Wall clock time and date at job start Tue Mar 31 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99229 * 2 1 4 4 O 1.20827 * 120.00427 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99405 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46629 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00403 * 269.99650 * 6 5 3 8 8 H 1.07999 * 119.99982 * 142.43374 * 7 6 5 9 9 C 1.38815 * 120.00293 * 322.43983 * 7 6 5 10 10 N 1.31612 * 120.00489 * 157.84870 * 9 7 6 11 11 Si 1.86801 * 119.99370 * 337.84782 * 9 7 6 12 12 H 1.48501 * 109.47362 * 95.33376 * 11 9 7 13 13 H 1.48503 * 109.46719 * 215.33043 * 11 9 7 14 14 H 1.48497 * 109.47369 * 335.32836 * 11 9 7 15 15 C 1.46501 * 120.00015 * 90.00513 * 6 5 3 16 16 N 1.46505 * 109.47648 * 93.34624 * 15 6 5 17 17 N 1.40163 * 126.33097 * 268.60290 * 16 15 6 18 18 C 1.29431 * 108.14426 * 180.25819 * 17 16 15 19 19 N 1.37500 * 108.79635 * 0.02562 * 18 17 16 20 20 C 1.40128 * 125.83750 * 180.02562 * 19 18 17 21 21 C 1.38869 * 120.06857 * 64.71091 * 20 19 18 22 22 C 1.38095 * 119.93548 * 179.67607 * 21 20 19 23 23 C 1.38309 * 120.06213 * 0.61225 * 22 21 20 24 24 C 1.50694 * 119.92910 * 179.70511 * 23 22 21 25 25 C 1.38267 * 120.13661 * 359.67922 * 23 22 21 26 26 C 1.38132 * 120.06433 * 0.02562 * 25 23 22 27 27 C 1.50705 * 120.02670 * 180.02562 * 26 25 23 28 28 C 1.34816 * 108.31822 * 0.02562 * 19 18 17 29 29 S 1.71198 * 126.29777 * 179.97438 * 28 19 18 30 30 H 1.09001 * 109.47451 * 60.00705 * 1 2 3 31 31 H 1.09008 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47567 * 299.99800 * 1 2 3 33 33 H 1.08999 * 109.46949 * 59.99937 * 5 3 2 34 34 H 1.08998 * 109.47467 * 299.99517 * 5 3 2 35 35 H 0.97000 * 120.00125 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.46789 * 333.34898 * 15 6 5 37 37 H 1.09000 * 109.47363 * 213.34934 * 15 6 5 38 38 H 1.07998 * 125.60186 * 179.97438 * 18 17 16 39 39 H 1.08009 * 120.03062 * 359.96600 * 21 20 19 40 40 H 1.07996 * 119.96700 * 180.31527 * 22 21 20 41 41 H 1.09009 * 109.47045 * 269.97480 * 24 23 22 42 42 H 1.09000 * 109.47425 * 29.97264 * 24 23 22 43 43 H 1.09002 * 109.47126 * 149.98054 * 24 23 22 44 44 H 1.07999 * 119.96310 * 180.02562 * 25 23 22 45 45 H 1.08996 * 109.47133 * 269.97426 * 27 26 25 46 46 H 1.08998 * 109.47464 * 29.97912 * 27 26 25 47 47 H 1.09003 * 109.46889 * 149.97866 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9814 2.6799 -0.0002 7 6 4.1761 3.3358 -1.1863 8 1 3.8878 4.3720 -1.2841 9 6 4.7439 2.6689 -2.2633 10 7 4.5461 3.1083 -3.4880 11 14 5.7887 1.1477 -1.9740 12 1 4.9484 -0.0669 -2.1292 13 1 6.8964 1.1127 -2.9625 14 1 6.3520 1.1878 -0.6006 15 6 4.1886 3.3832 1.2682 16 7 5.5998 3.2938 1.6515 17 7 6.1809 2.3035 2.4554 18 6 7.4426 2.5677 2.5717 19 7 7.7223 3.7133 1.8646 20 6 8.9804 4.3194 1.7489 21 6 10.0151 3.6567 1.1018 22 6 11.2520 4.2594 0.9835 23 6 11.4644 5.5164 1.5199 24 6 12.8172 6.1684 1.3948 25 6 10.4379 6.1762 2.1700 26 6 9.1968 5.5811 2.2862 27 6 8.0784 6.3013 2.9945 28 6 6.5792 4.1536 1.3017 29 16 6.4028 5.5467 0.3224 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.9563 0.7807 -0.8891 34 1 3.9557 0.7812 0.8908 35 1 4.9432 2.6424 -4.2405 36 1 3.5723 2.9257 2.0422 37 1 3.9091 4.4304 1.1529 38 1 8.1579 1.9847 3.1326 39 1 9.8513 2.6729 0.6873 40 1 12.0556 3.7466 0.4759 41 1 13.4317 5.8981 2.2537 42 1 13.3017 5.8276 0.4798 43 1 12.6969 7.2513 1.3607 44 1 10.6067 7.1579 2.5874 45 1 8.0965 6.0474 4.0543 46 1 8.2067 7.3772 2.8763 47 1 7.1229 6.0000 2.5650 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071920449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:15 Heat of formation + Delta-G solvation = 59.915448 kcal Electronic energy + Delta-G solvation = -32767.307582 eV Core-core repulsion = 28465.644463 eV Total energy + Delta-G solvation = -4301.663118 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.136 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.82884 -41.37712 -40.54449 -38.43375 -37.16315 -36.24822 -34.39344 -33.75501 -33.17588 -32.51327 -30.34251 -28.79330 -28.23192 -27.84248 -27.25378 -24.88598 -24.23774 -23.58077 -22.87563 -22.18062 -21.80908 -19.72915 -19.33939 -18.71637 -18.09644 -17.75199 -17.66234 -17.34548 -17.09847 -16.88846 -16.56510 -16.15576 -15.94240 -15.54850 -15.13085 -15.04743 -14.87862 -14.67180 -14.52410 -14.20239 -14.15414 -14.04916 -13.57140 -13.48084 -13.34069 -13.01926 -13.00930 -12.88980 -12.77017 -12.65557 -12.39050 -12.29295 -12.23213 -12.21441 -11.95444 -11.73466 -11.68712 -11.61217 -11.51778 -10.82208 -9.83560 -9.56436 -9.50484 -8.71350 -8.45723 -8.28374 -5.79178 -0.09450 0.11841 0.33331 0.47266 0.82161 1.09918 1.19226 1.25034 1.35160 1.36813 1.67603 1.84303 2.21779 2.54573 2.79489 3.07150 3.28456 3.72851 3.74273 3.77890 3.91519 3.95955 4.00626 4.04800 4.15628 4.21751 4.30703 4.34253 4.35640 4.40324 4.44423 4.56705 4.62821 4.67157 4.69336 4.73821 4.90460 4.99144 5.13788 5.22813 5.24715 5.29770 5.39025 5.42903 5.57966 5.64314 5.66864 5.99841 6.05075 6.22766 6.57334 6.88691 7.30187 7.57115 8.87122 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003027 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.193166 B = 9247.556690 C = 9746.734138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.440 3.560 4 O -0.520 6.520 5 C 0.133 3.867 6 N -0.555 5.555 7 C -0.244 4.244 8 H 0.051 0.949 9 C -0.003 4.003 10 N -0.928 5.928 11 Si 0.924 3.076 12 H -0.256 1.256 13 H -0.305 1.305 14 H -0.261 1.261 15 C 0.375 3.625 16 N -0.375 5.375 17 N -0.295 5.295 18 C 0.258 3.742 19 N -0.449 5.449 20 C 0.084 3.916 21 C -0.101 4.101 22 C -0.119 4.119 23 C -0.063 4.063 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.047 4.047 27 C -0.125 4.125 28 C 0.475 3.525 29 S -0.650 6.650 30 H 0.048 0.952 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.266 0.734 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.290 0.710 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.150 0.850 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 -5.779 18.456 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.281 3.719 4 O -0.407 6.407 5 C 0.006 3.994 6 N -0.273 5.273 7 C -0.374 4.374 8 H 0.069 0.931 9 C -0.201 4.201 10 N -0.570 5.570 11 Si 0.752 3.248 12 H -0.182 1.182 13 H -0.233 1.233 14 H -0.185 1.185 15 C 0.170 3.830 16 N -0.172 5.172 17 N -0.114 5.114 18 C -0.041 4.041 19 N -0.146 5.146 20 C -0.005 4.005 21 C -0.120 4.120 22 C -0.137 4.137 23 C -0.063 4.063 24 C -0.170 4.170 25 C -0.137 4.137 26 C -0.049 4.049 27 C -0.182 4.182 28 C 0.112 3.888 29 S -0.522 6.522 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.305 0.695 39 H 0.149 0.851 40 H 0.174 0.826 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.168 0.832 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.480 -5.376 17.910 22.482 hybrid contribution 0.409 -0.496 -0.643 0.909 sum 12.890 -5.872 17.267 22.333 Atomic orbital electron populations 1.23495 0.75404 1.05515 1.02085 1.86523 1.24769 1.33172 1.84189 1.25404 0.93493 0.81353 0.71656 1.90609 1.67280 1.37458 1.45378 1.21221 0.86513 0.86989 1.04704 1.44520 1.70445 1.09216 1.03096 1.18464 1.35324 0.96555 0.87017 0.93124 1.25981 0.98258 1.01081 0.94779 1.69965 1.44723 1.43392 0.98889 0.86162 0.79870 0.80782 0.78006 1.18202 1.23328 1.18525 1.22059 0.74203 0.99777 0.86946 1.52296 1.10466 1.16898 1.37581 1.77083 1.07632 1.12829 1.13813 1.27575 0.94582 0.87227 0.94691 1.43687 1.07230 1.22855 1.40787 1.17428 0.81467 0.95529 1.06120 1.21226 0.92998 1.00920 0.96892 1.21175 0.96441 0.95432 1.00666 1.20433 0.97185 0.94009 0.94692 1.20898 0.91467 1.00909 1.03773 1.21093 0.90903 1.01015 1.00656 1.19992 0.96364 0.92287 0.96209 1.21057 0.96693 1.00900 0.99587 1.23609 0.83265 0.93066 0.88815 1.93415 1.92720 1.18358 1.47700 0.93303 0.84642 0.91676 0.89997 0.85314 0.92494 0.86007 0.88550 0.69510 0.85143 0.82607 0.88985 0.90382 0.90620 0.83227 0.89956 0.90392 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.55 113.37 1.20 1.91 16 2 O -0.37 -12.28 10.57 -51.44 -0.54 -12.82 16 3 C 0.44 17.62 8.03 71.24 0.57 18.20 16 4 O -0.52 -24.06 16.18 21.96 0.36 -23.71 16 5 C 0.13 5.35 5.08 85.63 0.43 5.79 16 6 N -0.55 -25.76 1.81 -718.08 -1.30 -27.05 16 7 C -0.24 -14.06 9.83 84.03 0.83 -13.23 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 9 C 0.00 -0.15 5.31 84.86 0.45 0.30 16 10 N -0.93 -59.52 13.97 21.65 0.30 -59.22 16 11 Si 0.92 44.92 25.03 68.60 1.72 46.64 16 12 H -0.26 -11.31 6.67 99.48 0.66 -10.64 16 13 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 15 C 0.38 15.02 6.75 170.96 1.15 16.17 16 16 N -0.38 -14.07 3.86 -360.11 -1.39 -15.46 16 17 N -0.29 -8.61 12.53 -59.31 -0.74 -9.35 16 18 C 0.26 5.92 12.54 179.77 2.26 8.17 16 19 N -0.45 -13.77 2.40 -353.01 -0.85 -14.61 16 20 C 0.08 2.31 5.36 38.11 0.20 2.52 16 21 C -0.10 -2.36 9.90 22.39 0.22 -2.13 16 22 C -0.12 -2.19 9.69 22.25 0.22 -1.97 16 23 C -0.06 -1.09 5.88 -19.84 -0.12 -1.21 16 24 C -0.11 -1.19 10.01 71.23 0.71 -0.48 16 25 C -0.12 -2.38 9.35 22.25 0.21 -2.17 16 26 C -0.05 -1.20 5.67 -19.75 -0.11 -1.31 16 27 C -0.13 -3.30 9.50 71.24 0.68 -2.62 16 28 C 0.47 19.05 6.39 178.99 1.14 20.20 16 29 S -0.65 -32.46 27.71 -56.49 -1.57 -34.02 16 30 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.08 3.59 3.25 -2.39 -0.01 3.59 16 34 H 0.13 4.18 8.07 -2.39 -0.02 4.16 16 35 H 0.27 16.08 8.31 -92.71 -0.77 15.30 16 36 H 0.12 4.00 8.05 -2.38 -0.02 3.98 16 37 H 0.10 4.28 7.65 -2.39 -0.02 4.27 16 38 H 0.29 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 43 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 44 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 47 H 0.05 1.87 4.23 -2.41 -0.01 1.86 16 Total: -1.00 -88.02 409.58 6.99 -81.03 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.96 Total: 20.47 kcal Atomic # 6 Polarization: 38.07 SS G_CDS: 10.04 Total: 48.11 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -3.98 Total: -125.71 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.19 Total: -36.53 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.72 Total: 46.64 kcal Atomic # 16 Polarization: -32.46 SS G_CDS: -1.57 Total: -34.02 kcal Total: -88.02 6.99 -81.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071920449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.948 kcal (2) G-P(sol) polarization free energy of solvation -88.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds