Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33335 * 119.99855 * 2 1 4 4 H 1.08003 * 119.99444 * 185.16866 * 3 2 1 5 5 C 1.46782 * 120.00029 * 5.16615 * 3 2 1 6 6 N 1.29310 * 120.00096 * 5.16306 * 5 3 2 7 7 Si 1.86803 * 119.99792 * 185.16062 * 5 3 2 8 8 H 1.48497 * 109.47306 * 60.00291 * 7 5 3 9 9 H 1.48500 * 109.46665 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47160 * 300.00000 * 7 5 3 11 11 C 1.34779 * 120.00034 * 180.02562 * 2 1 3 12 12 O 1.21480 * 119.99628 * 185.60643 * 11 2 1 13 13 C 1.47647 * 120.00043 * 5.60266 * 11 2 1 14 14 C 1.39705 * 120.15543 * 54.85080 * 13 11 2 15 15 C 1.37889 * 119.84895 * 180.27087 * 14 13 11 16 16 C 1.38428 * 120.17326 * 0.02562 * 15 14 13 17 17 N 1.48023 * 119.83817 * 179.97438 * 16 15 14 18 18 O 1.31699 * 119.99537 * 180.02562 * 17 16 15 19 19 O 1.31693 * 119.99984 * 0.02562 * 17 16 15 20 20 C 1.38318 * 120.32007 * 359.97438 * 16 15 14 21 21 C 1.38038 * 120.15142 * 0.02562 * 20 16 15 22 22 I 2.09499 * 120.09203 * 179.97438 * 21 20 16 23 23 H 1.09000 * 109.47136 * 175.11917 * 1 2 3 24 24 H 1.08997 * 109.46722 * 295.11836 * 1 2 3 25 25 H 1.09000 * 109.47016 * 55.11672 * 1 2 3 26 26 H 0.97005 * 120.00224 * 180.02562 * 6 5 3 27 27 H 1.08004 * 120.07978 * 0.27591 * 14 13 11 28 28 H 1.08003 * 119.91275 * 179.97438 * 15 14 13 29 29 H 1.08003 * 119.92203 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1317 1.1547 0.0000 4 1 3.2084 1.1566 -0.0843 5 6 1.4022 2.4233 0.1145 6 7 0.1248 2.4188 0.3155 7 14 2.3192 4.0443 -0.0302 8 1 2.9738 4.1258 -1.3606 9 1 1.3620 5.1696 0.1208 10 1 3.3507 4.1262 1.0349 11 6 2.1389 -1.1672 -0.0005 12 8 3.3494 -1.1697 0.1023 13 6 1.4060 -2.4428 -0.1259 14 6 0.5403 -2.6519 -1.2023 15 6 -0.1453 -3.8434 -1.3102 16 6 0.0219 -4.8313 -0.3550 17 7 -0.7182 -6.1073 -0.4779 18 8 -0.5618 -7.0491 0.4294 19 8 -1.5330 -6.3007 -1.4943 20 6 0.8772 -4.6318 0.7135 21 6 1.5701 -3.4441 0.8346 22 53 2.8645 -3.1436 2.4543 23 1 -0.3633 -1.0239 -0.0874 24 1 -0.3633 0.4362 0.9305 25 1 -0.3633 0.5877 -0.8430 26 1 -0.3574 3.2571 0.3907 27 1 0.4083 -1.8821 -1.9483 28 1 -0.8152 -4.0059 -2.1417 29 1 1.0031 -5.4071 1.4548 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072072123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = 47.984919 kcal Electronic energy + Delta-G solvation = -19436.145305 eV Core-core repulsion = 15996.108931 eV Total energy + Delta-G solvation = -3440.036374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 375.975 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.81888 -40.38247 -39.03300 -36.83668 -35.66092 -34.22226 -33.82193 -32.98568 -29.44051 -28.75900 -27.99307 -26.22389 -24.11584 -23.54088 -21.38617 -19.68087 -19.30774 -19.21504 -18.43208 -17.19097 -17.08206 -16.83426 -16.18242 -15.79595 -15.52741 -15.17007 -14.65868 -14.44843 -14.14435 -13.65318 -13.51871 -12.98634 -12.79402 -12.62146 -12.45033 -12.37139 -12.32626 -12.11237 -11.93712 -11.70974 -11.19630 -10.97627 -10.59696 -10.31991 -10.24788 -10.14775 -8.59548 -5.76190 -2.00789 -0.43477 -0.28138 -0.26900 0.10520 1.31055 1.42222 1.48881 1.70445 2.09332 2.19636 2.76949 2.92063 3.18916 3.33388 3.58346 3.63014 3.68833 4.10788 4.31506 4.38931 4.48224 4.61075 4.74774 5.01035 5.05808 5.08984 5.34544 5.52685 5.79943 6.26855 7.01478 7.27992 7.98278 8.31247 Molecular weight = 375.98amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.004763 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.313287 B = 5877.190476 C = 7698.289012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.393 5.393 3 C -0.363 4.363 4 H 0.091 0.909 5 C 0.018 3.982 6 N -0.834 5.834 7 Si 0.995 3.005 8 H -0.265 1.265 9 H -0.263 1.263 10 H -0.272 1.272 11 C 0.404 3.596 12 O -0.609 6.609 13 C -0.005 4.005 14 C -0.097 4.097 15 C -0.015 4.015 16 C -0.021 4.021 17 N -0.007 5.007 18 O -0.205 6.205 19 O -0.173 6.173 20 C -0.008 4.008 21 C -0.104 4.104 22 I 0.005 6.995 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.292 0.708 27 H 0.173 0.827 28 H 0.191 0.809 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -6.661 1.269 7.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.104 5.104 3 C -0.492 4.492 4 H 0.109 0.891 5 C -0.195 4.195 6 N -0.467 5.467 7 Si 0.817 3.183 8 H -0.190 1.190 9 H -0.187 1.187 10 H -0.197 1.197 11 C 0.196 3.804 12 O -0.499 6.499 13 C -0.012 4.012 14 C -0.118 4.118 15 C -0.034 4.034 16 C -0.110 4.110 17 N 0.467 4.533 18 O -0.391 6.391 19 O -0.368 6.368 20 C -0.030 4.030 21 C -0.246 4.246 22 I 0.154 6.846 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.190 0.810 28 H 0.209 0.791 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.412 -5.739 2.578 6.305 hybrid contribution -0.598 0.191 -0.843 1.051 sum -1.010 -5.547 1.735 5.899 Atomic orbital electron populations 1.22040 0.78828 0.99343 1.03929 1.42852 1.07174 1.04814 1.55561 1.20746 0.93395 0.82905 1.52178 0.89112 1.27651 0.95928 1.02364 0.93597 1.69149 1.09019 1.31004 1.37479 0.84968 0.78318 0.75501 0.79539 1.18996 1.18684 1.19741 1.17684 0.87666 0.83108 0.91934 1.90633 1.13824 1.85727 1.59692 1.20609 0.92576 0.94485 0.93529 1.21591 0.94827 0.97734 0.97695 1.21344 0.96108 0.89182 0.96778 1.20380 1.03171 0.84766 1.02716 1.50489 0.99073 1.03221 1.00513 1.96277 1.72517 1.36502 1.33827 1.96246 1.32159 1.88073 1.20345 1.20854 0.90400 0.96096 0.95646 1.24376 1.03666 0.95797 1.00720 1.96802 1.59771 1.98128 1.29909 0.92002 0.91807 0.91306 0.89523 0.80961 0.79139 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.89 8.28 127.77 1.06 4.95 15 2 N -0.39 -17.76 2.93 -657.49 -1.93 -19.69 15 3 C -0.36 -18.00 9.76 86.70 0.85 -17.15 15 4 H 0.09 4.90 7.24 -2.91 -0.02 4.88 15 5 C 0.02 0.80 5.59 87.30 0.49 1.29 15 6 N -0.83 -36.18 9.62 23.25 0.22 -35.96 15 7 Si 0.99 36.00 29.65 68.60 2.03 38.03 15 8 H -0.27 -9.56 7.11 99.48 0.71 -8.86 15 9 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 10 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 11 C 0.40 17.72 6.29 86.73 0.55 18.26 15 12 O -0.61 -30.82 15.18 -3.65 -0.06 -30.88 15 13 C 0.00 -0.16 4.68 -20.08 -0.09 -0.25 15 14 C -0.10 -2.58 7.56 22.54 0.17 -2.41 15 15 C -0.01 -0.33 9.56 22.23 0.21 -0.12 15 16 C -0.02 -0.56 6.89 36.44 0.25 -0.30 15 17 N -0.01 -0.21 4.98 -46.30 -0.23 -0.44 15 18 O -0.21 -6.45 19.14 3.52 0.07 -6.38 15 19 O -0.17 -5.07 19.14 3.53 0.07 -5.00 15 20 C -0.01 -0.21 9.27 22.24 0.21 -0.01 15 21 C -0.10 -3.31 6.23 22.58 0.14 -3.17 15 22 I 0.00 0.16 38.05 -18.82 -0.72 -0.56 15 23 H 0.06 1.97 4.81 -2.39 -0.01 1.96 15 24 H 0.06 2.67 6.91 -2.39 -0.02 2.66 15 25 H 0.07 2.67 7.24 -2.39 -0.02 2.65 15 26 H 0.29 11.61 8.26 -92.70 -0.77 10.84 15 27 H 0.17 4.05 7.81 -2.91 -0.02 4.03 15 28 H 0.19 3.15 7.56 -2.91 -0.02 3.12 15 29 H 0.17 4.20 7.56 -2.91 -0.02 4.17 15 Total: -1.00 -56.33 291.51 4.51 -51.82 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.22 Total: 7.96 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 3.82 Total: 1.09 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -1.93 Total: -56.08 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: 0.08 Total: -42.26 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 53 Polarization: 0.16 SS G_CDS: -0.72 Total: -0.56 kcal Total: -56.33 4.51 -51.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.802 kcal (2) G-P(sol) polarization free energy of solvation -56.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds