Wall clock time and date at job start Tue Mar 31 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46989 * 2 1 4 4 N 1.29030 * 124.91410 * 90.32994 * 3 2 1 5 5 C 1.31780 * 117.12425 * 180.22579 * 4 3 2 6 6 C 1.50695 * 122.75072 * 179.75152 * 5 4 3 7 7 H 1.09000 * 109.47140 * 144.70651 * 6 5 4 8 8 C 1.52994 * 109.47512 * 264.71390 * 6 5 4 9 9 N 1.46504 * 109.46894 * 24.71335 * 6 5 4 10 10 C 1.34780 * 120.00101 * 155.00175 * 9 6 5 11 11 O 1.21585 * 119.99713 * 359.97438 * 10 9 6 12 12 N 1.34775 * 120.00087 * 179.97438 * 10 9 6 13 13 C 1.46498 * 119.99904 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47300 * 179.97438 * 13 12 10 15 15 C 1.38300 * 119.93634 * 269.73138 * 14 13 12 16 16 C 1.38103 * 120.07235 * 179.72038 * 15 14 13 17 17 C 1.38881 * 119.92859 * 0.56979 * 16 15 14 18 18 O 1.35743 * 120.07033 * 179.67702 * 17 16 15 19 19 C 1.34829 * 117.00323 * 174.48588 * 18 17 16 20 20 H 1.08000 * 119.99772 * 5.06302 * 19 18 17 21 21 C 1.38655 * 120.00285 * 185.06067 * 19 18 17 22 22 N 1.31556 * 119.99986 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47223 * 90.00094 * 23 21 19 25 25 H 1.48499 * 109.47046 * 209.99924 * 23 21 19 26 26 H 1.48492 * 109.47326 * 329.99691 * 23 21 19 27 27 C 1.38884 * 119.86119 * 359.70391 * 17 16 15 28 28 C 1.38100 * 119.93123 * 0.02562 * 27 17 16 29 29 C 1.33641 * 114.49841 * 359.48540 * 5 4 3 30 30 S 1.70976 * 124.91983 * 270.02539 * 3 2 1 31 31 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47283 * 299.99707 * 1 2 3 33 33 H 1.08997 * 109.47064 * 59.99740 * 1 2 3 34 34 H 1.09004 * 109.46862 * 240.00116 * 2 1 3 35 35 H 1.08997 * 109.47064 * 120.00260 * 2 1 3 36 36 H 1.09002 * 109.47349 * 180.02562 * 8 6 5 37 37 H 1.09009 * 109.46896 * 299.99865 * 8 6 5 38 38 H 1.09000 * 109.47521 * 59.99495 * 8 6 5 39 39 H 0.96999 * 120.00481 * 334.99219 * 9 6 5 40 40 H 0.96993 * 120.00031 * 359.97438 * 12 10 9 41 41 H 1.08999 * 109.47244 * 60.00112 * 13 12 10 42 42 H 1.09004 * 109.47345 * 300.00174 * 13 12 10 43 43 H 1.08004 * 119.96372 * 359.97187 * 15 14 13 44 44 H 1.07998 * 120.03412 * 180.26808 * 16 15 14 45 45 H 0.97002 * 119.99992 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.03050 * 179.97438 * 27 17 16 47 47 H 1.08003 * 119.96708 * 180.02562 * 28 27 17 48 48 H 1.08002 * 126.03439 * 180.27278 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2842 2.1151 1.0580 5 6 2.7141 3.3479 0.8795 6 6 3.0411 4.2712 2.0247 7 1 3.8887 4.9006 1.7534 8 6 1.8288 5.1528 2.3313 9 7 3.3807 3.4788 3.2092 10 6 4.1678 4.0043 4.1687 11 8 4.5965 5.1360 4.0510 12 7 4.4798 3.2755 5.2586 13 6 5.3359 3.8466 6.3012 14 6 5.5294 2.8357 7.4019 15 6 4.6524 2.8029 8.4708 16 6 4.8237 1.8739 9.4782 17 6 5.8849 0.9797 9.4231 18 8 6.0598 0.0697 10.4150 19 6 7.0390 -0.8413 10.2443 20 1 7.6949 -0.7752 9.3888 21 6 7.2041 -1.8629 11.1671 22 7 6.4049 -1.9437 12.2090 23 14 8.5612 -3.1245 10.9310 24 1 9.7982 -2.6529 11.6038 25 1 8.1403 -4.4206 11.5210 26 1 8.8241 -3.3032 9.4805 27 6 6.7673 1.0190 8.3512 28 6 6.5873 1.9467 7.3442 29 6 2.8416 3.7104 -0.4005 30 16 2.3580 2.3438 -1.4019 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.0654 5.8209 3.1594 37 1 1.5761 5.7424 1.4499 38 1 0.9811 4.5234 2.6026 39 1 3.0389 2.5758 3.3030 40 1 4.1375 2.3729 5.3526 41 1 4.8647 4.7411 6.7086 42 1 6.3038 4.1085 5.8736 43 1 3.8302 3.5018 8.5156 44 1 4.1359 1.8459 10.3104 45 1 6.5206 -2.6582 12.8548 46 1 7.5937 0.3253 8.3058 47 1 7.2729 1.9774 6.5102 48 1 3.1813 4.6713 -0.7579 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072277857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:33 Heat of formation + Delta-G solvation = -16.689093 kcal Electronic energy + Delta-G solvation = -29875.842857 eV Core-core repulsion = 25636.283828 eV Total energy + Delta-G solvation = -4239.559029 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.52903 -40.91204 -40.47853 -38.55811 -36.69061 -35.55689 -34.66588 -34.27387 -32.35441 -31.82747 -30.93152 -29.68518 -27.66137 -26.77761 -26.14880 -24.81962 -23.64636 -22.55256 -22.11365 -21.77898 -20.73681 -19.89247 -19.51832 -18.98697 -18.71902 -17.12388 -16.74607 -16.58217 -16.37088 -16.21821 -15.95846 -15.77558 -15.65447 -15.48713 -15.36647 -15.15342 -14.97967 -14.63350 -14.39005 -14.31804 -14.04596 -13.94568 -13.65225 -13.34197 -13.19292 -13.15960 -13.02110 -12.63043 -12.56551 -12.55322 -12.36751 -12.23060 -12.19789 -12.11780 -11.97838 -11.36668 -11.20344 -10.80929 -10.65169 -10.40220 -10.36611 -9.85981 -9.80092 -9.63622 -9.02106 -8.48416 -6.16643 -0.28849 0.39498 0.52281 0.57641 0.71953 1.35582 1.43645 1.52695 1.65010 1.88741 2.16987 2.18206 2.79772 2.96083 3.13610 3.45652 3.48330 3.70102 3.88804 4.03493 4.07012 4.17366 4.20654 4.23480 4.32192 4.33723 4.47361 4.48640 4.56781 4.62230 4.70894 4.75393 4.81050 4.87365 4.99583 5.03083 5.04291 5.11140 5.14348 5.22562 5.26563 5.33661 5.46951 5.51939 5.53514 5.68730 5.75828 6.01254 6.02381 6.16197 6.73127 6.96281 7.08839 7.58862 7.75514 8.74334 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.001640 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.377941 B =17073.181921 C =18777.061570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C 0.042 3.958 4 N -0.493 5.493 5 C 0.047 3.953 6 C 0.240 3.760 7 H 0.094 0.906 8 C -0.150 4.150 9 N -0.728 5.728 10 C 0.703 3.297 11 O -0.631 6.631 12 N -0.732 5.732 13 C 0.205 3.795 14 C -0.181 4.181 15 C -0.043 4.043 16 C -0.204 4.204 17 C 0.123 3.877 18 O -0.229 6.229 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.018 2.982 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.244 4.244 28 C -0.045 4.045 29 C -0.256 4.256 30 S 0.166 5.834 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.410 0.590 40 H 0.405 0.595 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.147 0.853 44 H 0.116 0.884 45 H 0.273 0.727 46 H 0.121 0.879 47 H 0.138 0.862 48 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 7.709 -31.216 33.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 C -0.235 4.235 4 N -0.208 5.208 5 C -0.085 4.085 6 C 0.131 3.869 7 H 0.112 0.888 8 C -0.208 4.208 9 N -0.384 5.384 10 C 0.403 3.597 11 O -0.513 6.513 12 N -0.387 5.387 13 C 0.081 3.919 14 C -0.182 4.182 15 C -0.061 4.061 16 C -0.224 4.224 17 C 0.072 3.928 18 O -0.135 6.135 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.837 3.163 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.263 4.263 28 C -0.064 4.064 29 C -0.396 4.396 30 S 0.422 5.578 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.246 0.754 40 H 0.240 0.760 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.165 0.835 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.155 0.845 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.644 8.142 -31.512 34.243 hybrid contribution 0.501 -0.849 1.430 1.737 sum -10.144 7.293 -30.082 32.573 Atomic orbital electron populations 1.21743 0.92826 1.03477 1.02107 1.20382 0.97199 0.86297 1.05247 1.27487 1.02091 1.02696 0.91268 1.65892 1.15874 1.05937 1.33115 1.20218 1.02295 0.91670 0.94365 1.19210 0.98276 0.89253 0.80134 0.88793 1.22107 0.96666 0.99207 1.02862 1.45010 1.53420 1.19442 1.20546 1.16036 0.79107 0.84142 0.80383 1.90875 1.60483 1.19543 1.80414 1.45263 1.54539 1.18652 1.20251 1.19723 0.94185 0.93428 0.84518 1.19496 0.99037 1.01587 0.98125 1.20882 0.97958 0.95715 0.91555 1.20451 0.99318 0.99763 1.02840 1.19984 0.94335 0.90170 0.88302 1.83946 1.51987 1.38467 1.39084 1.21826 1.09518 1.05844 1.11742 0.87946 1.26590 1.01271 0.99636 0.94523 1.70180 1.39137 1.33633 1.12665 0.84591 0.76097 0.75971 0.79606 1.18886 1.19620 1.17612 1.21240 1.02946 1.04774 0.97339 1.20938 0.96537 0.92296 0.96617 1.27045 1.11185 1.05985 0.95359 1.83839 1.58927 1.03901 1.11091 0.89920 0.93423 0.91922 0.87625 0.89059 0.92558 0.89683 0.92507 0.75400 0.75966 0.91038 0.91398 0.83528 0.86624 0.91799 0.86173 0.84451 0.78358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.90 71.98 0.71 -0.44 16 2 C -0.05 -0.47 6.52 29.85 0.19 -0.28 16 3 C 0.04 0.59 6.64 88.52 0.59 1.17 16 4 N -0.49 -8.89 9.51 -179.40 -1.71 -10.60 16 5 C 0.05 0.80 5.80 41.52 0.24 1.04 16 6 C 0.24 4.58 2.91 44.24 0.13 4.71 16 7 H 0.09 1.96 7.57 -2.39 -0.02 1.94 16 8 C -0.15 -2.56 9.47 71.98 0.68 -1.88 16 9 N -0.73 -15.72 5.07 -461.42 -2.34 -18.06 16 10 C 0.70 18.65 8.53 179.05 1.53 20.17 16 11 O -0.63 -20.92 16.01 -3.98 -0.06 -20.98 16 12 N -0.73 -17.66 5.55 -482.31 -2.68 -20.33 16 13 C 0.20 5.29 5.80 85.63 0.50 5.79 16 14 C -0.18 -5.41 5.25 -19.83 -0.10 -5.51 16 15 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 16 C -0.20 -8.35 9.99 22.39 0.22 -8.12 16 17 C 0.12 5.94 6.65 22.58 0.15 6.09 16 18 O -0.23 -13.50 9.76 -22.66 -0.22 -13.72 16 19 C -0.41 -23.62 9.49 67.92 0.64 -22.98 16 20 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 21 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 22 N -0.92 -55.69 13.67 21.61 0.30 -55.39 16 23 Si 1.02 42.21 29.55 68.60 2.03 44.24 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 27 C -0.24 -10.21 9.17 22.39 0.21 -10.01 16 28 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 29 C -0.26 -3.28 11.14 66.78 0.74 -2.53 16 30 S 0.17 1.74 23.18 -56.49 -1.31 0.43 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.41 8.21 7.82 -92.71 -0.73 7.48 16 40 H 0.41 8.77 8.48 -92.71 -0.79 7.99 16 41 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.07 1.78 8.08 -2.38 -0.02 1.76 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 47 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 48 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -74.57 422.31 0.84 -73.73 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.50 Total: 36.66 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 7.33 Total: -15.98 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -6.43 Total: -104.38 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.28 Total: -34.70 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.31 Total: 0.43 kcal Total: -74.57 0.84 -73.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.039 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds