Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47398 * 300.00157 * 3 2 1 6 6 H 1.48503 * 109.46985 * 60.00437 * 3 2 1 7 7 C 1.38657 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99621 * 185.40639 * 9 7 2 11 11 C 1.38876 * 120.07002 * 5.90797 * 10 9 7 12 12 C 1.38100 * 119.93136 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06856 * 0.03086 * 12 11 10 14 14 C 1.50702 * 119.92903 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47032 * 89.99859 * 14 13 12 16 16 O 1.21284 * 119.99944 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00049 * 179.97438 * 15 14 13 18 18 C 1.39923 * 120.00118 * 185.20838 * 17 15 14 19 19 C 1.38908 * 120.06461 * 213.88642 * 18 17 15 20 20 C 1.38092 * 119.95327 * 180.27036 * 19 18 17 21 21 C 1.38281 * 120.08606 * 359.47653 * 20 19 18 22 22 N 1.48020 * 119.93778 * 180.27193 * 21 20 19 23 23 O 1.21804 * 120.00223 * 359.97438 * 22 21 20 24 24 O 1.21798 * 119.99981 * 180.02562 * 22 21 20 25 25 C 1.38382 * 120.12632 * 0.29812 * 21 20 19 26 26 Cl 1.73597 * 119.97743 * 179.97438 * 25 21 20 27 27 C 1.38252 * 120.04539 * 359.95177 * 25 21 20 28 28 C 1.38303 * 120.13751 * 0.24594 * 13 12 11 29 29 C 1.38097 * 120.06721 * 359.44999 * 28 13 12 30 30 H 0.96998 * 119.99755 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03735 * 0.02562 * 11 10 9 32 32 H 1.08008 * 119.96554 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47028 * 329.99930 * 14 13 12 34 34 H 1.09002 * 109.46949 * 209.99741 * 14 13 12 35 35 H 0.96996 * 119.99864 * 5.20958 * 17 15 14 36 36 H 1.08002 * 120.02368 * 0.04589 * 19 18 17 37 37 H 1.08005 * 119.95789 * 179.74657 * 20 19 18 38 38 H 1.07993 * 120.04234 * 180.02562 * 27 25 21 39 39 H 1.07994 * 119.96047 * 179.71051 * 28 13 12 40 40 H 1.08001 * 120.03534 * 180.27533 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5043 0.1129 11 6 3.4366 -3.4284 0.3451 12 6 4.1815 -4.5857 0.4595 13 6 3.5674 -5.8193 0.3424 14 6 4.3833 -7.0802 0.4672 15 6 4.4181 -7.5153 1.9096 16 8 3.8379 -6.8653 2.7532 17 7 5.0939 -8.6268 2.2620 18 6 5.0369 -9.0918 3.5805 19 6 6.1441 -9.7079 4.1497 20 6 6.0834 -10.1709 5.4492 21 6 4.9255 -10.0123 6.1883 22 7 4.8661 -10.5044 7.5830 23 8 5.8364 -11.0490 8.0786 24 8 3.8466 -10.3657 8.2348 25 6 3.8220 -9.3948 5.6263 26 17 2.3701 -9.1982 6.5574 27 6 3.8751 -8.9338 4.3239 28 6 2.2071 -5.8982 0.1055 29 6 1.4558 -4.7446 -0.0037 30 1 -0.4850 0.8400 0.0004 31 1 3.9169 -2.4653 0.4361 32 1 5.2448 -4.5272 0.6396 33 1 5.3991 -6.8915 0.1200 34 1 3.9324 -7.8662 -0.1387 35 1 5.6199 -9.1044 1.6017 36 1 7.0506 -9.8281 3.5750 37 1 6.9429 -10.6537 5.8905 38 1 3.0140 -8.4516 3.8855 39 1 1.7313 -6.8630 0.0099 40 1 0.3928 -4.8069 -0.1843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072275562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -4.994603 kcal Electronic energy + Delta-G solvation = -29617.189049 eV Core-core repulsion = 25006.708573 eV Total energy + Delta-G solvation = -4610.480476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.42757 -41.18532 -39.47715 -38.83237 -37.23391 -36.72531 -36.61269 -35.35488 -32.66930 -32.00369 -31.71468 -30.87063 -30.25856 -27.35669 -26.11840 -25.16240 -24.06700 -22.98933 -22.08428 -21.46421 -20.41925 -19.75716 -18.92313 -18.53982 -18.07528 -17.79095 -17.49073 -17.03578 -16.28563 -15.78216 -15.46439 -15.02205 -14.73901 -14.55616 -14.50954 -14.23586 -14.18899 -14.04723 -13.60158 -13.57348 -12.82788 -12.77025 -12.60515 -12.32727 -12.27742 -12.02764 -11.65068 -11.63051 -11.36971 -11.32231 -11.17285 -11.00408 -10.89866 -10.71722 -10.67693 -10.47032 -10.26113 -9.65778 -9.43840 -9.18055 -8.89504 -8.26389 -7.28390 -6.51458 -4.10106 -0.60991 0.27020 0.91192 1.00861 1.41004 2.02011 2.12331 2.15231 2.51297 2.72604 3.08281 3.09931 3.15418 3.72067 3.91293 4.05516 4.13076 4.23429 4.35279 4.61920 4.74515 4.91440 4.98220 5.00103 5.05936 5.13556 5.19100 5.28515 5.41084 5.44688 5.59244 5.72290 5.89940 6.10553 6.12486 6.30882 6.57363 6.70516 6.81714 6.97418 7.12636 7.24420 7.36126 7.40895 7.65126 7.72868 7.93254 8.94028 9.63062 10.66342 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.001772 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.731786 B =15795.844810 C =16638.812043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.159 3.841 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.183 4.183 14 C -0.074 4.074 15 C 0.507 3.493 16 O -0.485 6.485 17 N -0.681 5.681 18 C 0.226 3.774 19 C -0.151 4.151 20 C -0.019 4.019 21 C -0.070 4.070 22 N 0.033 4.967 23 O -0.171 6.171 24 O -0.141 6.141 25 C 0.040 3.960 26 Cl 0.001 6.999 27 C -0.124 4.124 28 C -0.057 4.057 29 C -0.192 4.192 30 H 0.270 0.730 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.419 0.581 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.109 0.891 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -22.435 3.806 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.184 4.184 14 C -0.113 4.113 15 C 0.296 3.704 16 O -0.355 6.355 17 N -0.327 5.327 18 C 0.128 3.872 19 C -0.173 4.173 20 C -0.039 4.039 21 C -0.156 4.156 22 N 0.551 4.449 23 O -0.382 6.382 24 O -0.361 6.361 25 C 0.011 3.989 26 Cl 0.031 6.969 27 C -0.145 4.145 28 C -0.076 4.076 29 C -0.211 4.211 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.257 0.743 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.127 0.873 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.892 -21.403 3.711 25.260 hybrid contribution 0.683 0.523 0.190 0.881 sum 13.575 -20.880 3.901 25.209 Atomic orbital electron populations 1.70047 1.05981 1.27699 1.45679 1.25320 0.95871 0.98921 0.96449 0.85637 0.79121 0.80290 0.78323 1.19087 1.20075 1.20073 1.21380 0.91823 0.80776 1.52806 0.88979 1.83995 1.34380 1.11557 1.77827 1.19419 0.90374 0.88002 0.91759 1.21116 0.94329 0.98799 1.10943 1.20504 0.98109 0.91747 0.96843 1.18531 0.93890 0.92141 1.13840 1.20411 1.02406 0.98131 0.90394 1.21687 0.77278 0.78526 0.92915 1.90815 1.40851 1.51929 1.51887 1.44047 1.51713 1.28497 1.08464 1.17965 0.92137 0.91389 0.85714 1.21009 0.98254 1.03244 0.94744 1.20791 0.95776 0.94550 0.92788 1.20802 0.98013 1.12032 0.84717 1.43365 1.00383 0.98717 1.02396 1.94527 1.27807 1.43054 1.72833 1.94632 1.20422 1.60165 1.60839 1.20581 0.89024 0.96142 0.93166 1.98488 1.32370 1.94948 1.71104 1.21187 0.99641 1.01852 0.91844 1.20388 0.92656 0.96753 0.97789 1.20159 0.99894 0.90024 1.11021 0.91961 0.85503 0.87805 0.88284 0.88105 0.74333 0.82607 0.81783 0.81371 0.87320 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.79 9.44 30.89 0.29 -10.50 16 8 H 0.09 2.34 5.30 -52.49 -0.28 2.07 16 9 O -0.17 -4.92 9.76 0.03 0.00 -4.92 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.23 -4.91 9.13 -39.40 -0.36 -5.27 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.18 -2.74 4.38 -104.57 -0.46 -3.20 16 14 C -0.07 -0.67 5.83 -29.03 -0.17 -0.84 16 15 C 0.51 5.11 7.56 -10.99 -0.08 5.03 16 16 O -0.48 -7.32 13.74 5.55 0.08 -7.24 16 17 N -0.68 -4.12 5.34 -9.87 -0.05 -4.17 16 18 C 0.23 1.69 6.27 -83.70 -0.53 1.17 16 19 C -0.15 -0.79 9.96 -39.39 -0.39 -1.18 16 20 C -0.02 -0.13 9.55 -39.62 -0.38 -0.51 16 21 C -0.07 -0.71 6.86 -79.88 -0.55 -1.26 16 22 N 0.03 0.40 4.45 34.00 0.15 0.55 16 23 O -0.17 -2.08 18.44 -29.46 -0.54 -2.62 16 24 O -0.14 -1.89 16.01 -29.46 -0.47 -2.36 16 25 C 0.04 0.43 6.32 -39.52 -0.25 0.18 16 26 Cl 0.00 0.01 25.93 -51.86 -1.34 -1.33 16 27 C -0.12 -1.24 8.44 -39.36 -0.33 -1.57 16 28 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 29 C -0.19 -3.91 9.99 -39.40 -0.39 -4.31 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.13 2.71 5.72 -52.49 -0.30 2.41 16 32 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.42 0.78 8.82 -40.82 -0.36 0.42 16 36 H 0.16 0.26 8.06 -52.49 -0.42 -0.17 16 37 H 0.16 0.77 7.60 -52.48 -0.40 0.37 16 38 H 0.17 1.93 6.44 -52.49 -0.34 1.60 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -34.92 374.05 -8.87 -43.79 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.34 Total: 2.07 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -4.72 Total: -20.42 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: 0.86 Total: -27.83 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.94 Total: -17.15 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.34 Total: -1.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.92 -8.87 -43.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072275562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.798 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds