Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46878 * 2 1 4 4 C 1.52994 * 109.47792 * 120.00009 * 2 1 3 5 5 H 1.08997 * 109.47271 * 304.02657 * 4 2 1 6 6 C 1.50694 * 109.47389 * 184.02102 * 4 2 1 7 7 H 1.08002 * 120.00017 * 4.21343 * 6 4 2 8 8 C 1.37878 * 119.99866 * 184.20500 * 6 4 2 9 9 N 1.31519 * 119.99734 * 174.47779 * 8 6 4 10 10 Si 1.86791 * 120.00294 * 354.48403 * 8 6 4 11 11 H 1.48505 * 109.47377 * 94.70275 * 10 8 6 12 12 H 1.48497 * 109.47388 * 214.70265 * 10 8 6 13 13 H 1.48503 * 109.47219 * 334.70368 * 10 8 6 14 14 O 1.45207 * 109.46896 * 64.02222 * 4 2 1 15 15 C 1.34226 * 117.00002 * 270.00044 * 14 4 2 16 16 O 1.20820 * 119.99953 * 0.02562 * 15 14 4 17 17 C 1.50695 * 119.99868 * 179.97438 * 15 14 4 18 18 H 1.09004 * 110.85695 * 62.33874 * 17 15 14 19 19 C 1.54627 * 110.97282 * 298.55101 * 17 15 14 20 20 C 1.51281 * 104.19828 * 217.04514 * 19 17 15 21 21 O 1.21293 * 124.94543 * 196.26733 * 20 19 17 22 22 N 1.34421 * 110.11539 * 16.25134 * 20 19 17 23 23 C 1.40094 * 124.35208 * 180.40541 * 22 20 19 24 24 C 1.38849 * 120.00447 * 173.87762 * 23 22 20 25 25 C 1.38167 * 120.07103 * 180.02562 * 24 23 22 26 26 C 1.38556 * 120.12255 * 359.97438 * 25 24 23 27 27 C 1.39281 * 119.93710 * 0.02562 * 26 25 24 28 28 C 1.38494 * 119.90139 * 359.97438 * 27 26 25 29 29 O 1.36512 * 108.64528 * 179.97438 * 27 26 25 30 30 C 1.43982 * 105.49573 * 17.30441 * 29 27 26 31 31 O 1.36595 * 131.45168 * 179.97438 * 26 25 24 32 32 C 1.46766 * 111.29876 * 0.67395 * 22 20 19 33 33 H 1.09003 * 109.47089 * 299.99218 * 1 2 3 34 34 H 1.08998 * 109.47878 * 60.00093 * 1 2 3 35 35 H 1.09001 * 109.47031 * 180.02562 * 1 2 3 36 36 H 1.09003 * 109.47089 * 240.00782 * 2 1 3 37 37 H 1.09001 * 109.47393 * 185.27550 * 3 2 1 38 38 H 1.09003 * 109.46938 * 305.27780 * 3 2 1 39 39 H 1.09002 * 109.46581 * 65.27801 * 3 2 1 40 40 H 0.97000 * 120.00215 * 180.02562 * 9 8 6 41 41 H 1.08996 * 110.49075 * 98.36792 * 19 17 15 42 42 H 1.09006 * 110.59922 * 335.77458 * 19 17 15 43 43 H 1.08004 * 119.96428 * 0.02562 * 24 23 22 44 44 H 1.08003 * 119.93974 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.01118 * 179.97438 * 28 27 26 46 46 H 1.09000 * 110.57639 * 214.28570 * 30 29 27 47 47 H 1.09001 * 110.57233 * 91.40668 * 30 29 27 48 48 H 1.08999 * 110.24710 * 101.72257 * 32 22 20 49 49 H 1.09001 * 110.24316 * 223.71584 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6191 -0.2508 2.1377 6 6 3.5438 -0.6354 1.2999 7 1 4.0772 -0.0610 0.5570 8 6 4.2384 -1.2902 2.2947 9 7 5.5534 -1.3061 2.2774 10 14 3.3119 -2.1548 3.6671 11 1 3.1420 -3.5893 3.3225 12 1 4.0794 -2.0374 4.9329 13 1 1.9778 -1.5251 3.8369 14 8 1.6361 -2.1151 1.2021 15 6 0.4530 -2.4257 1.7547 16 8 -0.2229 -1.5614 2.2606 17 6 -0.0328 -3.8522 1.7432 18 1 0.6433 -4.4969 2.3048 19 6 -0.2106 -4.3646 0.2952 20 6 -1.4421 -5.2407 0.3602 21 8 -1.7644 -6.0499 -0.4839 22 7 -2.1271 -4.9922 1.4897 23 6 -3.3125 -5.6435 1.8549 24 6 -3.8784 -5.4086 3.1009 25 6 -5.0471 -6.0506 3.4627 26 6 -5.6582 -6.9300 2.5835 27 6 -5.0929 -7.1678 1.3330 28 6 -3.9214 -6.5238 0.9712 29 8 -5.8760 -8.0630 0.6630 30 6 -7.1405 -8.0586 1.3516 31 8 -6.7960 -7.6773 2.6967 32 6 -1.4770 -3.9464 2.2883 33 1 -0.3633 0.5137 0.8901 34 1 -0.3635 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8901 37 1 3.1258 1.4441 -0.0945 38 1 1.6014 1.9829 -0.8390 39 1 1.7557 1.9283 0.9335 40 1 6.0421 -1.7671 2.9771 41 1 0.6570 -4.9484 -0.0122 42 1 -0.3708 -3.5316 -0.3895 43 1 -3.4044 -4.7232 3.7880 44 1 -5.4857 -5.8659 4.4322 45 1 -3.4813 -6.7071 0.0021 46 1 -7.5874 -9.0527 1.3382 47 1 -7.8162 -7.3278 0.9071 48 1 -1.9949 -2.9961 2.1586 49 1 -1.4640 -4.2291 3.3410 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072310788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -160.425539 kcal Electronic energy + Delta-G solvation = -34943.817967 eV Core-core repulsion = 30222.980435 eV Total energy + Delta-G solvation = -4720.837532 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.23058 -42.44161 -41.28690 -38.87339 -38.32483 -37.31697 -37.30992 -35.89419 -34.55408 -34.08872 -31.65001 -30.24126 -29.66850 -29.02112 -27.83855 -26.76633 -25.83073 -24.52567 -24.38031 -23.39064 -21.54060 -21.23338 -20.80817 -19.42329 -19.25095 -19.00657 -18.82343 -18.40196 -18.01373 -17.65298 -17.39634 -16.77955 -16.49912 -16.40461 -16.07663 -15.55006 -15.33135 -15.17419 -15.06501 -14.93308 -14.78443 -14.70302 -14.57761 -14.23906 -14.03944 -13.89062 -13.83371 -13.76025 -13.33749 -13.22278 -13.10359 -12.79413 -12.74367 -12.66695 -12.56447 -12.43715 -12.28362 -12.19843 -11.87192 -11.66011 -11.41977 -11.17715 -10.94854 -10.81137 -10.77400 -10.73709 -9.83797 -8.76911 -8.40723 -6.50738 -0.10857 0.08484 1.17352 1.24881 1.27597 1.31852 1.36285 1.43984 1.80694 1.94064 2.29246 2.48484 2.51317 2.89525 3.02435 3.17197 3.41343 3.54012 3.73289 3.77923 3.90228 3.96714 4.02903 4.03987 4.09592 4.18013 4.24619 4.28972 4.37831 4.38885 4.47854 4.57463 4.66401 4.71636 4.74305 4.85722 4.91602 4.91939 4.99703 5.02730 5.08436 5.12305 5.15731 5.23300 5.34814 5.48743 5.50693 5.59302 5.76922 5.91274 6.05029 6.21017 6.59164 6.72639 6.92926 7.20377 8.72136 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.002214 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.117089 B =12642.312189 C =13082.644745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C -0.126 4.126 4 C 0.193 3.807 5 H 0.036 0.964 6 C -0.520 4.520 7 H 0.064 0.936 8 C 0.036 3.964 9 N -0.922 5.922 10 Si 0.927 3.073 11 H -0.251 1.251 12 H -0.292 1.292 13 H -0.255 1.255 14 O -0.359 6.359 15 C 0.456 3.544 16 O -0.521 6.521 17 C -0.102 4.102 18 H 0.146 0.854 19 C -0.132 4.132 20 C 0.521 3.479 21 O -0.536 6.536 22 N -0.552 5.552 23 C 0.171 3.829 24 C -0.135 4.135 25 C -0.062 4.062 26 C -0.006 4.006 27 C 0.045 3.955 28 C -0.162 4.162 29 O -0.328 6.328 30 C 0.205 3.795 31 O -0.319 6.319 32 C 0.114 3.886 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.271 0.729 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.174 0.826 44 H 0.171 0.829 45 H 0.144 0.856 46 H 0.162 0.838 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.241 -9.278 2.047 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 C -0.184 4.184 4 C 0.141 3.859 5 H 0.054 0.946 6 C -0.556 4.556 7 H 0.082 0.918 8 C -0.166 4.166 9 N -0.560 5.560 10 Si 0.752 3.248 11 H -0.175 1.175 12 H -0.219 1.219 13 H -0.179 1.179 14 O -0.276 6.276 15 C 0.299 3.701 16 O -0.411 6.411 17 C -0.122 4.122 18 H 0.163 0.837 19 C -0.172 4.172 20 C 0.311 3.689 21 O -0.413 6.413 22 N -0.275 5.275 23 C 0.077 3.923 24 C -0.156 4.156 25 C -0.081 4.081 26 C -0.051 4.051 27 C 0.000 4.000 28 C -0.182 4.182 29 O -0.245 6.245 30 C 0.094 3.906 31 O -0.236 6.236 32 C -0.007 4.007 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.191 0.809 44 H 0.189 0.811 45 H 0.162 0.838 46 H 0.179 0.821 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.502 -9.661 1.789 25.473 hybrid contribution 0.245 -0.413 0.298 0.565 sum -23.258 -10.074 2.087 25.432 Atomic orbital electron populations 1.21833 0.94270 1.00961 1.01883 1.21374 0.95830 0.97152 0.97644 1.21629 1.00846 0.94443 1.01455 1.20959 0.93469 0.75459 0.96041 0.94592 1.21294 0.89896 1.31497 1.12949 0.91769 1.25829 0.95323 0.95442 1.00039 1.70028 1.07932 1.43146 1.34883 0.86003 0.79674 0.80802 0.78356 1.17550 1.21928 1.17919 1.86805 1.34548 1.35695 1.70552 1.23336 0.80356 0.91421 0.74997 1.90599 1.56439 1.50849 1.43252 1.22058 0.98673 0.91979 0.99484 0.83665 1.22303 0.97581 1.01038 0.96237 1.21254 0.85282 0.82198 0.80161 1.90639 1.72106 1.36349 1.42252 1.45824 1.22103 1.37414 1.22175 1.17352 0.86491 0.94375 0.94128 1.20913 0.96481 1.03528 0.94631 1.20193 0.94673 0.93055 1.00199 1.20033 0.90805 0.98637 0.95624 1.19584 0.95354 0.93233 0.91849 1.20232 0.95687 0.99687 1.02635 1.87345 1.25676 1.57467 1.54022 1.26131 0.84893 1.05513 0.74047 1.87339 1.40232 1.66139 1.29846 1.22377 0.89527 0.91386 0.97415 0.92953 0.91333 0.94019 0.91691 0.93560 0.91097 0.93316 0.91961 0.84764 0.86076 0.80900 0.81126 0.83808 0.82060 0.87880 0.87624 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.83 71.98 0.56 -3.51 16 2 C -0.10 -3.72 2.72 -10.79 -0.03 -3.75 16 3 C -0.13 -4.34 8.77 71.98 0.63 -3.71 16 4 C 0.19 8.41 1.17 29.84 0.04 8.45 16 5 H 0.04 1.68 6.26 -2.39 -0.01 1.67 16 6 C -0.52 -27.29 8.77 25.60 0.22 -27.07 16 7 H 0.06 3.66 6.55 -2.91 -0.02 3.64 16 8 C 0.04 1.93 5.46 84.65 0.46 2.39 16 9 N -0.92 -53.51 13.96 21.45 0.30 -53.22 16 10 Si 0.93 41.38 25.48 68.60 1.75 43.13 16 11 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.26 -11.06 6.04 99.48 0.60 -10.46 16 14 O -0.36 -14.24 7.85 -51.38 -0.40 -14.65 16 15 C 0.46 14.78 4.18 71.23 0.30 15.08 16 16 O -0.52 -18.16 12.67 21.98 0.28 -17.88 16 17 C -0.10 -2.35 3.67 -10.42 -0.04 -2.39 16 18 H 0.15 2.91 8.14 -2.38 -0.02 2.89 16 19 C -0.13 -2.93 6.39 30.59 0.20 -2.73 16 20 C 0.52 13.19 7.92 87.90 0.70 13.89 16 21 O -0.54 -17.00 14.82 -3.07 -0.05 -17.04 16 22 N -0.55 -11.95 3.14 -627.27 -1.97 -13.92 16 23 C 0.17 3.74 6.60 38.10 0.25 3.99 16 24 C -0.14 -2.14 9.42 22.40 0.21 -1.93 16 25 C -0.06 -0.98 10.05 22.33 0.22 -0.75 16 26 C -0.01 -0.12 7.15 22.60 0.16 0.04 16 27 C 0.04 1.10 7.15 22.58 0.16 1.26 16 28 C -0.16 -4.23 9.30 22.47 0.21 -4.02 16 29 O -0.33 -7.55 11.40 -76.19 -0.87 -8.42 16 30 C 0.20 2.87 8.89 113.37 1.01 3.88 16 31 O -0.32 -6.04 11.41 -77.17 -0.88 -6.92 16 32 C 0.11 2.10 5.83 86.89 0.51 2.60 16 33 H 0.05 1.68 7.74 -2.39 -0.02 1.66 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.26 6.07 -2.39 -0.01 1.24 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.77 6.51 -2.39 -0.02 1.76 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.12 2.66 7.90 -2.38 -0.02 2.64 16 43 H 0.17 1.68 6.73 -2.91 -0.02 1.66 16 44 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.14 4.42 5.25 -2.91 -0.02 4.41 16 46 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.11 2.02 7.08 -2.39 -0.02 2.01 16 49 H 0.13 1.62 7.21 -2.39 -0.02 1.60 16 Total: -1.00 -71.16 391.03 4.82 -66.33 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.89 Total: 20.86 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.77 Total: 1.71 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -1.67 Total: -67.13 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -1.92 Total: -64.91 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.75 Total: 43.13 kcal Total: -71.16 4.82 -66.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.092 kcal (2) G-P(sol) polarization free energy of solvation -71.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds