Wall clock time and date at job start Tue Mar 31 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 C 1.52994 * 109.47792 * 120.00009 * 2 1 3 5 5 H 1.08997 * 109.47271 * 304.02657 * 4 2 1 6 6 C 1.50694 * 109.47389 * 184.02102 * 4 2 1 7 7 H 1.08002 * 120.00017 * 4.21343 * 6 4 2 8 8 C 1.37878 * 119.99866 * 184.20500 * 6 4 2 9 9 N 1.31519 * 119.99734 * 174.47779 * 8 6 4 10 10 Si 1.86791 * 120.00294 * 354.48403 * 8 6 4 11 11 H 1.48505 * 109.47377 * 94.70275 * 10 8 6 12 12 H 1.48497 * 109.47388 * 214.70265 * 10 8 6 13 13 H 1.48503 * 109.47219 * 334.70368 * 10 8 6 14 14 O 1.45207 * 109.46896 * 64.02222 * 4 2 1 15 15 C 1.34226 * 117.00002 * 270.00044 * 14 4 2 16 16 O 1.20820 * 119.99953 * 0.02562 * 15 14 4 17 17 C 1.50695 * 119.99868 * 179.97438 * 15 14 4 18 18 H 1.09004 * 110.85695 * 62.33874 * 17 15 14 19 19 C 1.54627 * 110.97282 * 298.55101 * 17 15 14 20 20 C 1.51281 * 104.19828 * 217.04514 * 19 17 15 21 21 O 1.21293 * 124.94543 * 196.26733 * 20 19 17 22 22 N 1.34421 * 110.11539 * 16.25134 * 20 19 17 23 23 C 1.40094 * 124.35208 * 180.40541 * 22 20 19 24 24 C 1.38849 * 120.00447 * 173.87762 * 23 22 20 25 25 C 1.38167 * 120.07103 * 180.02562 * 24 23 22 26 26 C 1.38556 * 120.12255 * 359.97438 * 25 24 23 27 27 C 1.39281 * 119.93710 * 0.02562 * 26 25 24 28 28 C 1.38494 * 119.90139 * 359.97438 * 27 26 25 29 29 O 1.36512 * 108.64528 * 179.97438 * 27 26 25 30 30 C 1.43982 * 105.49573 * 17.30441 * 29 27 26 31 31 O 1.36595 * 131.45168 * 179.97438 * 26 25 24 32 32 C 1.46766 * 111.29876 * 0.67395 * 22 20 19 33 33 H 1.09003 * 109.47089 * 299.99218 * 1 2 3 34 34 H 1.08998 * 109.47878 * 60.00093 * 1 2 3 35 35 H 1.09001 * 109.47031 * 180.02562 * 1 2 3 36 36 H 1.09003 * 109.47089 * 240.00782 * 2 1 3 37 37 H 1.09001 * 109.47393 * 185.27550 * 3 2 1 38 38 H 1.09003 * 109.46938 * 305.27780 * 3 2 1 39 39 H 1.09002 * 109.46581 * 65.27801 * 3 2 1 40 40 H 0.97000 * 120.00215 * 180.02562 * 9 8 6 41 41 H 1.08996 * 110.49075 * 98.36792 * 19 17 15 42 42 H 1.09006 * 110.59922 * 335.77458 * 19 17 15 43 43 H 1.08004 * 119.96428 * 0.02562 * 24 23 22 44 44 H 1.08003 * 119.93974 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.01118 * 179.97438 * 28 27 26 46 46 H 1.09000 * 110.57639 * 214.28570 * 30 29 27 47 47 H 1.09001 * 110.57233 * 91.40668 * 30 29 27 48 48 H 1.08999 * 110.24710 * 101.72257 * 32 22 20 49 49 H 1.09001 * 110.24316 * 223.71584 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6191 -0.2508 2.1377 6 6 3.5438 -0.6354 1.2999 7 1 4.0772 -0.0610 0.5570 8 6 4.2384 -1.2902 2.2947 9 7 5.5534 -1.3061 2.2774 10 14 3.3119 -2.1548 3.6671 11 1 3.1420 -3.5893 3.3225 12 1 4.0794 -2.0374 4.9329 13 1 1.9778 -1.5251 3.8369 14 8 1.6361 -2.1151 1.2021 15 6 0.4530 -2.4257 1.7547 16 8 -0.2229 -1.5614 2.2606 17 6 -0.0328 -3.8522 1.7432 18 1 0.6433 -4.4969 2.3048 19 6 -0.2106 -4.3646 0.2952 20 6 -1.4421 -5.2407 0.3602 21 8 -1.7644 -6.0499 -0.4839 22 7 -2.1271 -4.9922 1.4897 23 6 -3.3125 -5.6435 1.8549 24 6 -3.8784 -5.4086 3.1009 25 6 -5.0471 -6.0506 3.4627 26 6 -5.6582 -6.9300 2.5835 27 6 -5.0929 -7.1678 1.3330 28 6 -3.9214 -6.5238 0.9712 29 8 -5.8760 -8.0630 0.6630 30 6 -7.1405 -8.0586 1.3516 31 8 -6.7960 -7.6773 2.6967 32 6 -1.4770 -3.9464 2.2883 33 1 -0.3633 0.5137 0.8901 34 1 -0.3635 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8901 37 1 3.1258 1.4441 -0.0945 38 1 1.6014 1.9829 -0.8390 39 1 1.7557 1.9283 0.9335 40 1 6.0421 -1.7671 2.9771 41 1 0.6570 -4.9484 -0.0122 42 1 -0.3708 -3.5316 -0.3895 43 1 -3.4044 -4.7232 3.7880 44 1 -5.4857 -5.8659 4.4322 45 1 -3.4813 -6.7071 0.0021 46 1 -7.5874 -9.0527 1.3382 47 1 -7.8162 -7.3278 0.9071 48 1 -1.9949 -2.9961 2.1586 49 1 -1.4640 -4.2291 3.3410 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072310788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:50 Heat of formation + Delta-G solvation = -142.024407 kcal Electronic energy + Delta-G solvation = -34943.020034 eV Core-core repulsion = 30222.980435 eV Total energy + Delta-G solvation = -4720.039599 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.45453 -41.41098 -39.89198 -38.00085 -37.01764 -36.53934 -36.04059 -34.36461 -33.14076 -32.60399 -30.82874 -29.26198 -28.07855 -28.01551 -26.44392 -26.08467 -24.64398 -23.55416 -22.97301 -22.35280 -20.51334 -20.08586 -19.22193 -18.47127 -18.20408 -17.81329 -17.54527 -17.29459 -17.10758 -16.32517 -16.12585 -15.79840 -15.53654 -15.06242 -14.73360 -14.47333 -14.26505 -14.21581 -14.00334 -13.85865 -13.78535 -13.48745 -13.25492 -13.16222 -13.04647 -13.00986 -12.60370 -12.39367 -11.89270 -11.81430 -11.75712 -11.72494 -11.64695 -11.42644 -11.34895 -11.23624 -10.69854 -10.66505 -10.33920 -10.12105 -10.03756 -9.87935 -9.76151 -9.41491 -9.11615 -8.98248 -8.82435 -7.93859 -6.39289 -4.45597 0.73649 0.90845 2.12423 2.26646 2.59682 2.64273 3.11776 3.15958 3.16254 3.24785 3.32042 3.34403 3.92190 4.09415 4.21072 4.22713 4.34138 4.51893 4.57420 4.65710 4.70854 4.72919 4.93486 5.01561 5.11315 5.23812 5.27779 5.40675 5.45240 5.55770 5.58557 5.63206 5.66625 5.70714 5.80036 5.86501 5.89242 5.94256 6.17080 6.32592 6.36261 6.42346 6.45218 6.55051 6.67740 6.67933 6.84310 6.93087 6.95336 7.31435 7.48562 7.70524 8.17109 8.41648 8.65831 9.21512 10.69811 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.002214 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.117089 B =12642.312189 C =13082.644745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.130 4.130 4 C 0.185 3.815 5 H 0.050 0.950 6 C -0.513 4.513 7 H 0.094 0.906 8 C 0.088 3.912 9 N -0.873 5.873 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.259 1.259 14 O -0.346 6.346 15 C 0.458 3.542 16 O -0.511 6.511 17 C -0.108 4.108 18 H 0.128 0.872 19 C -0.137 4.137 20 C 0.522 3.478 21 O -0.504 6.504 22 N -0.557 5.557 23 C 0.186 3.814 24 C -0.149 4.149 25 C -0.068 4.068 26 C 0.000 4.000 27 C 0.063 3.937 28 C -0.142 4.142 29 O -0.306 6.306 30 C 0.213 3.787 31 O -0.310 6.310 32 C 0.109 3.891 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.270 0.730 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.168 0.832 46 H 0.131 0.869 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.379 -8.728 0.502 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.187 4.187 4 C 0.134 3.866 5 H 0.068 0.932 6 C -0.549 4.549 7 H 0.111 0.889 8 C -0.119 4.119 9 N -0.509 5.509 10 Si 0.703 3.297 11 H -0.198 1.198 12 H -0.217 1.217 13 H -0.184 1.184 14 O -0.263 6.263 15 C 0.300 3.700 16 O -0.402 6.402 17 C -0.128 4.128 18 H 0.146 0.854 19 C -0.177 4.177 20 C 0.312 3.688 21 O -0.379 6.379 22 N -0.281 5.281 23 C 0.091 3.909 24 C -0.169 4.169 25 C -0.088 4.088 26 C -0.045 4.045 27 C 0.018 3.982 28 C -0.162 4.162 29 O -0.222 6.222 30 C 0.101 3.899 31 O -0.226 6.226 32 C -0.012 4.012 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.185 0.815 46 H 0.148 0.852 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.602 -9.110 0.235 22.528 hybrid contribution -0.513 -0.602 0.837 1.151 sum -21.115 -9.712 1.072 23.266 Atomic orbital electron populations 1.21935 0.96477 1.00590 1.00933 1.21379 0.94044 0.96997 0.99498 1.21676 1.02127 0.94731 1.00215 1.21312 0.95733 0.74546 0.95018 0.93206 1.21129 0.87799 1.32144 1.13833 0.88861 1.25074 0.94724 0.94421 0.97729 1.69912 1.06378 1.40972 1.33606 0.86818 0.80945 0.80694 0.81277 1.19802 1.21672 1.18356 1.86935 1.32458 1.37239 1.69639 1.22686 0.81636 0.89650 0.76001 1.90600 1.56551 1.49926 1.43086 1.22042 0.97108 0.95226 0.98458 0.85443 1.22307 0.97649 1.01084 0.96614 1.21108 0.84994 0.82534 0.80135 1.90640 1.71288 1.34917 1.41046 1.45841 1.22151 1.37531 1.22580 1.17196 0.86304 0.94091 0.93289 1.20588 0.96908 1.03981 0.95467 1.19784 0.95162 0.94346 0.99462 1.19752 0.90576 0.98350 0.95843 1.19446 0.95129 0.92710 0.90908 1.20316 0.94811 0.98181 1.02914 1.87383 1.24291 1.57442 1.53105 1.25624 0.86033 1.02976 0.75228 1.87365 1.40574 1.66224 1.28477 1.22288 0.91255 0.91521 0.96150 0.92345 0.93898 0.94099 0.91294 0.91328 0.94193 0.93152 0.92001 0.85686 0.86292 0.83807 0.84134 0.81481 0.85187 0.89903 0.87631 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.83 37.16 0.29 -2.06 16 2 C -0.10 -1.89 2.72 -90.62 -0.25 -2.13 16 3 C -0.13 -2.27 8.77 37.16 0.33 -1.94 16 4 C 0.19 4.07 1.17 -27.89 -0.03 4.04 16 5 H 0.05 1.17 6.26 -51.93 -0.33 0.85 16 6 C -0.51 -13.14 8.77 -34.44 -0.30 -13.45 16 7 H 0.09 2.53 6.55 -52.49 -0.34 2.18 16 8 C 0.09 2.33 5.46 -17.82 -0.10 2.24 16 9 N -0.87 -24.59 13.96 55.43 0.77 -23.81 16 10 Si 0.88 20.31 25.48 -169.99 -4.33 15.98 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -5.95 6.04 56.52 0.34 -5.61 16 14 O -0.35 -7.11 7.85 -39.25 -0.31 -7.42 16 15 C 0.46 8.00 4.18 36.00 0.15 8.15 16 16 O -0.51 -9.59 12.67 -18.75 -0.24 -9.82 16 17 C -0.11 -1.41 3.67 -90.05 -0.33 -1.74 16 18 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 19 C -0.14 -1.64 6.39 -26.74 -0.17 -1.81 16 20 C 0.52 6.90 7.92 -10.86 -0.09 6.81 16 21 O -0.50 -7.90 14.82 5.55 0.08 -7.82 16 22 N -0.56 -6.64 3.14 -112.13 -0.35 -6.99 16 23 C 0.19 2.21 6.60 -83.65 -0.55 1.65 16 24 C -0.15 -1.44 9.42 -39.38 -0.37 -1.81 16 25 C -0.07 -0.65 10.05 -39.49 -0.40 -1.05 16 26 C 0.00 0.00 7.15 -39.08 -0.28 -0.28 16 27 C 0.06 0.79 7.15 -39.10 -0.28 0.51 16 28 C -0.14 -1.85 9.30 -39.28 -0.37 -2.22 16 29 O -0.31 -3.56 11.40 -45.73 -0.52 -4.08 16 30 C 0.21 1.67 8.89 101.05 0.90 2.57 16 31 O -0.31 -3.24 11.41 -46.00 -0.52 -3.77 16 32 C 0.11 1.21 5.83 -3.02 -0.02 1.19 16 33 H 0.06 1.00 7.74 -51.93 -0.40 0.60 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.66 6.07 -51.93 -0.32 0.35 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.28 6.51 -51.93 -0.34 0.95 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 41 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.12 1.40 7.90 -51.93 -0.41 0.99 16 43 H 0.14 1.08 6.73 -52.48 -0.35 0.72 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.17 2.45 5.25 -52.49 -0.28 2.17 16 46 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 1.20 7.08 -51.93 -0.37 0.84 16 49 H 0.10 0.87 7.21 -51.93 -0.37 0.49 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -31.40 391.03 -7.89 -39.30 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.51 Total: 3.88 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.86 Total: -1.34 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.42 Total: -30.80 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.51 Total: -32.91 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.33 Total: 15.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.40 -7.89 -39.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.727 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds