Wall clock time and date at job start Tue Mar 31 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47398 * 300.00157 * 3 2 1 6 6 H 1.48503 * 109.46985 * 60.00437 * 3 2 1 7 7 C 1.38657 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99621 * 185.40639 * 9 7 2 11 11 C 1.38876 * 120.07002 * 5.90797 * 10 9 7 12 12 C 1.38100 * 119.93136 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06856 * 0.03086 * 12 11 10 14 14 C 1.50702 * 119.92903 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47032 * 89.99859 * 14 13 12 16 16 O 1.21284 * 119.99944 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00049 * 179.97438 * 15 14 13 18 18 C 1.39923 * 120.00118 * 185.20838 * 17 15 14 19 19 C 1.38908 * 120.06461 * 213.88642 * 18 17 15 20 20 C 1.38092 * 119.95327 * 180.27036 * 19 18 17 21 21 C 1.38281 * 120.08606 * 359.47653 * 20 19 18 22 22 N 1.48020 * 119.93778 * 180.27193 * 21 20 19 23 23 O 1.21804 * 120.00223 * 359.97438 * 22 21 20 24 24 O 1.21798 * 119.99981 * 180.02562 * 22 21 20 25 25 C 1.38382 * 120.12632 * 0.29812 * 21 20 19 26 26 Cl 1.73597 * 119.97743 * 179.97438 * 25 21 20 27 27 C 1.38252 * 120.04539 * 359.95177 * 25 21 20 28 28 C 1.38303 * 120.13751 * 0.24594 * 13 12 11 29 29 C 1.38097 * 120.06721 * 359.44999 * 28 13 12 30 30 H 0.96998 * 119.99755 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03735 * 0.02562 * 11 10 9 32 32 H 1.08008 * 119.96554 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47028 * 329.99930 * 14 13 12 34 34 H 1.09002 * 109.46949 * 209.99741 * 14 13 12 35 35 H 0.96996 * 119.99864 * 5.20958 * 17 15 14 36 36 H 1.08002 * 120.02368 * 0.04589 * 19 18 17 37 37 H 1.08005 * 119.95789 * 179.74657 * 20 19 18 38 38 H 1.07993 * 120.04234 * 180.02562 * 27 25 21 39 39 H 1.07994 * 119.96047 * 179.71051 * 28 13 12 40 40 H 1.08001 * 120.03534 * 180.27533 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5043 0.1129 11 6 3.4366 -3.4284 0.3451 12 6 4.1815 -4.5857 0.4595 13 6 3.5674 -5.8193 0.3424 14 6 4.3833 -7.0802 0.4672 15 6 4.4181 -7.5153 1.9096 16 8 3.8379 -6.8653 2.7532 17 7 5.0939 -8.6268 2.2620 18 6 5.0369 -9.0918 3.5805 19 6 6.1441 -9.7079 4.1497 20 6 6.0834 -10.1709 5.4492 21 6 4.9255 -10.0123 6.1883 22 7 4.8661 -10.5044 7.5830 23 8 5.8364 -11.0490 8.0786 24 8 3.8466 -10.3657 8.2348 25 6 3.8220 -9.3948 5.6263 26 17 2.3701 -9.1982 6.5574 27 6 3.8751 -8.9338 4.3239 28 6 2.2071 -5.8982 0.1055 29 6 1.4558 -4.7446 -0.0037 30 1 -0.4850 0.8400 0.0004 31 1 3.9169 -2.4653 0.4361 32 1 5.2448 -4.5272 0.6396 33 1 5.3991 -6.8915 0.1200 34 1 3.9324 -7.8662 -0.1387 35 1 5.6199 -9.1044 1.6017 36 1 7.0506 -9.8281 3.5750 37 1 6.9429 -10.6537 5.8905 38 1 3.0140 -8.4516 3.8855 39 1 1.7313 -6.8630 0.0099 40 1 0.3928 -4.8069 -0.1843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072275562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:38 Heat of formation + Delta-G solvation = -27.659683 kcal Electronic energy + Delta-G solvation = -29618.171880 eV Core-core repulsion = 25006.708573 eV Total energy + Delta-G solvation = -4611.463307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.27301 -41.92917 -40.78469 -39.94586 -38.29354 -37.97623 -37.55626 -36.10669 -34.42638 -33.18811 -32.37065 -31.83605 -31.72888 -28.55466 -27.42699 -26.64558 -24.73352 -23.78308 -23.64041 -22.55231 -21.49019 -20.53023 -19.87541 -19.76254 -19.25902 -18.80210 -18.65377 -18.22803 -17.03377 -16.55625 -16.51531 -16.26174 -16.13399 -15.84095 -15.57502 -15.37924 -15.17012 -15.07299 -14.85770 -14.63003 -14.40300 -14.13246 -13.62576 -13.37667 -13.15193 -13.00711 -12.98356 -12.79227 -12.54312 -12.52384 -12.31243 -12.26571 -12.24473 -12.11245 -11.88411 -11.58618 -11.21632 -11.15058 -10.80305 -10.33145 -9.81197 -9.76425 -8.92307 -8.49460 -6.17420 -1.39365 -0.32673 0.09923 0.22070 0.61469 0.62576 0.69787 1.32714 1.39882 1.40983 1.51263 1.77922 2.11495 2.15580 2.81353 3.05802 3.15169 3.46826 3.51002 3.58311 3.66846 3.77075 3.99978 4.05845 4.18126 4.22677 4.40082 4.48444 4.51535 4.59576 4.71303 4.76173 4.81131 4.86249 5.08810 5.12656 5.15590 5.30079 5.38164 5.55936 5.72075 5.75194 6.01381 6.18837 6.29212 6.47374 6.95442 6.99747 7.77366 8.74247 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.001772 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.731786 B =15795.844810 C =16638.812043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.020 2.980 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.247 4.247 12 C -0.057 4.057 13 C -0.150 4.150 14 C -0.072 4.072 15 C 0.513 3.487 16 O -0.544 6.544 17 N -0.653 5.653 18 C 0.227 3.773 19 C -0.120 4.120 20 C -0.011 4.011 21 C -0.085 4.085 22 N 0.033 4.967 23 O -0.160 6.160 24 O -0.191 6.191 25 C 0.023 3.977 26 Cl -0.024 7.024 27 C -0.138 4.138 28 C -0.055 4.055 29 C -0.210 4.210 30 H 0.272 0.728 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.445 0.555 36 H 0.209 0.791 37 H 0.192 0.808 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.191 -25.669 2.276 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.266 4.266 12 C -0.075 4.075 13 C -0.151 4.151 14 C -0.111 4.111 15 C 0.303 3.697 16 O -0.419 6.419 17 N -0.302 5.302 18 C 0.128 3.872 19 C -0.140 4.140 20 C -0.030 4.030 21 C -0.171 4.171 22 N 0.547 4.453 23 O -0.377 6.377 24 O -0.399 6.399 25 C -0.006 4.006 26 Cl 0.005 6.995 27 C -0.160 4.160 28 C -0.073 4.073 29 C -0.229 4.229 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.288 0.712 36 H 0.226 0.774 37 H 0.209 0.791 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.195 -24.725 2.179 30.775 hybrid contribution -0.696 1.053 0.608 1.401 sum 17.500 -23.672 2.787 29.570 Atomic orbital electron populations 1.70195 1.08054 1.28715 1.49031 1.26628 0.96894 1.02854 0.95968 0.84518 0.78269 0.74780 0.78562 1.17346 1.19114 1.19579 1.21838 0.92440 0.81465 1.52962 0.88155 1.83950 1.36046 1.12722 1.81493 1.20013 0.91829 0.87935 0.94110 1.21248 0.93645 1.00170 1.11556 1.20982 0.99848 0.91062 0.95592 1.19233 0.93760 0.94312 1.07840 1.20575 1.04093 0.95888 0.90505 1.21708 0.76543 0.78847 0.92603 1.90850 1.43539 1.54126 1.53399 1.43675 1.50776 1.27256 1.08453 1.18083 0.91852 0.91230 0.86035 1.21496 0.98755 0.99941 0.93844 1.21271 0.95024 0.93621 0.93110 1.21063 0.99266 1.13142 0.83639 1.43680 0.99993 0.98372 1.03272 1.94480 1.27507 1.42316 1.73380 1.94645 1.21015 1.62215 1.62027 1.20663 0.88693 0.97720 0.93547 1.98472 1.33938 1.95222 1.71839 1.21107 1.00530 1.02446 0.91884 1.20917 0.93512 0.96858 0.96009 1.20463 1.00236 0.90594 1.11627 0.91867 0.86799 0.83960 0.83854 0.83810 0.71200 0.77402 0.79057 0.83381 0.83231 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.41 13.67 21.61 0.30 -57.11 16 2 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 3 Si 1.02 43.29 29.55 68.60 2.03 45.32 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.41 -24.22 9.44 67.92 0.64 -23.58 16 8 H 0.10 5.43 5.30 -2.91 -0.02 5.41 16 9 O -0.24 -14.40 9.76 -22.80 -0.22 -14.62 16 10 C 0.11 5.57 6.65 22.58 0.15 5.72 16 11 C -0.25 -10.62 9.13 22.39 0.20 -10.42 16 12 C -0.06 -1.78 9.69 22.25 0.22 -1.57 16 13 C -0.15 -3.87 4.38 -19.83 -0.09 -3.96 16 14 C -0.07 -0.79 5.83 29.10 0.17 -0.62 16 15 C 0.51 7.55 7.56 87.66 0.66 8.22 16 16 O -0.54 -14.92 13.74 -3.04 -0.04 -14.96 16 17 N -0.65 -3.71 5.34 -303.52 -1.62 -5.33 16 18 C 0.23 2.30 6.27 38.15 0.24 2.54 16 19 C -0.12 -0.48 9.96 22.40 0.22 -0.26 16 20 C -0.01 -0.10 9.55 22.25 0.21 0.12 16 21 C -0.09 -1.58 6.86 36.42 0.25 -1.33 16 22 N 0.03 0.79 4.45 -46.35 -0.21 0.58 16 23 O -0.16 -3.66 18.44 18.88 0.35 -3.31 16 24 O -0.19 -5.35 16.01 18.89 0.30 -5.05 16 25 C 0.02 0.48 6.32 22.31 0.14 0.62 16 26 Cl -0.02 -0.60 25.93 -2.72 -0.07 -0.67 16 27 C -0.14 -2.53 8.44 22.41 0.19 -2.35 16 28 C -0.06 -1.68 9.69 22.25 0.22 -1.46 16 29 C -0.21 -8.85 9.99 22.39 0.22 -8.62 16 30 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.11 5.07 5.72 -2.91 -0.02 5.05 16 32 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.14 0.53 8.08 -2.39 -0.02 0.51 16 34 H 0.14 0.56 8.08 -2.39 -0.02 0.54 16 35 H 0.45 -2.02 8.82 -92.71 -0.82 -2.84 16 36 H 0.21 -1.24 8.06 -2.91 -0.02 -1.26 16 37 H 0.19 0.72 7.60 -2.91 -0.02 0.70 16 38 H 0.15 3.36 6.44 -2.91 -0.02 3.35 16 39 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -90.53 374.05 5.26 -85.27 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.33 Total: 7.89 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.12 Total: -37.99 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -1.53 Total: -61.86 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: 0.39 Total: -37.95 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.07 Total: -0.67 kcal Total: -90.53 5.26 -85.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072275562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.614 kcal (2) G-P(sol) polarization free energy of solvation -90.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds