Wall clock time and date at job start Tue Mar 31 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47044 * 2 1 4 4 N 1.29028 * 124.92035 * 89.99865 * 3 2 1 5 5 C 1.31780 * 117.12536 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74730 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47385 * 215.02323 * 6 5 4 8 8 C 1.53007 * 109.46722 * 95.02996 * 6 5 4 9 9 N 1.46492 * 109.47479 * 335.02865 * 6 5 4 10 10 C 1.34777 * 120.00434 * 204.99762 * 9 6 5 11 11 O 1.21591 * 119.99393 * 0.02562 * 10 9 6 12 12 N 1.34768 * 120.00297 * 179.97438 * 10 9 6 13 13 C 1.46503 * 120.00179 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47448 * 180.02562 * 13 12 10 15 15 C 1.38299 * 119.93217 * 269.73027 * 14 13 12 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46896 * 90.00233 * 23 21 19 25 25 H 1.48505 * 109.47024 * 209.99798 * 23 21 19 26 26 H 1.48496 * 109.47185 * 330.00029 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 C 1.33639 * 114.50431 * 0.23561 * 5 4 3 30 30 S 1.70982 * 124.91553 * 269.99983 * 3 2 1 31 31 H 1.08999 * 109.47025 * 59.99802 * 1 2 3 32 32 H 1.08994 * 109.46849 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47216 * 300.00323 * 1 2 3 34 34 H 1.08997 * 109.46952 * 240.00145 * 2 1 3 35 35 H 1.08999 * 109.47025 * 120.00198 * 2 1 3 36 36 H 1.08993 * 109.47707 * 59.99694 * 8 6 5 37 37 H 1.09002 * 109.46996 * 180.02562 * 8 6 5 38 38 H 1.09004 * 109.46831 * 299.99713 * 8 6 5 39 39 H 0.97007 * 119.99685 * 24.99790 * 9 6 5 40 40 H 0.97000 * 120.00448 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.46848 * 59.99850 * 13 12 10 42 42 H 1.09001 * 109.46885 * 300.00464 * 13 12 10 43 43 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 44 44 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 45 45 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 47 47 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 48 48 H 1.07992 * 126.04187 * 179.76723 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7142 3.3479 0.8792 6 6 3.0402 4.2717 2.0244 7 1 2.7766 5.2939 1.7531 8 6 4.5374 4.1954 2.3308 9 7 2.2783 3.8688 3.2090 10 6 1.9964 4.7724 4.1685 11 8 2.3742 5.9221 4.0506 12 7 1.2950 4.4018 5.2579 13 6 0.9881 5.3842 6.3006 14 6 0.2014 4.7198 7.4009 15 6 -1.1803 4.6984 7.3452 16 6 -1.9039 4.0854 8.3490 17 6 -1.2430 3.5003 9.4213 18 8 -1.9518 2.9025 10.4128 19 6 -1.2482 2.2557 11.3638 20 1 -0.1691 2.2985 11.3601 21 6 -1.9101 1.5354 12.3464 22 7 -3.2246 1.4835 12.3512 23 14 -0.9352 0.6386 13.6636 24 1 -0.7191 1.5431 14.8214 25 1 -1.6895 -0.5614 14.1069 26 1 0.3779 0.2213 13.1097 27 6 0.1443 3.5283 9.4772 28 6 0.8624 4.1380 8.4674 29 6 2.8381 3.7117 -0.4007 30 16 2.3586 2.3435 -1.4021 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 5.1044 4.4951 1.4495 37 1 4.7732 4.8632 3.1594 38 1 4.8011 3.1731 2.6021 39 1 1.9766 2.9516 3.3028 40 1 0.9933 3.4848 5.3518 41 1 0.4005 6.1965 5.8728 42 1 1.9168 5.7832 6.7084 43 1 -1.6938 5.1581 6.5136 44 1 -2.9827 4.0652 8.3027 45 1 -3.6876 0.9792 13.0384 46 1 0.6611 3.0746 10.3100 47 1 1.9413 4.1605 8.5106 48 1 3.1740 4.6738 -0.7582 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072277858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:38 Heat of formation + Delta-G solvation = 4.333474 kcal Electronic energy + Delta-G solvation = -29923.389662 eV Core-core repulsion = 25684.742240 eV Total energy + Delta-G solvation = -4238.647422 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.73959 -39.71513 -39.03729 -36.94581 -35.81552 -34.28895 -34.04403 -32.37459 -31.38702 -30.25730 -29.71507 -28.91298 -26.22615 -25.81450 -24.82480 -24.00612 -22.03343 -21.87046 -20.75705 -20.59090 -20.13672 -18.53828 -18.15788 -18.03266 -17.01549 -16.15728 -15.86259 -15.55322 -15.28982 -14.97812 -14.81029 -14.65457 -14.51257 -14.42130 -13.98789 -13.81606 -13.68057 -13.63347 -13.40231 -13.22717 -12.83710 -12.76651 -12.58915 -12.47137 -12.15338 -12.07817 -11.93903 -11.66550 -11.62186 -11.43783 -11.37431 -10.95085 -10.77076 -10.66297 -10.48347 -10.14141 -10.07321 -9.82752 -9.41305 -9.36078 -9.09902 -8.90292 -8.71009 -8.26305 -7.31310 -6.51972 -4.10786 0.27038 0.92057 1.27908 2.05002 2.15192 2.32233 2.90317 3.09571 3.10238 3.14889 3.29439 3.53438 3.91235 4.26311 4.34064 4.58758 4.61037 4.72201 4.73998 4.90878 4.98947 5.03155 5.09193 5.12473 5.18360 5.27131 5.36836 5.38194 5.47719 5.47927 5.63129 5.66997 5.69669 5.77232 5.84875 5.95704 5.99219 6.14121 6.37531 6.41246 6.61079 6.65870 6.82518 6.94803 7.05325 7.18531 7.30163 7.31779 7.36810 7.73544 7.92856 8.12527 8.68442 8.93437 9.61932 10.65580 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.001614 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.146167 B =17339.713107 C =18656.594383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.058 3.942 4 N -0.467 5.467 5 C 0.066 3.934 6 C 0.241 3.759 7 H 0.103 0.897 8 C -0.158 4.158 9 N -0.738 5.738 10 C 0.703 3.297 11 O -0.600 6.600 12 N -0.737 5.737 13 C 0.198 3.802 14 C -0.213 4.213 15 C -0.054 4.054 16 C -0.196 4.196 17 C 0.161 3.839 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.237 4.237 28 C -0.050 4.050 29 C -0.254 4.254 30 S 0.123 5.877 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.405 0.595 40 H 0.398 0.602 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.271 0.729 46 H 0.128 0.872 47 H 0.108 0.892 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -1.069 -27.526 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.221 4.221 4 N -0.182 5.182 5 C -0.066 4.066 6 C 0.132 3.868 7 H 0.121 0.879 8 C -0.217 4.217 9 N -0.395 5.395 10 C 0.403 3.597 11 O -0.479 6.479 12 N -0.392 5.392 13 C 0.076 3.924 14 C -0.215 4.215 15 C -0.072 4.072 16 C -0.215 4.215 17 C 0.106 3.894 18 O -0.077 6.077 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.257 4.257 28 C -0.069 4.069 29 C -0.393 4.393 30 S 0.379 5.621 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.241 0.759 40 H 0.232 0.768 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.146 0.854 47 H 0.126 0.874 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.798 -0.554 -27.988 30.378 hybrid contribution 0.458 -0.723 1.445 1.680 sum 12.256 -1.276 -26.543 29.263 Atomic orbital electron populations 1.21779 0.93177 1.02863 1.02834 1.20265 0.96967 0.87270 1.04447 1.27104 1.02295 1.01833 0.90846 1.65916 1.14902 1.05484 1.31851 1.20343 1.00623 0.91511 0.94154 1.19161 0.91565 0.95802 0.80288 0.87923 1.22195 0.94047 1.02850 1.02619 1.45045 1.60281 1.13393 1.20781 1.15988 0.79012 0.84624 0.80076 1.90894 1.59249 1.18065 1.79717 1.45488 1.58667 1.14398 1.20615 1.19823 0.98191 0.89431 0.84991 1.19232 0.93571 1.10141 0.98513 1.20538 0.92948 0.96819 0.96941 1.20214 0.99659 1.06545 0.95083 1.19437 0.90496 0.91200 0.88281 1.83979 1.34529 1.58885 1.30263 1.21351 0.91616 1.29111 1.04816 0.88932 1.25317 0.96022 0.96898 0.98264 1.70037 1.06870 1.38896 1.33602 0.85698 0.78998 0.78791 0.79879 1.19807 1.20198 1.19141 1.21158 0.93973 1.08446 1.02075 1.20652 0.98395 0.94964 0.92864 1.26720 1.12364 1.04655 0.95558 1.83997 1.60195 1.05303 1.12655 0.92429 0.91159 0.91691 0.89609 0.88514 0.91660 0.90894 0.92186 0.75948 0.76842 0.91773 0.91780 0.86971 0.86408 0.91905 0.85440 0.87374 0.80280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.90 37.16 0.37 -0.42 16 2 C -0.05 -0.27 6.52 -27.88 -0.18 -0.45 16 3 C 0.06 0.45 6.64 -13.46 -0.09 0.36 16 4 N -0.47 -4.51 9.52 -8.06 -0.08 -4.58 16 5 C 0.07 0.62 5.80 -84.23 -0.49 0.13 16 6 C 0.24 2.45 2.91 -69.08 -0.20 2.25 16 7 H 0.10 1.12 7.57 -51.93 -0.39 0.73 16 8 C -0.16 -1.46 9.47 37.16 0.35 -1.11 16 9 N -0.74 -8.48 5.07 -59.82 -0.30 -8.78 16 10 C 0.70 9.97 8.53 -86.93 -0.74 9.23 16 11 O -0.60 -10.42 16.01 5.29 0.08 -10.33 16 12 N -0.74 -9.86 5.55 -66.41 -0.37 -10.23 16 13 C 0.20 2.89 5.80 -5.19 -0.03 2.86 16 14 C -0.21 -3.48 5.25 -104.57 -0.55 -4.03 16 15 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 16 C -0.20 -3.98 9.99 -39.40 -0.39 -4.38 16 17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.17 -4.85 9.76 0.05 0.00 -4.85 16 19 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 23 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 C -0.24 -4.96 9.17 -39.40 -0.36 -5.32 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 29 C -0.25 -1.89 11.14 29.12 0.32 -1.57 16 30 S 0.12 0.79 23.18 -107.50 -2.49 -1.70 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.41 4.33 7.83 -40.82 -0.32 4.01 16 40 H 0.40 4.84 8.48 -40.82 -0.35 4.50 16 41 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 47 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 48 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 422.31 15.07 6.36 6.36 Total: -1.00 -32.46 422.31 -10.56 -43.01 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.68 Total: 10.99 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.82 Total: -10.98 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.01 Total: -47.60 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.46 -10.56 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.346 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds