Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35763 * 116.99858 * 2 1 4 4 C 1.35944 * 126.19537 * 90.12294 * 3 2 1 5 5 C 1.50697 * 126.08537 * 0.23286 * 4 3 2 6 6 H 1.08998 * 110.36488 * 15.88994 * 5 4 3 7 7 C 1.54384 * 110.40978 * 253.54808 * 5 4 3 8 8 C 1.54262 * 105.05595 * 217.36323 * 7 5 4 9 9 C 1.54373 * 105.06249 * 359.97438 * 8 7 5 10 10 N 1.48551 * 110.41571 * 138.36966 * 5 4 3 11 11 C 1.46897 * 111.00259 * 277.82131 * 10 5 4 12 12 C 1.53003 * 109.47446 * 169.99897 * 11 10 5 13 13 C 1.50703 * 109.47031 * 180.02562 * 12 11 10 14 14 O 1.21293 * 120.00208 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99503 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99730 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99582 * 22.78731 * 16 15 13 18 18 C 1.38943 * 120.00019 * 202.78734 * 16 15 13 19 19 N 1.31410 * 120.00004 * 8.00220 * 18 16 15 20 20 Si 1.86804 * 120.00186 * 187.99748 * 18 16 15 21 21 H 1.48507 * 109.46546 * 60.00221 * 20 18 16 22 22 H 1.48498 * 109.47368 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47235 * 300.00728 * 20 18 16 24 24 C 1.46494 * 120.00453 * 359.97438 * 15 13 12 25 25 C 1.47199 * 109.46916 * 83.25469 * 24 15 13 26 26 N 9.71283 * 129.51409 * 78.09471 * 2 1 3 27 27 C 1.39825 * 107.83474 * 180.26724 * 4 3 2 28 28 C 1.50702 * 125.85922 * 180.02562 * 27 4 3 29 29 N 1.30831 * 108.28079 * 359.97438 * 27 4 3 30 30 N 1.35134 * 126.18869 * 270.43816 * 3 2 1 31 31 C 1.46504 * 126.03961 * 359.75521 * 30 3 2 32 32 H 1.09004 * 109.47489 * 304.96465 * 1 2 3 33 33 H 1.09001 * 109.47199 * 64.96234 * 1 2 3 34 34 H 1.09001 * 109.47189 * 184.96201 * 1 2 3 35 35 H 1.09000 * 110.32339 * 336.25991 * 7 5 4 36 36 H 1.09000 * 110.32610 * 98.47013 * 7 5 4 37 37 H 1.09007 * 110.32081 * 118.89478 * 8 7 5 38 38 H 1.08998 * 110.32798 * 241.00029 * 8 7 5 39 39 H 1.09001 * 110.41244 * 142.62614 * 9 8 7 40 40 H 1.09001 * 110.41595 * 265.07315 * 9 8 7 41 41 H 1.09000 * 109.47317 * 289.99748 * 11 10 5 42 42 H 1.09005 * 109.47158 * 49.99888 * 11 10 5 43 43 H 1.09000 * 109.46741 * 300.00204 * 12 11 10 44 44 H 1.08991 * 109.46878 * 59.99798 * 12 11 10 45 45 H 0.97001 * 119.99862 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.47556 * 203.25729 * 24 15 13 47 47 H 1.09001 * 109.47257 * 323.26034 * 24 15 13 48 48 H 1.09001 * 109.46480 * 269.96719 * 28 27 4 49 49 H 1.08999 * 109.46838 * 29.96162 * 28 27 4 50 50 H 1.08993 * 109.47162 * 149.96929 * 28 27 4 51 51 H 1.09004 * 109.46734 * 94.92032 * 31 30 3 52 52 H 1.09002 * 109.46804 * 214.91865 * 31 30 3 53 53 H 1.08998 * 109.47081 * 334.92206 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 2.4118 1.9239 1.0971 5 6 2.2108 1.5116 2.5325 6 1 1.9864 0.4467 2.5935 7 6 1.0770 2.3383 3.1764 8 6 1.5398 2.5924 4.6259 9 6 2.9138 1.8974 4.7360 10 7 3.4155 1.8367 3.3386 11 6 4.4428 0.7968 3.1930 12 6 5.7493 1.2782 3.8272 13 6 6.8033 0.2116 3.6772 14 8 6.5357 -0.8312 3.1185 15 7 8.0431 0.4161 4.1648 16 6 9.0018 -0.5545 4.0288 17 1 8.9125 -1.2962 3.2489 18 6 10.0884 -0.5838 4.8943 19 7 10.1199 0.2160 5.9366 20 14 11.5043 -1.7601 4.5765 21 1 12.1079 -1.4618 3.2529 22 1 12.5313 -1.5964 5.6366 23 1 10.9995 -3.1567 4.5869 24 6 8.3662 1.6753 4.8400 25 6 7.9384 1.6016 6.2465 26 7 7.6089 1.5458 7.3320 27 6 3.0079 3.1096 0.6567 28 6 3.5632 4.1988 1.5378 29 7 3.0019 3.1106 -0.6516 30 7 2.4001 1.9244 -1.0906 31 6 2.1921 1.5285 -2.4857 32 1 -0.3634 0.5889 0.8422 33 1 -0.3634 0.4349 -0.9311 34 1 -0.3633 -1.0238 0.0889 35 1 0.9506 3.2833 2.6481 36 1 0.1454 1.7726 3.1702 37 1 1.6406 3.6623 4.8090 38 1 0.8344 2.1530 5.3311 39 1 3.5892 2.4864 5.3566 40 1 2.8002 0.8929 5.1437 41 1 4.1110 -0.1140 3.6915 42 1 4.6060 0.5930 2.1347 43 1 6.0811 2.1890 3.3287 44 1 5.5861 1.4820 4.8853 45 1 10.8783 0.1953 6.5410 46 1 9.4418 1.8458 4.7958 47 1 7.8476 2.4965 4.3451 48 1 2.7798 4.9249 1.7551 49 1 3.9240 3.7636 2.4697 50 1 4.3871 4.6957 1.0257 51 1 1.2643 1.9670 -2.8533 52 1 3.0262 1.8820 -3.0919 53 1 2.1309 0.4421 -2.5499 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072253797.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = 39.868728 kcal Electronic energy + Delta-G solvation = -35860.176556 eV Core-core repulsion = 31348.443033 eV Total energy + Delta-G solvation = -4511.733524 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.206 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.54997 -40.74157 -39.68633 -39.05352 -37.58189 -36.16865 -34.83877 -34.26015 -33.59131 -31.83360 -30.47109 -30.24961 -29.05808 -29.00706 -27.52589 -26.74592 -26.04886 -24.28881 -22.38156 -21.88757 -21.52239 -20.55362 -20.39369 -19.67218 -18.51600 -18.23877 -17.95267 -17.32622 -17.01909 -16.79865 -16.40873 -16.18404 -15.99141 -15.89255 -15.60576 -15.23572 -14.94043 -14.74018 -14.67633 -14.38147 -14.17788 -14.13883 -13.93892 -13.74805 -13.50568 -13.42805 -13.25285 -13.10604 -12.98867 -12.94116 -12.89221 -12.77540 -12.56591 -12.49725 -12.40488 -12.32529 -12.13054 -12.08194 -11.95711 -11.86361 -11.71049 -11.27285 -11.09054 -11.08084 -10.42227 -10.01562 -9.87724 -9.41541 -9.25054 -8.34648 -6.00718 0.59896 1.37402 1.41516 1.45816 1.54459 1.66778 1.86273 2.08124 2.30407 2.37225 2.64582 2.84470 3.06125 3.31172 3.60372 3.66708 3.81130 3.84553 4.06209 4.12459 4.17952 4.19717 4.26638 4.30470 4.32395 4.35085 4.39131 4.49299 4.53871 4.58972 4.60200 4.66270 4.69042 4.73959 4.86269 4.88213 5.00685 5.02635 5.05214 5.06496 5.09138 5.15016 5.21339 5.29389 5.34152 5.40654 5.44331 5.46733 5.86324 5.99059 6.05281 6.08798 6.43633 6.47921 6.74931 7.05580 7.13972 7.37140 7.94399 8.66412 Molecular weight = 375.21amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.002583 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.811914 B =10838.092767 C =11948.919143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.327 6.327 3 C 0.244 3.756 4 C -0.233 4.233 5 C 0.147 3.853 6 H 0.040 0.960 7 C -0.105 4.105 8 C -0.113 4.113 9 C 0.023 3.977 10 N -0.490 5.490 11 C 0.086 3.914 12 C -0.111 4.111 13 C 0.452 3.548 14 O -0.621 6.621 15 N -0.458 5.458 16 C -0.334 4.334 17 H 0.078 0.922 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.285 1.285 24 C 0.223 3.777 25 C 0.263 3.737 26 N -0.511 5.511 27 C 0.107 3.893 28 C -0.079 4.079 29 N -0.314 5.314 30 N -0.389 5.389 31 C 0.093 3.907 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.031 0.969 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.274 0.726 46 H 0.129 0.871 47 H 0.133 0.867 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.066 0.934 51 H 0.092 0.908 52 H 0.093 0.907 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.223 9.807 -11.143 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.237 6.237 3 C 0.075 3.925 4 C -0.246 4.246 5 C 0.037 3.963 6 H 0.058 0.942 7 C -0.143 4.143 8 C -0.151 4.151 9 C -0.105 4.105 10 N -0.214 5.214 11 C -0.043 4.043 12 C -0.151 4.151 13 C 0.242 3.758 14 O -0.506 6.506 15 N -0.178 5.178 16 C -0.462 4.462 17 H 0.096 0.904 18 C -0.197 4.197 19 N -0.539 5.539 20 Si 0.812 3.188 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.211 1.211 24 C 0.096 3.904 25 C -0.055 4.055 26 N -0.192 5.192 27 C -0.058 4.058 28 C -0.137 4.137 29 N -0.140 5.140 30 N -0.180 5.180 31 C -0.047 4.047 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.147 0.853 47 H 0.151 0.849 48 H 0.105 0.895 49 H 0.128 0.872 50 H 0.085 0.915 51 H 0.111 0.889 52 H 0.112 0.888 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.098 10.069 -11.021 25.036 hybrid contribution 0.555 -2.498 0.323 2.579 sum -19.543 7.571 -10.699 23.531 Atomic orbital electron populations 1.23392 0.75830 1.05461 1.02007 1.86091 1.22831 1.21433 1.93386 1.18980 0.99802 0.86178 0.87508 1.19577 1.13797 0.97048 0.94188 1.20663 0.90666 0.96993 0.87941 0.94179 1.22295 0.96270 1.00218 0.95539 1.22266 0.94639 1.01998 0.96153 1.23264 0.97660 0.99601 0.89935 1.65201 1.07836 1.42016 1.06348 1.21560 0.91329 0.91746 0.99657 1.21401 0.92857 0.98152 1.02702 1.21138 0.83201 0.89061 0.82422 1.90513 1.80696 1.30994 1.48446 1.43747 1.09045 1.14968 1.50017 1.19601 1.01438 1.10066 1.15109 0.90370 1.25899 1.01063 0.98992 0.93758 1.69800 1.32045 1.39100 1.13005 0.85063 0.77444 0.77863 0.78406 1.18641 1.20172 1.21128 1.19084 1.04503 0.87040 0.79731 1.29723 0.89474 0.90699 0.95567 1.80879 1.14060 1.10459 1.13786 1.22383 0.96251 0.96314 0.90838 1.20500 1.00632 0.93929 0.98650 1.77377 1.21886 1.01534 1.13214 1.49070 1.47308 1.14490 1.07084 1.22084 1.04228 1.02059 0.76303 0.92273 0.92146 0.86102 0.90392 0.90478 0.89381 0.90221 0.89320 0.95021 0.96499 0.92831 0.86284 0.89560 0.91629 0.85334 0.84944 0.89536 0.87247 0.91534 0.88945 0.88796 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.13 113.37 1.26 1.64 16 2 O -0.33 -7.72 10.30 -90.89 -0.94 -8.66 16 3 C 0.24 6.41 6.93 83.65 0.58 6.99 16 4 C -0.23 -6.14 4.62 -20.01 -0.09 -6.24 16 5 C 0.15 3.54 2.56 44.32 0.11 3.65 16 6 H 0.04 1.11 7.91 -2.39 -0.02 1.09 16 7 C -0.10 -1.79 6.54 31.49 0.21 -1.59 16 8 C -0.11 -1.78 7.00 31.49 0.22 -1.56 16 9 C 0.02 0.51 5.91 86.44 0.51 1.02 16 10 N -0.49 -12.49 2.64 -860.98 -2.28 -14.77 16 11 C 0.09 2.91 4.06 86.30 0.35 3.26 16 12 C -0.11 -3.78 4.43 29.85 0.13 -3.65 16 13 C 0.45 20.94 7.55 87.66 0.66 21.60 16 14 O -0.62 -34.25 15.68 -3.07 -0.05 -34.30 16 15 N -0.46 -21.60 2.60 -645.43 -1.68 -23.28 16 16 C -0.33 -17.74 9.30 84.04 0.78 -16.96 16 17 H 0.08 4.47 7.40 -2.91 -0.02 4.45 16 18 C 0.00 0.19 5.15 84.92 0.44 0.63 16 19 N -0.90 -44.96 9.01 21.66 0.20 -44.77 16 20 Si 0.99 41.32 29.56 68.60 2.03 43.35 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.22 8.60 4.90 84.57 0.41 9.02 16 25 C 0.26 11.29 12.86 89.45 1.15 12.44 16 26 N -0.51 -23.69 18.54 20.00 0.37 -23.32 16 27 C 0.11 2.81 7.13 43.09 0.31 3.12 16 28 C -0.08 -1.63 10.23 71.24 0.73 -0.90 16 29 N -0.31 -8.82 12.57 -47.41 -0.60 -9.42 16 30 N -0.39 -9.73 4.02 -481.24 -1.93 -11.66 16 31 C 0.09 1.48 11.44 127.77 1.46 2.94 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.29 7.83 -2.39 -0.02 1.27 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.90 7.85 -2.39 -0.02 1.88 16 40 H 0.03 0.79 7.75 -2.39 -0.02 0.77 16 41 H 0.02 0.64 7.73 -2.39 -0.02 0.62 16 42 H 0.05 2.09 7.74 -2.38 -0.02 2.07 16 43 H 0.12 3.36 7.42 -2.39 -0.02 3.34 16 44 H 0.09 2.84 6.77 -2.39 -0.02 2.82 16 45 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 46 H 0.13 5.19 6.34 -2.39 -0.02 5.18 16 47 H 0.13 3.69 6.73 -2.39 -0.02 3.67 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 2.34 5.84 -2.39 -0.01 2.32 16 50 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 53 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -74.39 433.06 5.27 -69.11 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.92 Total: 22.30 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 9.23 Total: 35.42 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -5.92 Total: -127.21 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.98 Total: -42.96 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -74.39 5.27 -69.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253797.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.981 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds