Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35759 * 116.99634 * 2 1 4 4 C 1.35953 * 126.19296 * 270.92797 * 3 2 1 5 5 C 1.50698 * 126.08308 * 0.02562 * 4 3 2 6 6 H 1.09004 * 110.42036 * 347.03277 * 5 4 3 7 7 C 1.54911 * 110.36850 * 109.34110 * 5 4 3 8 8 C 1.55138 * 101.64827 * 155.90320 * 7 5 4 9 9 C 1.54313 * 103.02190 * 324.34531 * 8 7 5 10 10 N 1.47438 * 107.23227 * 22.28432 * 9 8 7 11 11 C 1.46898 * 110.99879 * 123.25837 * 10 9 8 12 12 C 1.53003 * 109.47363 * 69.87565 * 11 10 9 13 13 C 1.50695 * 109.47185 * 179.97438 * 12 11 10 14 14 O 1.21295 * 120.00315 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00074 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00458 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99882 * 38.91521 * 16 15 13 18 18 C 1.38950 * 119.99832 * 218.92802 * 16 15 13 19 19 N 1.31411 * 120.00369 * 25.78729 * 18 16 15 20 20 Si 1.86801 * 119.99754 * 205.78826 * 18 16 15 21 21 H 1.48500 * 109.47323 * 59.99747 * 20 18 16 22 22 H 1.48498 * 109.47095 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46906 * 299.99547 * 20 18 16 24 24 C 1.46509 * 119.99631 * 0.02562 * 15 13 12 25 25 C 1.47203 * 109.46874 * 275.35526 * 24 15 13 26 26 N 9.76491 * 127.84347 * 281.52745 * 2 1 3 27 27 C 1.39825 * 107.83232 * 179.75386 * 4 3 2 28 28 C 1.50705 * 125.85606 * 180.26522 * 27 4 3 29 29 N 1.30829 * 108.28293 * 0.22617 * 27 4 3 30 30 N 1.35137 * 126.19423 * 91.07271 * 3 2 1 31 31 C 1.46498 * 126.03503 * 0.04785 * 30 3 2 32 32 H 1.08997 * 109.47834 * 64.74608 * 1 2 3 33 33 H 1.08997 * 109.47151 * 184.74765 * 1 2 3 34 34 H 1.09005 * 109.47383 * 304.74068 * 1 2 3 35 35 H 1.08999 * 110.99455 * 37.80816 * 7 5 4 36 36 H 1.09009 * 111.02352 * 274.00521 * 7 5 4 37 37 H 1.09006 * 110.70458 * 205.96124 * 8 7 5 38 38 H 1.09000 * 110.86139 * 82.80378 * 8 7 5 39 39 H 1.09002 * 109.89036 * 262.88234 * 9 8 7 40 40 H 1.08996 * 110.02873 * 141.76913 * 9 8 7 41 41 H 1.08998 * 109.47652 * 309.87421 * 11 10 9 42 42 H 1.09007 * 109.47002 * 189.87649 * 11 10 9 43 43 H 1.09007 * 109.46602 * 59.99901 * 12 11 10 44 44 H 1.08998 * 109.46879 * 299.99997 * 12 11 10 45 45 H 0.97005 * 119.99961 * 5.51126 * 19 18 16 46 46 H 1.08994 * 109.46701 * 35.35412 * 24 15 13 47 47 H 1.08994 * 109.46835 * 155.35445 * 24 15 13 48 48 H 1.08998 * 109.46812 * 90.00046 * 28 27 4 49 49 H 1.09001 * 109.46426 * 209.99703 * 28 27 4 50 50 H 1.08998 * 109.47126 * 329.99506 * 28 27 4 51 51 H 1.08996 * 109.47412 * 274.95658 * 31 30 3 52 52 H 1.09005 * 109.47125 * 34.96070 * 31 30 3 53 53 H 1.08998 * 109.46812 * 154.95663 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2097 0.0000 4 6 2.3938 1.9331 -1.0970 5 6 2.1643 1.5351 -2.5323 6 1 1.8843 0.4835 -2.5953 7 6 1.0676 2.4243 -3.1697 8 6 1.4188 2.3225 -4.6773 9 6 2.9609 2.2661 -4.6721 10 7 3.3762 1.7942 -3.3384 11 6 4.2073 0.5875 -3.4423 12 6 5.5649 0.9535 -4.0457 13 6 6.4177 -0.2844 -4.1516 14 8 5.9824 -1.3544 -3.7814 15 7 7.6638 -0.2029 -4.6587 16 6 8.4396 -1.3292 -4.7556 17 1 7.9934 -2.2688 -5.0458 18 6 9.7998 -1.2616 -4.4801 19 7 10.2616 -0.3326 -3.6736 20 14 10.9721 -2.4914 -5.2565 21 1 10.8995 -2.3790 -6.7355 22 1 12.3582 -2.2062 -4.8064 23 1 10.5906 -3.8665 -4.8453 24 6 8.1894 1.0893 -5.1063 25 6 7.7540 1.3435 -6.4893 26 7 7.4198 1.5410 -7.5557 27 6 2.9974 3.1149 -0.6566 28 6 3.5328 4.2142 -1.5375 29 7 3.0169 3.1030 0.6515 30 7 2.4256 1.9115 1.0904 31 6 2.2468 1.5007 2.4852 32 1 -0.3635 0.4384 -0.9294 33 1 -0.3633 -1.0241 0.0851 34 1 -0.3634 0.5856 0.8445 35 1 1.1465 3.4533 -2.8189 36 1 0.0740 2.0217 -2.9721 37 1 1.0671 3.2029 -5.2153 38 1 1.0015 1.4145 -5.1127 39 1 3.3690 3.2598 -4.8574 40 1 3.3117 1.5729 -5.4365 41 1 3.7104 -0.1421 -4.0817 42 1 4.3539 0.1607 -2.4500 43 1 6.0618 1.6830 -3.4061 44 1 5.4183 1.3802 -5.0379 45 1 9.6462 0.2552 -3.2080 46 1 7.8137 1.8792 -4.4561 47 1 9.2784 1.0723 -5.0656 48 1 2.7441 4.9410 -1.7313 49 1 4.3663 4.7071 -1.0372 50 1 3.8754 3.7893 -2.4811 51 1 1.2513 1.7878 2.8238 52 1 2.3593 0.4193 2.5628 53 1 2.9969 1.9895 3.1068 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072253798.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = 34.164272 kcal Electronic energy + Delta-G solvation = -35776.942207 eV Core-core repulsion = 31264.961319 eV Total energy + Delta-G solvation = -4511.980887 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.206 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.56137 -40.92438 -39.80958 -39.07845 -37.91277 -36.64047 -34.92460 -34.26560 -33.58228 -31.88140 -30.49577 -30.20003 -29.26012 -29.09716 -27.58569 -26.56405 -26.06671 -24.34701 -22.46626 -21.94276 -21.69684 -20.72997 -20.36973 -19.95521 -18.69296 -18.50409 -17.90302 -17.34803 -17.22357 -16.88485 -16.61531 -16.31861 -16.05208 -15.61222 -15.59466 -15.39935 -15.04955 -14.89768 -14.81955 -14.52922 -14.49055 -14.29370 -14.02188 -13.97604 -13.67374 -13.55883 -13.51880 -13.24355 -13.06988 -12.95871 -12.89470 -12.84066 -12.58530 -12.54060 -12.42815 -12.24449 -12.09934 -11.97492 -11.92118 -11.88716 -11.78347 -11.45705 -11.09511 -10.95728 -10.46773 -10.03332 -9.92701 -9.30430 -9.27064 -8.75631 -6.18957 0.57854 1.34956 1.47780 1.54344 1.60062 1.64220 1.72803 1.84629 1.91683 2.41183 2.62763 2.75123 2.83466 3.17491 3.26315 3.57202 3.71932 3.82009 3.93773 4.03600 4.07455 4.15445 4.21139 4.24529 4.26608 4.28515 4.31066 4.33704 4.42121 4.52698 4.56762 4.58298 4.59434 4.64154 4.65708 4.79262 4.86268 4.95260 4.97206 4.99662 5.02930 5.08070 5.14092 5.23774 5.26799 5.39519 5.41153 5.81963 5.83527 5.92402 6.05201 6.09061 6.45793 6.46247 6.60026 6.72906 6.84564 7.26360 7.79883 8.51522 Molecular weight = 375.21amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.002600 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.817581 B =10765.891291 C =11795.781274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.328 6.328 3 C 0.243 3.757 4 C -0.231 4.231 5 C 0.156 3.844 6 H 0.042 0.958 7 C -0.107 4.107 8 C -0.134 4.134 9 C 0.034 3.966 10 N -0.513 5.513 11 C 0.092 3.908 12 C -0.116 4.116 13 C 0.461 3.539 14 O -0.609 6.609 15 N -0.464 5.464 16 C -0.429 4.429 17 H 0.051 0.949 18 C -0.011 4.011 19 N -0.877 5.877 20 Si 1.110 2.890 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.280 1.280 24 C 0.189 3.811 25 C 0.222 3.778 26 N -0.469 5.469 27 C 0.107 3.893 28 C -0.076 4.076 29 N -0.314 5.314 30 N -0.389 5.389 31 C 0.094 3.906 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.020 0.980 42 H 0.049 0.951 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.272 0.728 46 H 0.147 0.853 47 H 0.124 0.876 48 H 0.088 0.912 49 H 0.066 0.934 50 H 0.105 0.895 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 11.056 7.804 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.074 3.926 4 C -0.244 4.244 5 C 0.047 3.953 6 H 0.060 0.940 7 C -0.146 4.146 8 C -0.172 4.172 9 C -0.094 4.094 10 N -0.237 5.237 11 C -0.037 4.037 12 C -0.156 4.156 13 C 0.252 3.748 14 O -0.492 6.492 15 N -0.186 5.186 16 C -0.557 4.557 17 H 0.069 0.931 18 C -0.216 4.216 19 N -0.511 5.511 20 Si 0.931 3.069 21 H -0.199 1.199 22 H -0.194 1.194 23 H -0.206 1.206 24 C 0.062 3.938 25 C -0.096 4.096 26 N -0.148 5.148 27 C -0.058 4.058 28 C -0.135 4.135 29 N -0.140 5.140 30 N -0.179 5.179 31 C -0.047 4.047 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.133 0.867 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.164 0.836 47 H 0.141 0.859 48 H 0.106 0.894 49 H 0.085 0.915 50 H 0.124 0.876 51 H 0.110 0.890 52 H 0.110 0.890 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.588 11.106 7.708 22.984 hybrid contribution -2.126 -1.452 -0.125 2.577 sum -20.714 9.654 7.583 24.079 Atomic orbital electron populations 1.23375 0.75839 1.05361 1.02014 1.86087 1.22829 1.21514 1.93404 1.18984 0.99768 0.86321 0.87567 1.19624 1.13455 0.97024 0.94255 1.20551 0.89543 0.97364 0.87861 0.93987 1.22689 0.97108 1.00481 0.94274 1.22755 0.94705 1.03186 0.96582 1.22994 0.95836 1.01601 0.88941 1.63341 1.17608 1.29519 1.13253 1.21569 0.92426 0.90514 0.99197 1.21512 0.95319 0.95367 1.03381 1.21421 0.83826 0.91156 0.78433 1.90523 1.73258 1.32992 1.52472 1.43594 1.13449 1.07330 1.54230 1.20132 0.93415 0.89873 1.52231 0.93102 1.27468 0.97621 1.02030 0.94471 1.70884 1.39225 1.19948 1.21025 0.82961 0.74390 0.73479 0.76037 1.19894 1.19432 1.20615 1.19397 1.03003 0.88222 0.83168 1.30196 0.92122 0.91722 0.95597 1.81002 1.10757 1.10070 1.13001 1.22358 0.96230 0.96414 0.90841 1.20453 1.00815 0.93678 0.98515 1.77377 1.22249 1.01119 1.13257 1.49061 1.47259 1.14535 1.07079 1.22079 1.04368 1.01851 0.76356 0.92249 0.86135 0.92244 0.89571 0.90062 0.88413 0.91895 0.88494 0.93913 0.96163 0.93273 0.86691 0.88853 0.91760 0.83566 0.85884 0.89391 0.91482 0.87644 0.88956 0.89026 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.13 113.37 1.26 1.67 16 2 O -0.33 -7.94 10.35 -90.85 -0.94 -8.88 16 3 C 0.24 6.43 6.94 83.65 0.58 7.01 16 4 C -0.23 -6.07 5.12 -20.01 -0.10 -6.17 16 5 C 0.16 3.74 2.67 44.64 0.12 3.85 16 6 H 0.04 1.17 7.69 -2.38 -0.02 1.15 16 7 C -0.11 -1.80 6.48 31.98 0.21 -1.59 16 8 C -0.13 -2.13 6.94 31.77 0.22 -1.91 16 9 C 0.03 0.69 6.15 86.65 0.53 1.22 16 10 N -0.51 -12.91 2.67 -865.01 -2.31 -15.22 16 11 C 0.09 3.08 3.82 86.30 0.33 3.41 16 12 C -0.12 -3.90 4.33 29.85 0.13 -3.77 16 13 C 0.46 21.44 7.57 87.65 0.66 22.10 16 14 O -0.61 -34.08 15.87 -3.08 -0.05 -34.13 16 15 N -0.46 -21.84 2.24 -645.41 -1.45 -23.29 16 16 C -0.43 -23.31 8.79 84.04 0.74 -22.57 16 17 H 0.05 3.06 7.83 -2.91 -0.02 3.04 16 18 C -0.01 -0.56 4.76 84.93 0.40 -0.15 16 19 N -0.88 -44.99 12.32 21.66 0.27 -44.72 16 20 Si 1.11 46.38 29.99 68.60 2.06 48.43 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.19 6.97 4.73 84.57 0.40 7.37 16 25 C 0.22 8.30 15.08 89.46 1.35 9.65 16 26 N -0.47 -18.52 18.53 19.99 0.37 -18.15 16 27 C 0.11 2.77 7.09 43.09 0.31 3.07 16 28 C -0.08 -1.52 9.86 71.24 0.70 -0.82 16 29 N -0.31 -8.79 12.57 -47.41 -0.60 -9.39 16 30 N -0.39 -9.80 4.02 -481.26 -1.93 -11.73 16 31 C 0.09 1.52 11.42 127.77 1.46 2.97 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.09 1.34 7.60 -2.39 -0.02 1.32 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.02 6.91 -2.39 -0.02 1.00 16 41 H 0.02 0.75 7.92 -2.39 -0.02 0.73 16 42 H 0.05 1.94 8.03 -2.38 -0.02 1.92 16 43 H 0.12 3.38 7.41 -2.38 -0.02 3.36 16 44 H 0.09 2.85 6.54 -2.39 -0.02 2.83 16 45 H 0.27 13.76 7.36 -92.70 -0.68 13.08 16 46 H 0.15 4.08 6.66 -2.39 -0.02 4.07 16 47 H 0.12 4.88 5.80 -2.39 -0.01 4.87 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.11 2.14 5.98 -2.39 -0.01 2.12 16 51 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.09 1.35 8.14 -2.38 -0.02 1.34 16 53 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.21 436.21 5.73 -69.48 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.01 Total: 22.24 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 9.30 Total: 25.35 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.65 Total: -122.49 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.99 Total: -43.01 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.06 Total: 48.43 kcal Total: -75.21 5.73 -69.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253798.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.648 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds