Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47168 * 2 1 4 4 C 1.53003 * 109.47425 * 119.99883 * 2 1 3 5 5 H 1.08998 * 109.46402 * 54.51157 * 4 2 1 6 6 C 1.50702 * 109.47089 * 174.50767 * 4 2 1 7 7 H 1.08002 * 119.99842 * 114.20778 * 6 4 2 8 8 C 1.37881 * 119.99988 * 294.20587 * 6 4 2 9 9 N 1.31507 * 119.99795 * 159.58334 * 8 6 4 10 10 Si 1.86794 * 120.00097 * 339.58529 * 8 6 4 11 11 H 1.48501 * 109.47257 * 270.00316 * 10 8 6 12 12 H 1.48501 * 109.47564 * 149.99895 * 10 8 6 13 13 H 1.48506 * 109.47237 * 29.99868 * 10 8 6 14 14 O 1.45194 * 109.47246 * 294.51048 * 4 2 1 15 15 C 1.34232 * 117.00195 * 89.99709 * 14 4 2 16 16 O 1.20821 * 119.99725 * 0.02562 * 15 14 4 17 17 C 1.50698 * 120.00076 * 179.97438 * 15 14 4 18 18 H 1.09002 * 110.85850 * 59.29619 * 17 15 14 19 19 C 1.54635 * 110.96997 * 295.51172 * 17 15 14 20 20 C 1.51282 * 104.19284 * 217.08517 * 19 17 15 21 21 O 1.21294 * 124.93801 * 196.21469 * 20 19 17 22 22 N 1.34414 * 110.11645 * 16.24815 * 20 19 17 23 23 C 1.40103 * 124.34830 * 180.41500 * 22 20 19 24 24 C 1.38842 * 120.00069 * 185.75031 * 23 22 20 25 25 C 1.38171 * 120.06825 * 180.02562 * 24 23 22 26 26 C 1.38564 * 120.11915 * 359.97393 * 25 24 23 27 27 C 1.39277 * 119.94111 * 0.02562 * 26 25 24 28 28 C 1.38495 * 119.89829 * 359.74622 * 27 26 25 29 29 O 1.36508 * 108.64300 * 179.97438 * 27 26 25 30 30 C 1.43980 * 105.49723 * 342.70335 * 29 27 26 31 31 O 1.36592 * 131.44515 * 179.97438 * 26 25 24 32 32 C 1.46815 * 111.31849 * 0.37856 * 22 20 19 33 33 H 1.09007 * 109.47300 * 299.99634 * 1 2 3 34 34 H 1.08992 * 109.47273 * 59.99922 * 1 2 3 35 35 H 1.09002 * 109.46733 * 180.02562 * 1 2 3 36 36 H 1.08997 * 109.47275 * 240.00422 * 2 1 3 37 37 H 1.09007 * 109.46711 * 60.00005 * 3 2 1 38 38 H 1.09000 * 109.47484 * 179.97438 * 3 2 1 39 39 H 1.09000 * 109.46865 * 300.00448 * 3 2 1 40 40 H 0.97003 * 120.00648 * 354.93480 * 9 8 6 41 41 H 1.09000 * 110.48528 * 335.76075 * 19 17 15 42 42 H 1.09001 * 110.48364 * 98.27161 * 19 17 15 43 43 H 1.07994 * 119.96772 * 359.97438 * 24 23 22 44 44 H 1.08006 * 119.94289 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.01568 * 180.24688 * 28 27 26 46 46 H 1.09002 * 110.57027 * 268.58616 * 30 29 27 47 47 H 1.09006 * 110.69775 * 145.77557 * 30 29 27 48 48 H 1.09008 * 110.28334 * 224.02716 * 32 22 20 49 49 H 1.09005 * 110.23771 * 102.01724 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5986 -1.7166 1.2997 6 6 3.5409 -0.8400 1.1831 7 1 4.1563 -0.3147 1.8985 8 6 4.1285 -1.6195 0.2093 9 7 5.3877 -1.4259 -0.1169 10 14 3.1360 -2.9504 -0.6468 11 1 3.2676 -4.2255 0.1029 12 1 3.6441 -3.1346 -2.0299 13 1 1.7069 -2.5492 -0.6938 14 8 1.6660 0.0346 2.4312 15 6 0.4830 -0.2591 2.9933 16 8 -0.2165 -1.1197 2.5139 17 6 0.0279 0.4836 4.2230 18 1 -0.0400 1.5537 4.0271 19 6 0.9646 0.1987 5.4200 20 6 0.0356 0.1410 6.6125 21 8 0.3870 0.2151 7.7711 22 7 -1.2358 -0.0051 6.2014 23 6 -2.3401 -0.0836 7.0600 24 6 -3.6013 -0.3539 6.5460 25 6 -4.6914 -0.4311 7.3914 26 6 -4.5295 -0.2396 8.7542 27 6 -3.2656 0.0317 9.2727 28 6 -2.1727 0.1042 8.4251 29 8 -3.3713 0.1784 10.6257 30 6 -4.7710 0.3996 10.8805 31 8 -5.4272 -0.2625 9.7834 32 6 -1.3191 -0.0710 4.7371 33 1 -0.3634 0.5138 0.8901 34 1 -0.3633 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8900 37 1 1.6766 1.9564 0.8901 38 1 3.1300 1.4426 0.0005 39 1 1.6766 1.9564 -0.8900 40 1 5.8821 -0.6883 0.2737 41 1 1.4742 -0.7556 5.2868 42 1 1.6896 1.0041 5.5371 43 1 -3.7304 -0.5032 5.4843 44 1 -5.6716 -0.6411 6.9894 45 1 -1.1912 0.3105 8.8255 46 1 -4.9975 1.4658 10.8749 47 1 -5.0653 -0.0484 11.8297 48 1 -2.1429 0.5456 4.3773 49 1 -1.4503 -1.1034 4.4130 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072310787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = -165.100506 kcal Electronic energy + Delta-G solvation = -34584.198699 eV Core-core repulsion = 29863.158446 eV Total energy + Delta-G solvation = -4721.040253 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.22384 -42.42323 -41.29317 -38.86649 -38.40019 -37.32751 -37.31311 -35.94074 -34.45208 -34.04904 -31.63570 -30.19313 -29.49637 -28.99529 -27.88415 -26.76398 -25.81449 -24.39786 -24.08444 -23.35784 -21.88373 -21.31538 -20.65746 -19.61376 -19.36951 -18.95791 -18.74923 -18.38695 -17.97944 -17.75182 -17.18017 -16.86892 -16.51224 -16.25124 -15.77802 -15.52855 -15.21767 -15.14101 -15.05047 -14.86141 -14.81310 -14.73951 -14.63606 -14.41951 -14.16147 -14.03387 -13.86058 -13.73791 -13.59778 -13.11620 -12.81057 -12.78151 -12.70806 -12.60095 -12.51307 -12.45060 -12.18297 -11.95264 -11.81354 -11.53486 -11.33678 -11.33159 -10.90427 -10.81114 -10.71940 -10.45776 -9.82689 -8.84826 -8.75651 -6.43658 -0.09805 0.09568 1.22449 1.24890 1.32838 1.45949 1.47115 1.66136 1.82873 1.95131 2.41381 2.49126 2.52403 2.94815 2.96386 3.15943 3.42747 3.56585 3.73384 3.78521 3.91678 3.98706 4.03396 4.03704 4.13322 4.27462 4.27732 4.30565 4.33003 4.40417 4.48521 4.59229 4.67112 4.69055 4.76798 4.87650 4.93525 4.97136 5.01146 5.05891 5.09755 5.15418 5.17602 5.29295 5.41411 5.50988 5.59955 5.62826 5.78892 5.96509 6.03075 6.05980 6.48313 6.73392 6.92959 7.29746 8.55427 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.001949 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.581340 B =14361.835212 C =14796.622963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C -0.118 4.118 4 C 0.211 3.789 5 H 0.030 0.970 6 C -0.605 4.605 7 H 0.033 0.967 8 C 0.001 3.999 9 N -0.920 5.920 10 Si 1.063 2.937 11 H -0.274 1.274 12 H -0.278 1.278 13 H -0.244 1.244 14 O -0.347 6.347 15 C 0.462 3.538 16 O -0.524 6.524 17 C -0.084 4.084 18 H 0.163 0.837 19 C -0.136 4.136 20 C 0.519 3.481 21 O -0.539 6.539 22 N -0.551 5.551 23 C 0.171 3.829 24 C -0.133 4.133 25 C -0.062 4.062 26 C -0.006 4.006 27 C 0.044 3.956 28 C -0.163 4.163 29 O -0.330 6.330 30 C 0.205 3.795 31 O -0.319 6.319 32 C 0.112 3.888 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.260 0.740 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.176 0.824 44 H 0.172 0.828 45 H 0.143 0.857 46 H 0.105 0.895 47 H 0.161 0.839 48 H 0.136 0.864 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.149 6.670 12.919 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.175 4.175 4 C 0.157 3.843 5 H 0.048 0.952 6 C -0.642 4.642 7 H 0.051 0.949 8 C -0.200 4.200 9 N -0.554 5.554 10 Si 0.884 3.116 11 H -0.200 1.200 12 H -0.203 1.203 13 H -0.167 1.167 14 O -0.262 6.262 15 C 0.305 3.695 16 O -0.414 6.414 17 C -0.104 4.104 18 H 0.180 0.820 19 C -0.176 4.176 20 C 0.310 3.690 21 O -0.417 6.417 22 N -0.274 5.274 23 C 0.076 3.924 24 C -0.153 4.153 25 C -0.081 4.081 26 C -0.051 4.051 27 C -0.001 4.001 28 C -0.184 4.184 29 O -0.246 6.246 30 C 0.094 3.906 31 O -0.236 6.236 32 C -0.009 4.009 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.153 0.847 43 H 0.193 0.807 44 H 0.189 0.811 45 H 0.160 0.840 46 H 0.122 0.878 47 H 0.178 0.822 48 H 0.154 0.846 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.054 5.152 12.450 27.570 hybrid contribution 0.973 1.111 1.590 2.170 sum -23.081 6.262 14.039 27.732 Atomic orbital electron populations 1.21863 0.94085 1.01496 1.01762 1.21822 0.95948 0.98118 0.97846 1.21472 1.00192 0.94787 1.01079 1.20706 0.93936 0.90207 0.79500 0.95238 1.21901 0.90782 1.34068 1.17486 0.94889 1.26758 0.97029 1.00773 0.95411 1.70917 1.11398 1.31676 1.41364 0.83843 0.76477 0.74798 0.76531 1.20007 1.20310 1.16717 1.86501 1.35647 1.60770 1.43288 1.23407 0.79847 0.81275 0.84923 1.90626 1.55105 1.32108 1.63559 1.21897 0.95293 1.03856 0.89310 0.81988 1.22300 0.97886 1.07375 0.90021 1.21263 0.83395 0.74268 0.90092 1.90641 1.79568 1.50222 1.21264 1.45835 1.05192 1.68239 1.08157 1.17350 0.87399 0.99695 0.87910 1.20915 0.88555 1.03729 1.02080 1.20216 1.01253 0.99729 0.86930 1.20051 0.86879 1.06706 0.91493 1.19595 0.94804 1.02602 0.83146 1.20237 0.99245 1.07622 0.91276 1.87343 1.29526 1.88705 1.19073 1.26114 0.72232 0.99956 0.92278 1.87331 1.38931 1.76385 1.20949 1.22411 0.97624 1.05310 0.75530 0.92852 0.91405 0.93376 0.92083 0.92506 0.94856 0.92069 0.93052 0.87344 0.84663 0.80681 0.81066 0.83970 0.87793 0.82166 0.84581 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.85 71.98 0.57 -3.67 16 2 C -0.12 -4.60 2.18 -10.79 -0.02 -4.63 16 3 C -0.12 -4.25 8.81 71.98 0.63 -3.62 16 4 C 0.21 9.32 1.47 29.85 0.04 9.37 16 5 H 0.03 1.38 5.58 -2.39 -0.01 1.37 16 6 C -0.60 -32.32 8.14 25.60 0.21 -32.11 16 7 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 8 C 0.00 0.08 5.25 84.66 0.44 0.52 16 9 N -0.92 -54.40 13.69 21.45 0.29 -54.10 16 10 Si 1.06 47.43 26.32 68.60 1.81 49.23 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.24 -9.75 5.87 99.48 0.58 -9.17 16 14 O -0.35 -13.11 8.91 -51.44 -0.46 -13.57 16 15 C 0.46 13.62 5.66 71.24 0.40 14.02 16 16 O -0.52 -17.15 12.68 21.98 0.28 -16.87 16 17 C -0.08 -1.59 3.65 -10.48 -0.04 -1.63 16 18 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 19 C -0.14 -2.92 6.41 30.59 0.20 -2.72 16 20 C 0.52 12.89 7.92 87.90 0.70 13.59 16 21 O -0.54 -17.22 14.81 -3.07 -0.05 -17.27 16 22 N -0.55 -11.14 3.14 -627.48 -1.97 -13.11 16 23 C 0.17 3.56 6.60 38.10 0.25 3.81 16 24 C -0.13 -1.92 9.40 22.40 0.21 -1.71 16 25 C -0.06 -0.92 10.05 22.33 0.22 -0.69 16 26 C -0.01 -0.13 7.15 22.60 0.16 0.03 16 27 C 0.04 1.05 7.15 22.58 0.16 1.21 16 28 C -0.16 -4.18 9.30 22.47 0.21 -3.97 16 29 O -0.33 -7.53 11.40 -76.15 -0.87 -8.40 16 30 C 0.20 2.80 8.89 113.37 1.01 3.81 16 31 O -0.32 -5.92 11.41 -77.14 -0.88 -6.80 16 32 C 0.11 1.74 5.61 86.82 0.49 2.22 16 33 H 0.05 1.54 6.05 -2.38 -0.01 1.52 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.58 7.82 -2.39 -0.02 1.56 16 36 H 0.06 2.54 5.61 -2.39 -0.01 2.53 16 37 H 0.06 1.86 7.54 -2.38 -0.02 1.85 16 38 H 0.03 1.40 7.40 -2.39 -0.02 1.38 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.26 15.57 8.73 -92.71 -0.81 14.76 16 41 H 0.11 2.62 7.89 -2.39 -0.02 2.60 16 42 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.18 1.42 7.00 -2.91 -0.02 1.40 16 44 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.14 4.35 5.25 -2.91 -0.02 4.34 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.16 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.14 1.16 7.70 -2.38 -0.02 1.14 16 49 H 0.10 1.76 7.01 -2.38 -0.02 1.74 16 Total: -1.00 -74.04 392.49 4.84 -69.20 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.84 Total: 17.87 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.84 Total: -6.18 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.68 Total: -67.22 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -1.97 Total: -62.90 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.81 Total: 49.23 kcal Total: -74.04 4.84 -69.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.902 kcal (2) G-P(sol) polarization free energy of solvation -74.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds