Wall clock time and date at job start Tue Mar 31 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99229 * 2 1 4 4 O 1.20827 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99405 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46629 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00403 * 269.99650 * 6 5 3 8 8 H 1.07999 * 119.99982 * 142.43374 * 7 6 5 9 9 C 1.38815 * 120.00293 * 322.43983 * 7 6 5 10 10 N 1.31612 * 120.00489 * 157.84870 * 9 7 6 11 11 Si 1.86801 * 119.99370 * 337.84782 * 9 7 6 12 12 H 1.48501 * 109.47362 * 95.33376 * 11 9 7 13 13 H 1.48503 * 109.46719 * 215.33043 * 11 9 7 14 14 H 1.48497 * 109.47369 * 335.32836 * 11 9 7 15 15 C 1.46501 * 120.00015 * 90.00513 * 6 5 3 16 16 N 1.46505 * 109.47648 * 93.34624 * 15 6 5 17 17 N 1.40163 * 126.33097 * 268.60290 * 16 15 6 18 18 C 1.29431 * 108.14426 * 180.25819 * 17 16 15 19 19 N 1.37500 * 108.79635 * 0.02562 * 18 17 16 20 20 C 1.40128 * 125.83750 * 180.02562 * 19 18 17 21 21 C 1.38869 * 120.06857 * 64.71091 * 20 19 18 22 22 C 1.38095 * 119.93548 * 179.67607 * 21 20 19 23 23 C 1.38309 * 120.06213 * 0.61225 * 22 21 20 24 24 C 1.50694 * 119.92910 * 179.70511 * 23 22 21 25 25 C 1.38267 * 120.13661 * 359.67922 * 23 22 21 26 26 C 1.38132 * 120.06433 * 0.02562 * 25 23 22 27 27 C 1.50705 * 120.02670 * 180.02562 * 26 25 23 28 28 C 1.34816 * 108.31822 * 0.02562 * 19 18 17 29 29 S 1.71198 * 126.29777 * 179.97438 * 28 19 18 30 30 H 1.09001 * 109.47451 * 60.00705 * 1 2 3 31 31 H 1.09008 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47567 * 299.99800 * 1 2 3 33 33 H 1.08999 * 109.46949 * 59.99937 * 5 3 2 34 34 H 1.08998 * 109.47467 * 299.99517 * 5 3 2 35 35 H 0.97000 * 120.00125 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.46789 * 333.34898 * 15 6 5 37 37 H 1.09000 * 109.47363 * 213.34934 * 15 6 5 38 38 H 1.07998 * 125.60186 * 179.97438 * 18 17 16 39 39 H 1.08009 * 120.03062 * 359.96600 * 21 20 19 40 40 H 1.07996 * 119.96700 * 180.31527 * 22 21 20 41 41 H 1.09009 * 109.47045 * 269.97480 * 24 23 22 42 42 H 1.09000 * 109.47425 * 29.97264 * 24 23 22 43 43 H 1.09002 * 109.47126 * 149.98054 * 24 23 22 44 44 H 1.07999 * 119.96310 * 180.02562 * 25 23 22 45 45 H 1.08996 * 109.47133 * 269.97426 * 27 26 25 46 46 H 1.08998 * 109.47464 * 29.97912 * 27 26 25 47 47 H 1.09003 * 109.46889 * 149.97866 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9814 2.6799 -0.0002 7 6 4.1761 3.3358 -1.1863 8 1 3.8878 4.3720 -1.2841 9 6 4.7439 2.6689 -2.2633 10 7 4.5461 3.1083 -3.4880 11 14 5.7887 1.1477 -1.9740 12 1 4.9484 -0.0669 -2.1292 13 1 6.8964 1.1127 -2.9625 14 1 6.3520 1.1878 -0.6006 15 6 4.1886 3.3832 1.2682 16 7 5.5998 3.2938 1.6515 17 7 6.1809 2.3035 2.4554 18 6 7.4426 2.5677 2.5717 19 7 7.7223 3.7133 1.8646 20 6 8.9804 4.3194 1.7489 21 6 10.0151 3.6567 1.1018 22 6 11.2520 4.2594 0.9835 23 6 11.4644 5.5164 1.5199 24 6 12.8172 6.1684 1.3948 25 6 10.4379 6.1762 2.1700 26 6 9.1968 5.5811 2.2862 27 6 8.0784 6.3013 2.9945 28 6 6.5792 4.1536 1.3017 29 16 6.4028 5.5467 0.3224 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.9563 0.7807 -0.8891 34 1 3.9557 0.7812 0.8908 35 1 4.9432 2.6424 -4.2405 36 1 3.5723 2.9257 2.0422 37 1 3.9091 4.4304 1.1529 38 1 8.1579 1.9847 3.1326 39 1 9.8513 2.6729 0.6873 40 1 12.0556 3.7466 0.4759 41 1 13.4317 5.8981 2.2537 42 1 13.3017 5.8276 0.4798 43 1 12.6969 7.2513 1.3607 44 1 10.6067 7.1579 2.5874 45 1 8.0965 6.0474 4.0543 46 1 8.2067 7.3772 2.8763 47 1 7.1229 6.0000 2.5650 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071920449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:17 Heat of formation + Delta-G solvation = 79.321472 kcal Electronic energy + Delta-G solvation = -32766.466073 eV Core-core repulsion = 28465.644463 eV Total energy + Delta-G solvation = -4300.821610 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.136 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.43134 -39.82290 -39.55446 -36.81366 -35.65025 -34.91458 -33.05081 -32.27506 -31.53513 -31.50476 -28.82279 -27.40476 -27.33134 -26.47826 -25.91200 -23.27018 -23.10370 -22.20824 -21.58056 -20.84827 -20.45700 -18.52924 -17.52010 -17.06258 -16.67785 -16.31248 -16.18307 -15.84763 -15.68493 -15.24301 -15.18837 -15.09823 -14.64916 -14.27174 -14.09482 -14.00585 -13.32517 -13.30035 -13.26353 -13.07675 -12.76153 -12.66732 -12.46349 -12.23179 -12.00445 -11.90766 -11.76017 -11.58408 -11.42089 -11.33938 -11.12712 -10.89190 -10.59672 -10.46303 -10.42163 -10.33871 -10.15059 -9.90410 -9.86275 -8.92942 -8.82151 -8.59387 -7.60685 -6.94569 -6.65282 -6.19228 -3.65811 0.94172 1.24062 1.63772 1.93859 2.02019 2.84232 2.92250 2.99555 3.06756 3.23774 3.28797 3.30579 3.46205 4.25228 4.52285 4.55576 4.61995 4.66934 4.74549 4.83186 5.10097 5.13618 5.14943 5.33954 5.35129 5.38782 5.40468 5.41352 5.46870 5.55507 5.60720 5.63282 5.68019 5.71765 5.78228 5.78822 5.84573 5.88639 6.09551 6.14185 6.26304 6.39839 6.43465 6.58737 6.81464 6.87704 7.10780 7.49135 7.69947 8.06886 8.40261 8.74293 9.39629 9.58834 10.93245 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003027 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.193166 B = 9247.556690 C = 9746.734138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.435 3.565 4 O -0.486 6.486 5 C 0.132 3.868 6 N -0.538 5.538 7 C -0.264 4.264 8 H 0.107 0.893 9 C 0.055 3.945 10 N -0.867 5.867 11 Si 0.857 3.143 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.270 1.270 15 C 0.363 3.637 16 N -0.370 5.370 17 N -0.286 5.286 18 C 0.231 3.769 19 N -0.461 5.461 20 C 0.120 3.880 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.070 4.070 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.034 4.034 27 C -0.130 4.130 28 C 0.464 3.536 29 S -0.557 6.557 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.228 0.772 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.979 -2.802 15.268 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.291 6.291 3 C 0.274 3.726 4 O -0.371 6.371 5 C 0.004 3.996 6 N -0.253 5.253 7 C -0.393 4.393 8 H 0.125 0.875 9 C -0.150 4.150 10 N -0.504 5.504 11 Si 0.686 3.314 12 H -0.207 1.207 13 H -0.218 1.218 14 H -0.195 1.195 15 C 0.158 3.842 16 N -0.170 5.170 17 N -0.105 5.105 18 C -0.069 4.069 19 N -0.160 5.160 20 C 0.029 3.971 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.071 4.071 24 C -0.171 4.171 25 C -0.132 4.132 26 C -0.036 4.036 27 C -0.187 4.187 28 C 0.107 3.893 29 S -0.427 6.427 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.244 0.756 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.148 0.852 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.609 -2.342 14.648 17.674 hybrid contribution 1.200 -1.442 0.055 1.877 sum 10.809 -3.785 14.703 18.637 Atomic orbital electron populations 1.23111 0.77933 1.02662 1.02153 1.86568 1.22445 1.35127 1.84940 1.25610 0.93481 0.81071 0.72415 1.90611 1.66591 1.36182 1.43686 1.21213 0.86100 0.88466 1.03819 1.44712 1.68459 1.08368 1.03806 1.19031 1.36490 0.98663 0.85101 0.87525 1.25424 0.96834 0.97367 0.95329 1.69814 1.42159 1.40558 0.97877 0.87254 0.82078 0.83624 0.78484 1.20693 1.21772 1.19531 1.22496 0.74114 1.00681 0.86946 1.53212 1.10537 1.16125 1.37162 1.77028 1.06342 1.13890 1.13215 1.26283 0.94720 0.88845 0.97060 1.43690 1.07589 1.22626 1.42108 1.17134 0.82156 0.94338 1.03464 1.21083 0.92648 1.00592 0.97032 1.20813 0.96561 0.95183 1.01183 1.20010 0.96084 0.94366 0.96606 1.20812 0.93170 1.00733 1.02426 1.20802 0.91515 1.00191 1.00708 1.19864 0.95503 0.92508 0.95692 1.21169 0.98280 1.00598 0.98691 1.24344 0.81743 0.93937 0.89265 1.93271 1.91678 1.14314 1.43477 0.92203 0.88973 0.92509 0.88510 0.89003 0.92140 0.89512 0.86275 0.75564 0.85523 0.85289 0.91024 0.91311 0.91260 0.85230 0.91850 0.90779 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.55 101.05 1.07 1.56 16 2 O -0.37 -6.61 10.57 -39.26 -0.41 -7.02 16 3 C 0.44 8.91 8.03 36.01 0.29 9.20 16 4 O -0.49 -11.14 16.18 -18.75 -0.30 -11.44 16 5 C 0.13 2.75 5.08 -5.19 -0.03 2.73 16 6 N -0.54 -12.31 1.81 -178.32 -0.32 -12.63 16 7 C -0.26 -7.21 9.83 -15.06 -0.15 -7.36 16 8 H 0.11 3.29 8.06 -52.49 -0.42 2.87 16 9 C 0.05 1.55 5.31 -17.43 -0.09 1.45 16 10 N -0.87 -26.18 13.97 55.49 0.78 -25.40 16 11 Si 0.86 21.30 25.03 -169.99 -4.26 17.04 16 12 H -0.28 -6.58 6.67 56.52 0.38 -6.21 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.36 7.19 6.75 -63.74 -0.43 6.76 16 16 N -0.37 -7.08 3.86 -65.17 -0.25 -7.33 16 17 N -0.29 -4.64 12.53 29.90 0.37 -4.27 16 18 C 0.23 3.10 12.54 -88.96 -1.12 1.99 16 19 N -0.46 -7.45 2.40 -62.93 -0.15 -7.60 16 20 C 0.12 1.74 5.36 -83.61 -0.45 1.30 16 21 C -0.09 -1.21 9.90 -39.40 -0.39 -1.60 16 22 C -0.12 -1.28 9.69 -39.61 -0.38 -1.67 16 23 C -0.07 -0.72 5.88 -104.59 -0.62 -1.34 16 24 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 25 C -0.11 -1.27 9.35 -39.61 -0.37 -1.64 16 26 C -0.03 -0.46 5.67 -104.44 -0.59 -1.05 16 27 C -0.13 -1.73 9.50 36.01 0.34 -1.39 16 28 C 0.46 9.25 6.39 -86.74 -0.55 8.70 16 29 S -0.56 -13.07 27.71 -107.50 -2.98 -16.05 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.10 2.20 3.25 -51.93 -0.17 2.03 16 34 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 35 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 36 H 0.09 1.48 8.05 -51.93 -0.42 1.07 16 37 H 0.12 2.48 7.65 -51.93 -0.40 2.08 16 38 H 0.23 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 47 H 0.09 1.47 4.23 -51.89 -0.22 1.25 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -36.26 409.58 -10.73 -46.99 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.27 Total: 4.37 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: -3.11 Total: 17.17 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.42 Total: -57.23 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.72 Total: -18.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.26 Total: 17.04 kcal Atomic # 16 Polarization: -13.07 SS G_CDS: -2.98 Total: -16.05 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.26 -10.73 -46.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071920449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.314 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds