: -78.78 SS G_CDS: -4.54 Total: -83.32 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 88.82 SS G_CDS: -1.56 Total: 87.26 kcal Total: -81.19 0.26 -80.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.171 kcal (2) G-P(sol) polarization free energy of solvation -81.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds