Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47168 * 2 1 4 4 C 1.53003 * 109.47425 * 119.99883 * 2 1 3 5 5 H 1.08998 * 109.46402 * 54.51157 * 4 2 1 6 6 C 1.50702 * 109.47089 * 174.50767 * 4 2 1 7 7 H 1.08002 * 119.99842 * 114.20778 * 6 4 2 8 8 C 1.37881 * 119.99988 * 294.20587 * 6 4 2 9 9 N 1.31507 * 119.99795 * 159.58334 * 8 6 4 10 10 Si 1.86794 * 120.00097 * 339.58529 * 8 6 4 11 11 H 1.48501 * 109.47257 * 270.00316 * 10 8 6 12 12 H 1.48501 * 109.47564 * 149.99895 * 10 8 6 13 13 H 1.48506 * 109.47237 * 29.99868 * 10 8 6 14 14 O 1.45194 * 109.47246 * 294.51048 * 4 2 1 15 15 C 1.34232 * 117.00195 * 89.99709 * 14 4 2 16 16 O 1.20821 * 119.99725 * 0.02562 * 15 14 4 17 17 C 1.50698 * 120.00076 * 179.97438 * 15 14 4 18 18 H 1.09002 * 110.85850 * 59.29619 * 17 15 14 19 19 C 1.54635 * 110.96997 * 295.51172 * 17 15 14 20 20 C 1.51282 * 104.19284 * 217.08517 * 19 17 15 21 21 O 1.21294 * 124.93801 * 196.21469 * 20 19 17 22 22 N 1.34414 * 110.11645 * 16.24815 * 20 19 17 23 23 C 1.40103 * 124.34830 * 180.41500 * 22 20 19 24 24 C 1.38842 * 120.00069 * 185.75031 * 23 22 20 25 25 C 1.38171 * 120.06825 * 180.02562 * 24 23 22 26 26 C 1.38564 * 120.11915 * 359.97393 * 25 24 23 27 27 C 1.39277 * 119.94111 * 0.02562 * 26 25 24 28 28 C 1.38495 * 119.89829 * 359.74622 * 27 26 25 29 29 O 1.36508 * 108.64300 * 179.97438 * 27 26 25 30 30 C 1.43980 * 105.49723 * 342.70335 * 29 27 26 31 31 O 1.36592 * 131.44515 * 179.97438 * 26 25 24 32 32 C 1.46815 * 111.31849 * 0.37856 * 22 20 19 33 33 H 1.09007 * 109.47300 * 299.99634 * 1 2 3 34 34 H 1.08992 * 109.47273 * 59.99922 * 1 2 3 35 35 H 1.09002 * 109.46733 * 180.02562 * 1 2 3 36 36 H 1.08997 * 109.47275 * 240.00422 * 2 1 3 37 37 H 1.09007 * 109.46711 * 60.00005 * 3 2 1 38 38 H 1.09000 * 109.47484 * 179.97438 * 3 2 1 39 39 H 1.09000 * 109.46865 * 300.00448 * 3 2 1 40 40 H 0.97003 * 120.00648 * 354.93480 * 9 8 6 41 41 H 1.09000 * 110.48528 * 335.76075 * 19 17 15 42 42 H 1.09001 * 110.48364 * 98.27161 * 19 17 15 43 43 H 1.07994 * 119.96772 * 359.97438 * 24 23 22 44 44 H 1.08006 * 119.94289 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.01568 * 180.24688 * 28 27 26 46 46 H 1.09002 * 110.57027 * 268.58616 * 30 29 27 47 47 H 1.09006 * 110.69775 * 145.77557 * 30 29 27 48 48 H 1.09008 * 110.28334 * 224.02716 * 32 22 20 49 49 H 1.09005 * 110.23771 * 102.01724 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5986 -1.7166 1.2997 6 6 3.5409 -0.8400 1.1831 7 1 4.1563 -0.3147 1.8985 8 6 4.1285 -1.6195 0.2093 9 7 5.3877 -1.4259 -0.1169 10 14 3.1360 -2.9504 -0.6468 11 1 3.2676 -4.2255 0.1029 12 1 3.6441 -3.1346 -2.0299 13 1 1.7069 -2.5492 -0.6938 14 8 1.6660 0.0346 2.4312 15 6 0.4830 -0.2591 2.9933 16 8 -0.2165 -1.1197 2.5139 17 6 0.0279 0.4836 4.2230 18 1 -0.0400 1.5537 4.0271 19 6 0.9646 0.1987 5.4200 20 6 0.0356 0.1410 6.6125 21 8 0.3870 0.2151 7.7711 22 7 -1.2358 -0.0051 6.2014 23 6 -2.3401 -0.0836 7.0600 24 6 -3.6013 -0.3539 6.5460 25 6 -4.6914 -0.4311 7.3914 26 6 -4.5295 -0.2396 8.7542 27 6 -3.2656 0.0317 9.2727 28 6 -2.1727 0.1042 8.4251 29 8 -3.3713 0.1784 10.6257 30 6 -4.7710 0.3996 10.8805 31 8 -5.4272 -0.2625 9.7834 32 6 -1.3191 -0.0710 4.7371 33 1 -0.3634 0.5138 0.8901 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8900 37 1 1.6766 1.9564 0.8901 38 1 3.1300 1.4426 0.0005 39 1 1.6766 1.9564 -0.8900 40 1 5.8821 -0.6883 0.2737 41 1 1.4742 -0.7556 5.2868 42 1 1.6896 1.0041 5.5371 43 1 -3.7304 -0.5032 5.4843 44 1 -5.6716 -0.6411 6.9894 45 1 -1.1912 0.3105 8.8255 46 1 -4.9975 1.4658 10.8749 47 1 -5.0653 -0.0484 11.8297 48 1 -2.1429 0.5456 4.3773 49 1 -1.4503 -1.1034 4.4130 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072310787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -145.927605 kcal Electronic energy + Delta-G solvation = -34583.367300 eV Core-core repulsion = 29863.158446 eV Total energy + Delta-G solvation = -4720.208854 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.47802 -41.45422 -39.97586 -38.02854 -37.11398 -36.56108 -36.12968 -34.37257 -33.17581 -32.48036 -30.85087 -29.29048 -28.15129 -27.76156 -26.42567 -26.11085 -24.72889 -23.58139 -22.76906 -22.03229 -20.66423 -20.37018 -19.17363 -18.49044 -18.20749 -17.87492 -17.69029 -17.38905 -17.12351 -16.44674 -16.03669 -15.87690 -15.60777 -15.03409 -14.75052 -14.42496 -14.24861 -14.24369 -13.89473 -13.86664 -13.65609 -13.37448 -13.28613 -13.19904 -13.11966 -12.94954 -12.82606 -12.60678 -12.09313 -11.90998 -11.79289 -11.72299 -11.70133 -11.45834 -11.06037 -10.96116 -10.87974 -10.36099 -10.19849 -10.09193 -10.03343 -9.91186 -9.72883 -9.59881 -9.00630 -8.93476 -8.40368 -7.96473 -6.71509 -4.31283 0.71304 0.88510 2.11078 2.20727 2.51529 2.60784 3.12945 3.13795 3.29099 3.32197 3.34182 3.46574 3.86209 4.05003 4.20497 4.31662 4.31774 4.47100 4.54913 4.62496 4.69440 4.69937 4.93205 4.99547 5.05675 5.19712 5.24740 5.28018 5.38036 5.52037 5.59559 5.68537 5.68977 5.77792 5.78615 5.83207 5.86841 5.91960 6.18632 6.32667 6.33969 6.43196 6.58551 6.61303 6.64896 6.82150 6.83748 7.00903 7.14059 7.22644 7.67269 7.72174 8.15093 8.28131 8.74725 9.33920 10.69371 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.001949 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.581340 B =14361.835212 C =14796.622963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.208 3.792 5 H 0.041 0.959 6 C -0.608 4.608 7 H 0.070 0.930 8 C 0.046 3.954 9 N -0.887 5.887 10 Si 1.027 2.973 11 H -0.281 1.281 12 H -0.280 1.280 13 H -0.270 1.270 14 O -0.333 6.333 15 C 0.463 3.537 16 O -0.510 6.510 17 C -0.098 4.098 18 H 0.129 0.871 19 C -0.138 4.138 20 C 0.522 3.478 21 O -0.503 6.503 22 N -0.557 5.557 23 C 0.185 3.815 24 C -0.148 4.148 25 C -0.069 4.069 26 C 0.000 4.000 27 C 0.063 3.937 28 C -0.142 4.142 29 O -0.306 6.306 30 C 0.213 3.787 31 O -0.310 6.310 32 C 0.109 3.891 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.274 0.726 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.168 0.832 46 H 0.083 0.917 47 H 0.131 0.869 48 H 0.098 0.902 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.992 6.149 13.739 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.182 4.182 4 C 0.154 3.846 5 H 0.058 0.942 6 C -0.645 4.645 7 H 0.088 0.912 8 C -0.161 4.161 9 N -0.519 5.519 10 Si 0.854 3.146 11 H -0.207 1.207 12 H -0.206 1.206 13 H -0.195 1.195 14 O -0.248 6.248 15 C 0.305 3.695 16 O -0.400 6.400 17 C -0.118 4.118 18 H 0.147 0.853 19 C -0.178 4.178 20 C 0.312 3.688 21 O -0.378 6.378 22 N -0.281 5.281 23 C 0.091 3.909 24 C -0.169 4.169 25 C -0.088 4.088 26 C -0.045 4.045 27 C 0.018 3.982 28 C -0.162 4.162 29 O -0.222 6.222 30 C 0.101 3.899 31 O -0.226 6.226 32 C -0.013 4.013 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.185 0.815 46 H 0.101 0.899 47 H 0.148 0.852 48 H 0.116 0.884 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.852 4.619 13.257 24.314 hybrid contribution -0.279 1.233 1.169 1.721 sum -20.132 5.852 14.426 25.448 Atomic orbital electron populations 1.21965 0.96887 1.01383 0.99917 1.21877 0.93584 0.97903 0.99950 1.21552 1.02464 0.95101 0.99096 1.21057 0.96574 0.89779 0.77174 0.94155 1.21805 0.88458 1.35337 1.18905 0.91193 1.25562 0.96903 0.99069 0.94582 1.70812 1.10127 1.31211 1.39710 0.84280 0.76205 0.76839 0.77312 1.20684 1.20571 1.19496 1.86531 1.33347 1.60982 1.43927 1.22623 0.81320 0.81358 0.84208 1.90632 1.55067 1.31481 1.62838 1.21844 0.94967 1.02665 0.92316 0.85337 1.22325 0.97735 1.07504 0.90246 1.21090 0.82615 0.74640 0.90436 1.90647 1.78879 1.48436 1.19830 1.45833 1.05725 1.69008 1.07534 1.17189 0.86504 0.98796 0.88446 1.20578 0.89903 1.05773 1.00619 1.19791 0.99885 1.01334 0.87778 1.19761 0.87344 1.06830 0.90549 1.19449 0.94245 1.01735 0.82763 1.20314 0.99956 1.05897 0.90054 1.87384 1.27241 1.88448 1.19130 1.25612 0.74044 0.98375 0.91828 1.87360 1.38755 1.75943 1.20572 1.22265 0.97454 1.04835 0.76733 0.93958 0.94000 0.92628 0.90612 0.93788 0.91413 0.94810 0.91590 0.86136 0.85736 0.83788 0.84126 0.81486 0.89934 0.85169 0.88354 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.85 37.16 0.29 -2.24 16 2 C -0.11 -2.32 2.18 -90.62 -0.20 -2.52 16 3 C -0.12 -2.35 8.81 37.16 0.33 -2.02 16 4 C 0.21 4.65 1.47 -27.88 -0.04 4.61 16 5 H 0.04 0.96 5.58 -51.93 -0.29 0.67 16 6 C -0.61 -15.78 8.14 -34.44 -0.28 -16.06 16 7 H 0.07 1.97 8.06 -52.49 -0.42 1.55 16 8 C 0.05 1.24 5.25 -17.82 -0.09 1.15 16 9 N -0.89 -25.29 13.69 55.43 0.76 -24.53 16 10 Si 1.03 23.55 26.32 -169.99 -4.47 19.07 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.27 -5.76 5.87 56.52 0.33 -5.42 16 14 O -0.33 -6.47 8.91 -39.26 -0.35 -6.82 16 15 C 0.46 7.35 5.66 36.00 0.20 7.56 16 16 O -0.51 -9.02 12.68 -18.75 -0.24 -9.26 16 17 C -0.10 -1.07 3.65 -90.14 -0.33 -1.40 16 18 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.14 -1.55 6.41 -26.74 -0.17 -1.72 16 20 C 0.52 6.56 7.92 -10.86 -0.09 6.47 16 21 O -0.50 -7.71 14.81 5.55 0.08 -7.63 16 22 N -0.56 -6.14 3.14 -112.20 -0.35 -6.49 16 23 C 0.19 2.07 6.60 -83.64 -0.55 1.52 16 24 C -0.15 -1.33 9.40 -39.38 -0.37 -1.70 16 25 C -0.07 -0.62 10.05 -39.49 -0.40 -1.01 16 26 C 0.00 0.00 7.15 -39.08 -0.28 -0.28 16 27 C 0.06 0.76 7.15 -39.10 -0.28 0.48 16 28 C -0.14 -1.78 9.30 -39.28 -0.37 -2.15 16 29 O -0.31 -3.47 11.40 -45.72 -0.52 -3.99 16 30 C 0.21 1.60 8.89 101.05 0.90 2.50 16 31 O -0.31 -3.14 11.41 -45.99 -0.52 -3.67 16 32 C 0.11 1.04 5.61 -3.10 -0.02 1.02 16 33 H 0.04 0.70 6.05 -51.92 -0.31 0.38 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 1.01 7.82 -51.93 -0.41 0.61 16 36 H 0.08 1.63 5.61 -51.93 -0.29 1.34 16 37 H 0.04 0.77 7.54 -51.92 -0.39 0.38 16 38 H 0.07 1.43 7.40 -51.93 -0.38 1.04 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 41 H 0.12 1.45 7.89 -51.93 -0.41 1.04 16 42 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.14 0.97 7.00 -52.49 -0.37 0.60 16 44 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.17 2.37 5.25 -52.49 -0.28 2.10 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.10 0.70 7.70 -51.92 -0.40 0.30 16 49 H 0.11 1.11 7.01 -51.93 -0.36 0.74 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -31.92 392.49 -7.94 -39.86 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.50 Total: 3.32 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.74 Total: -5.79 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.41 Total: -31.01 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.55 Total: -31.36 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.47 Total: 19.07 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.92 -7.94 -39.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.070 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds