Wall clock time and date at job start Tue Mar 31 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47044 * 2 1 4 4 N 1.29028 * 124.92035 * 89.99865 * 3 2 1 5 5 C 1.31780 * 117.12536 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74730 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47385 * 215.02323 * 6 5 4 8 8 C 1.53007 * 109.46722 * 95.02996 * 6 5 4 9 9 N 1.46492 * 109.47479 * 335.02865 * 6 5 4 10 10 C 1.34777 * 120.00434 * 204.99762 * 9 6 5 11 11 O 1.21591 * 119.99393 * 0.02562 * 10 9 6 12 12 N 1.34768 * 120.00297 * 179.97438 * 10 9 6 13 13 C 1.46503 * 120.00179 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47448 * 180.02562 * 13 12 10 15 15 C 1.38299 * 119.93217 * 269.73027 * 14 13 12 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46896 * 90.00233 * 23 21 19 25 25 H 1.48505 * 109.47024 * 209.99798 * 23 21 19 26 26 H 1.48496 * 109.47185 * 330.00029 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 C 1.33639 * 114.50431 * 0.23561 * 5 4 3 30 30 S 1.70982 * 124.91553 * 269.99983 * 3 2 1 31 31 H 1.08999 * 109.47025 * 59.99802 * 1 2 3 32 32 H 1.08994 * 109.46849 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47216 * 300.00323 * 1 2 3 34 34 H 1.08997 * 109.46952 * 240.00145 * 2 1 3 35 35 H 1.08999 * 109.47025 * 120.00198 * 2 1 3 36 36 H 1.08993 * 109.47707 * 59.99694 * 8 6 5 37 37 H 1.09002 * 109.46996 * 180.02562 * 8 6 5 38 38 H 1.09004 * 109.46831 * 299.99713 * 8 6 5 39 39 H 0.97007 * 119.99685 * 24.99790 * 9 6 5 40 40 H 0.97000 * 120.00448 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.46848 * 59.99850 * 13 12 10 42 42 H 1.09001 * 109.46885 * 300.00464 * 13 12 10 43 43 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 44 44 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 45 45 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 47 47 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 48 48 H 1.07992 * 126.04187 * 179.76723 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2785 2.1172 1.0580 5 6 2.7142 3.3479 0.8792 6 6 3.0402 4.2717 2.0244 7 1 2.7766 5.2939 1.7531 8 6 4.5374 4.1954 2.3308 9 7 2.2783 3.8688 3.2090 10 6 1.9964 4.7724 4.1685 11 8 2.3742 5.9221 4.0506 12 7 1.2950 4.4018 5.2579 13 6 0.9881 5.3842 6.3006 14 6 0.2014 4.7198 7.4009 15 6 -1.1803 4.6984 7.3452 16 6 -1.9039 4.0854 8.3490 17 6 -1.2430 3.5003 9.4213 18 8 -1.9518 2.9025 10.4128 19 6 -1.2482 2.2557 11.3638 20 1 -0.1691 2.2985 11.3601 21 6 -1.9101 1.5354 12.3464 22 7 -3.2246 1.4835 12.3512 23 14 -0.9352 0.6386 13.6636 24 1 -0.7191 1.5431 14.8214 25 1 -1.6895 -0.5614 14.1069 26 1 0.3779 0.2213 13.1097 27 6 0.1443 3.5283 9.4772 28 6 0.8624 4.1380 8.4674 29 6 2.8381 3.7117 -0.4007 30 16 2.3586 2.3435 -1.4021 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 5.1044 4.4951 1.4495 37 1 4.7732 4.8632 3.1594 38 1 4.8011 3.1731 2.6021 39 1 1.9766 2.9516 3.3028 40 1 0.9933 3.4848 5.3518 41 1 0.4005 6.1965 5.8728 42 1 1.9168 5.7832 6.7084 43 1 -1.6938 5.1581 6.5136 44 1 -2.9827 4.0652 8.3027 45 1 -3.6876 0.9792 13.0384 46 1 0.6611 3.0746 10.3100 47 1 1.9413 4.1605 8.5106 48 1 3.1740 4.6738 -0.7582 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072277858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:36 Heat of formation + Delta-G solvation = -16.688406 kcal Electronic energy + Delta-G solvation = -29924.301240 eV Core-core repulsion = 25684.742240 eV Total energy + Delta-G solvation = -4239.559000 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.52861 -40.91204 -40.47804 -38.55820 -36.69084 -35.55692 -34.66828 -34.27300 -32.35085 -31.82815 -30.92991 -29.69216 -27.66094 -26.78336 -26.14634 -24.80857 -23.64674 -22.56571 -22.11666 -21.77928 -20.73263 -19.89155 -19.51933 -18.97916 -18.72130 -17.13491 -16.71678 -16.52578 -16.32667 -16.27830 -16.00633 -15.90510 -15.58321 -15.47029 -15.40290 -15.16562 -14.87739 -14.49128 -14.40868 -14.36616 -14.20490 -13.90377 -13.65468 -13.40969 -13.18886 -13.03548 -13.01514 -12.68772 -12.56214 -12.55246 -12.36681 -12.23264 -12.19550 -12.11747 -11.98035 -11.36713 -11.20298 -10.80872 -10.64846 -10.40150 -10.36795 -9.86094 -9.80190 -9.63352 -9.02152 -8.48372 -6.16566 -0.28730 0.39684 0.52242 0.57624 0.72073 1.35670 1.43687 1.52767 1.65164 1.88636 2.17026 2.18177 2.79786 2.96204 3.13651 3.45601 3.48276 3.70376 3.88704 4.03582 4.06853 4.17365 4.20739 4.23574 4.32265 4.33245 4.47268 4.48855 4.56768 4.61912 4.70892 4.75290 4.80950 4.87249 4.98954 5.02958 5.04207 5.10824 5.14413 5.22701 5.26551 5.33599 5.46896 5.51938 5.53430 5.68762 5.75801 6.01305 6.02252 6.16144 6.73290 6.96362 7.08706 7.58776 7.75542 8.74386 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.001614 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.146167 B =17339.713107 C =18656.594383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.042 3.958 4 N -0.493 5.493 5 C 0.047 3.953 6 C 0.240 3.760 7 H 0.094 0.906 8 C -0.150 4.150 9 N -0.728 5.728 10 C 0.703 3.297 11 O -0.631 6.631 12 N -0.732 5.732 13 C 0.205 3.795 14 C -0.181 4.181 15 C -0.043 4.043 16 C -0.205 4.205 17 C 0.123 3.877 18 O -0.229 6.229 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.018 2.982 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.252 1.252 27 C -0.244 4.244 28 C -0.045 4.045 29 C -0.256 4.256 30 S 0.166 5.834 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.410 0.590 40 H 0.405 0.595 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.146 0.854 44 H 0.115 0.885 45 H 0.273 0.727 46 H 0.121 0.879 47 H 0.139 0.861 48 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.324 -1.021 -30.233 33.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.235 4.235 4 N -0.208 5.208 5 C -0.085 4.085 6 C 0.131 3.869 7 H 0.112 0.888 8 C -0.209 4.209 9 N -0.384 5.384 10 C 0.403 3.597 11 O -0.513 6.513 12 N -0.387 5.387 13 C 0.081 3.919 14 C -0.182 4.182 15 C -0.062 4.062 16 C -0.224 4.224 17 C 0.072 3.928 18 O -0.135 6.135 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.837 3.163 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.263 4.263 28 C -0.063 4.063 29 C -0.396 4.396 30 S 0.422 5.578 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.246 0.754 40 H 0.240 0.760 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.082 0.918 46 H 0.139 0.861 47 H 0.156 0.844 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 14.109 -0.509 -30.764 33.849 hybrid contribution -0.134 -0.558 1.873 1.959 sum 13.975 -1.067 -28.891 32.111 Atomic orbital electron populations 1.21758 0.93189 1.03460 1.01979 1.20371 0.96859 0.86317 1.05386 1.27491 1.02096 1.02698 0.91260 1.65891 1.15922 1.05880 1.33126 1.20214 1.02310 0.91659 0.94356 1.19209 0.91805 0.95720 0.80139 0.88778 1.22111 0.93740 1.02171 1.02847 1.45009 1.59720 1.13140 1.20543 1.16035 0.78818 0.84432 0.80382 1.90877 1.60542 1.19492 1.80411 1.45264 1.58653 1.14519 1.20268 1.19725 0.98151 0.89460 0.84518 1.19496 0.93428 1.07242 0.98075 1.20873 0.93316 0.95403 0.96575 1.20443 1.00016 1.06715 0.95205 1.19982 0.91851 0.92213 0.88744 1.83948 1.36031 1.61430 1.32078 1.21827 0.92313 1.29499 1.05284 0.87924 1.26588 0.97146 0.97642 1.00635 1.70180 1.08938 1.41189 1.35321 0.84595 0.77771 0.77391 0.76528 1.18893 1.19631 1.17595 1.21242 0.93175 1.08929 1.02938 1.20943 0.99852 0.93678 0.91851 1.27045 1.11242 1.05915 0.95361 1.83842 1.58930 1.03894 1.11094 0.92088 0.89873 0.93663 0.87399 0.88864 0.89658 0.92605 0.92505 0.75408 0.75970 0.91148 0.91293 0.83629 0.86658 0.91802 0.86142 0.84354 0.78363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.90 71.98 0.71 -0.64 16 2 C -0.05 -0.45 6.52 29.85 0.19 -0.25 16 3 C 0.04 0.58 6.64 88.52 0.59 1.17 16 4 N -0.49 -8.86 9.52 -179.40 -1.71 -10.57 16 5 C 0.05 0.80 5.80 41.52 0.24 1.04 16 6 C 0.24 4.58 2.91 44.25 0.13 4.71 16 7 H 0.09 1.96 7.57 -2.39 -0.02 1.94 16 8 C -0.15 -2.57 9.47 71.98 0.68 -1.89 16 9 N -0.73 -15.73 5.07 -461.42 -2.34 -18.06 16 10 C 0.70 18.65 8.53 179.06 1.53 20.18 16 11 O -0.63 -20.92 16.01 -4.00 -0.06 -20.99 16 12 N -0.73 -17.66 5.55 -482.29 -2.68 -20.34 16 13 C 0.20 5.29 5.80 85.63 0.50 5.79 16 14 C -0.18 -5.40 5.25 -19.83 -0.10 -5.51 16 15 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 16 C -0.20 -8.36 9.99 22.39 0.22 -8.14 16 17 C 0.12 5.94 6.65 22.58 0.15 6.09 16 18 O -0.23 -13.49 9.76 -22.74 -0.22 -13.72 16 19 C -0.41 -23.61 9.49 67.92 0.64 -22.96 16 20 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 21 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 22 N -0.92 -55.69 13.67 21.61 0.30 -55.39 16 23 Si 1.02 42.22 29.55 68.60 2.03 44.25 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 27 C -0.24 -10.19 9.17 22.39 0.21 -9.98 16 28 C -0.04 -1.47 9.69 22.25 0.22 -1.25 16 29 C -0.26 -3.26 11.14 66.78 0.74 -2.52 16 30 S 0.17 1.73 23.18 -56.49 -1.31 0.42 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.41 8.21 7.83 -92.70 -0.73 7.49 16 40 H 0.41 8.78 8.48 -92.71 -0.79 7.99 16 41 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 42 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 47 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 48 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -74.56 422.31 0.84 -73.72 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.50 Total: 36.80 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 7.33 Total: -16.11 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -6.43 Total: -104.36 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.29 Total: -34.70 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.31 Total: 0.42 kcal Total: -74.56 0.84 -73.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.034 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds