Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 C 1.52994 * 109.47331 * 239.99705 * 2 1 3 5 5 H 1.09000 * 109.47424 * 55.37681 * 4 2 1 6 6 C 1.50705 * 109.47450 * 175.37081 * 4 2 1 7 7 H 1.08003 * 119.99399 * 34.99231 * 6 4 2 8 8 C 1.37871 * 120.00462 * 214.99326 * 6 4 2 9 9 N 1.31513 * 119.99902 * 354.94214 * 8 6 4 10 10 Si 1.86798 * 120.00105 * 174.94790 * 8 6 4 11 11 H 1.48498 * 109.47233 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47331 * 119.99973 * 10 8 6 13 13 H 1.48508 * 109.46888 * 239.99945 * 10 8 6 14 14 O 1.45203 * 109.47305 * 295.37345 * 4 2 1 15 15 C 1.34231 * 117.00121 * 89.99953 * 14 4 2 16 16 O 1.20836 * 119.99572 * 0.02562 * 15 14 4 17 17 C 1.50690 * 120.00113 * 180.02562 * 15 14 4 18 18 H 1.08997 * 110.85969 * 303.78846 * 17 15 14 19 19 C 1.54625 * 110.96970 * 67.62327 * 17 15 14 20 20 C 1.51282 * 104.19651 * 142.91700 * 19 17 15 21 21 O 1.21301 * 124.94035 * 163.74861 * 20 19 17 22 22 N 1.34419 * 110.11778 * 343.74264 * 20 19 17 23 23 C 1.40101 * 124.35094 * 179.61558 * 22 20 19 24 24 C 1.38836 * 120.00063 * 185.49378 * 23 22 20 25 25 C 1.38176 * 120.07042 * 179.71934 * 24 23 22 26 26 C 1.38557 * 120.11440 * 0.54942 * 25 24 23 27 27 C 1.39284 * 119.94495 * 359.72617 * 26 25 24 28 28 C 1.38493 * 119.89329 * 359.97438 * 27 26 25 29 29 O 1.36512 * 108.64351 * 179.97438 * 27 26 25 30 30 C 1.43979 * 105.49401 * 342.70348 * 29 27 26 31 31 O 1.36589 * 131.44132 * 179.72347 * 26 25 24 32 32 C 1.46762 * 111.29655 * 359.59852 * 22 20 19 33 33 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47162 * 300.00404 * 1 2 3 35 35 H 1.09007 * 109.47144 * 59.99983 * 1 2 3 36 36 H 1.08996 * 109.46868 * 119.99558 * 2 1 3 37 37 H 1.08993 * 109.47546 * 304.83184 * 3 2 1 38 38 H 1.09002 * 109.47177 * 64.83898 * 3 2 1 39 39 H 1.09008 * 109.47064 * 184.83786 * 3 2 1 40 40 H 0.97003 * 120.00178 * 180.02562 * 9 8 6 41 41 H 1.08998 * 110.48530 * 261.59082 * 19 17 15 42 42 H 1.08994 * 110.48867 * 24.23456 * 19 17 15 43 43 H 1.08009 * 119.96654 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.94349 * 180.29729 * 25 24 23 45 45 H 1.07997 * 120.01000 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.56930 * 268.58532 * 30 29 27 47 47 H 1.09004 * 110.56679 * 145.72086 * 30 29 27 48 48 H 1.09007 * 110.24384 * 258.01319 * 32 22 20 49 49 H 1.09005 * 110.24818 * 136.01760 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6107 -0.2576 -2.1373 6 6 3.5427 -0.6228 -1.3078 7 1 4.1211 -0.6424 -0.3960 8 6 4.1790 -0.5076 -2.5255 9 7 3.4849 -0.5836 -3.6399 10 14 6.0271 -0.2438 -2.5923 11 1 6.5703 -0.1941 -1.2112 12 1 6.6605 -1.3636 -3.3339 13 1 6.3195 1.0369 -3.2851 14 8 1.6483 -2.1184 -1.1952 15 6 0.4651 -2.4411 -1.7408 16 8 -0.2204 -1.5845 -2.2471 17 6 -0.0083 -3.8716 -1.7218 18 1 0.7237 -4.5289 -2.1911 19 6 -0.3219 -4.3317 -0.2793 20 6 -1.5350 -5.2229 -0.4296 21 8 -1.9319 -6.0035 0.4099 22 7 -2.1092 -5.0241 -1.6286 23 6 -3.2492 -5.7011 -2.0812 24 6 -3.7009 -5.5087 -3.3799 25 6 -4.8217 -6.1801 -3.8296 26 6 -5.5045 -7.0383 -2.9828 27 6 -5.0570 -7.2289 -1.6776 28 6 -3.9299 -6.5602 -1.2298 29 8 -5.8922 -8.1107 -1.0544 30 6 -7.0864 -8.1431 -1.8580 31 8 -6.6203 -7.8017 -3.1770 32 6 -1.3886 -4.0063 -2.4024 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3634 0.5139 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 1.6077 1.9807 -0.8435 38 1 1.7491 1.9307 0.9302 39 1 3.1266 1.4437 -0.0867 40 1 3.9326 -0.5029 -4.4967 41 1 0.5161 -4.8942 0.1323 42 1 -0.5542 -3.4744 0.3525 43 1 -3.1733 -4.8367 -4.0406 44 1 -5.1685 -6.0326 -4.8417 45 1 -3.5811 -6.7069 -0.2183 46 1 -7.8068 -7.4061 -1.5033 47 1 -7.5243 -9.1414 -1.8531 48 1 -1.9219 -3.0563 -2.3649 49 1 -1.2695 -4.3322 -3.4357 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072310789.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = -152.213410 kcal Electronic energy + Delta-G solvation = -34568.177938 eV Core-core repulsion = 29847.696511 eV Total energy + Delta-G solvation = -4720.481427 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.39198 -41.27270 -39.48614 -37.91989 -36.81730 -36.48301 -35.77556 -34.08134 -33.00482 -32.62009 -30.75372 -29.14125 -27.94868 -27.50051 -26.22056 -26.02213 -24.54322 -23.48372 -23.13260 -22.25973 -20.40281 -19.82891 -19.04108 -18.36547 -18.12894 -17.67828 -17.41358 -17.11438 -16.75530 -16.11730 -15.95515 -15.56022 -15.28852 -14.93496 -14.66414 -14.56297 -14.20261 -14.12334 -13.83581 -13.76998 -13.61320 -13.48956 -13.19736 -13.02879 -12.93169 -12.78077 -12.63525 -11.98171 -11.74932 -11.63920 -11.63220 -11.52928 -11.45086 -11.24948 -11.14431 -11.11601 -10.82532 -10.40769 -10.25075 -10.07277 -9.97469 -9.91724 -9.53681 -9.16792 -8.91044 -8.87250 -8.69746 -7.85892 -6.37643 -4.48799 0.80875 0.97853 2.21102 2.35983 2.70226 2.99193 3.11131 3.21868 3.22123 3.25782 3.42079 3.53478 4.07992 4.17785 4.27024 4.29784 4.39613 4.59674 4.71086 4.75407 4.80347 4.86029 5.00786 5.10256 5.23381 5.31455 5.40266 5.51819 5.61469 5.69451 5.76856 5.80280 5.83661 5.87488 5.89061 5.96675 6.01402 6.13583 6.30892 6.44559 6.53264 6.61678 6.66863 6.77676 6.90390 6.91037 6.95705 7.17073 7.25621 7.56121 7.77688 7.79749 8.05916 8.68303 8.83646 9.21778 10.68901 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.001947 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.784693 B =14374.621864 C =14767.355495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.127 4.127 4 C 0.202 3.798 5 H 0.076 0.924 6 C -0.508 4.508 7 H 0.067 0.933 8 C 0.073 3.927 9 N -0.866 5.866 10 Si 0.903 3.097 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.280 1.280 14 O -0.350 6.350 15 C 0.464 3.536 16 O -0.517 6.517 17 C -0.103 4.103 18 H 0.126 0.874 19 C -0.136 4.136 20 C 0.522 3.478 21 O -0.508 6.508 22 N -0.556 5.556 23 C 0.186 3.814 24 C -0.148 4.148 25 C -0.068 4.068 26 C -0.002 4.002 27 C 0.062 3.938 28 C -0.142 4.142 29 O -0.307 6.307 30 C 0.213 3.787 31 O -0.310 6.310 32 C 0.107 3.893 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.269 0.731 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.168 0.832 46 H 0.083 0.917 47 H 0.130 0.870 48 H 0.106 0.894 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.079 -9.707 1.076 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.184 4.184 4 C 0.152 3.848 5 H 0.094 0.906 6 C -0.544 4.544 7 H 0.085 0.915 8 C -0.134 4.134 9 N -0.502 5.502 10 Si 0.729 3.271 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.205 1.205 14 O -0.265 6.265 15 C 0.306 3.694 16 O -0.408 6.408 17 C -0.123 4.123 18 H 0.143 0.857 19 C -0.176 4.176 20 C 0.312 3.688 21 O -0.383 6.383 22 N -0.279 5.279 23 C 0.092 3.908 24 C -0.169 4.169 25 C -0.087 4.087 26 C -0.046 4.046 27 C 0.017 3.983 28 C -0.163 4.163 29 O -0.223 6.223 30 C 0.101 3.899 31 O -0.227 6.227 32 C -0.014 4.014 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.185 0.815 46 H 0.100 0.900 47 H 0.148 0.852 48 H 0.124 0.876 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.506 -10.006 1.229 18.495 hybrid contribution 0.687 0.009 -0.302 0.750 sum -14.819 -9.998 0.927 17.900 Atomic orbital electron populations 1.21921 0.96763 1.00442 1.00608 1.21468 0.93866 0.97086 0.99873 1.21636 1.02649 0.94899 0.99249 1.20972 0.94599 0.74576 0.94689 0.90597 1.21111 0.90266 1.49977 0.93050 0.91467 1.25227 0.99339 0.93265 0.95601 1.69978 1.36416 1.45958 0.97851 0.86364 0.83977 0.78074 0.78684 1.19165 1.20582 1.20525 1.86905 1.32387 1.37516 1.69739 1.22508 0.81726 0.89133 0.76004 1.90588 1.56281 1.50645 1.43276 1.21933 0.97397 0.96001 0.96934 0.85654 1.22284 0.97297 1.00888 0.97142 1.21137 0.84864 0.82372 0.80422 1.90630 1.66799 1.36793 1.44092 1.45860 1.25620 1.38535 1.17933 1.17208 0.87141 0.93798 0.92675 1.20607 0.98153 1.03756 0.94352 1.19790 0.94888 0.94367 0.99695 1.19749 0.91935 0.98316 0.94641 1.19445 0.95049 0.93084 0.90709 1.20319 0.94842 0.98153 1.02985 1.87377 1.26802 1.58758 1.49351 1.25611 0.87263 1.03267 0.73716 1.87359 1.40647 1.65964 1.28713 1.22298 0.91162 0.92062 0.95883 0.94179 0.94395 0.92373 0.92346 0.93519 0.94707 0.91071 0.92161 0.85972 0.86630 0.83709 0.84151 0.81509 0.89951 0.85240 0.87603 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.84 37.16 0.29 -2.24 16 2 C -0.10 -2.08 2.74 -90.63 -0.25 -2.33 16 3 C -0.13 -2.37 8.98 37.16 0.33 -2.04 16 4 C 0.20 4.76 1.93 -27.88 -0.05 4.70 16 5 H 0.08 2.04 6.39 -51.93 -0.33 1.70 16 6 C -0.51 -12.77 7.13 -34.44 -0.25 -13.02 16 7 H 0.07 1.66 7.82 -52.48 -0.41 1.25 16 8 C 0.07 1.85 5.45 -17.82 -0.10 1.76 16 9 N -0.87 -23.29 12.84 55.43 0.71 -22.57 16 10 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 O -0.35 -7.64 9.80 -39.26 -0.38 -8.03 16 15 C 0.46 8.65 5.63 36.00 0.20 8.85 16 16 O -0.52 -10.64 12.65 -18.76 -0.24 -10.88 16 17 C -0.10 -1.38 3.66 -90.14 -0.33 -1.71 16 18 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 19 C -0.14 -1.68 6.41 -26.74 -0.17 -1.85 16 20 C 0.52 7.12 7.92 -10.86 -0.09 7.03 16 21 O -0.51 -8.14 14.81 5.54 0.08 -8.06 16 22 N -0.56 -6.93 3.14 -112.24 -0.35 -7.28 16 23 C 0.19 2.32 6.60 -83.65 -0.55 1.77 16 24 C -0.15 -1.52 9.41 -39.38 -0.37 -1.89 16 25 C -0.07 -0.68 10.05 -39.49 -0.40 -1.08 16 26 C 0.00 -0.02 7.15 -39.08 -0.28 -0.30 16 27 C 0.06 0.80 7.15 -39.10 -0.28 0.52 16 28 C -0.14 -1.93 9.30 -39.28 -0.37 -2.29 16 29 O -0.31 -3.68 11.40 -45.73 -0.52 -4.20 16 30 C 0.21 1.75 8.89 101.05 0.90 2.65 16 31 O -0.31 -3.37 11.41 -45.98 -0.52 -3.90 16 32 C 0.11 1.27 5.86 -3.12 -0.02 1.25 16 33 H 0.04 0.71 6.06 -51.93 -0.31 0.39 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.12 7.78 -51.93 -0.40 0.71 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.40 6.90 -51.92 -0.36 1.04 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.12 1.43 7.89 -51.93 -0.41 1.02 16 43 H 0.15 1.19 6.74 -52.48 -0.35 0.84 16 44 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.17 2.51 5.25 -52.49 -0.28 2.24 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.11 1.34 6.96 -51.93 -0.36 0.98 16 49 H 0.10 0.95 7.24 -51.93 -0.38 0.57 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -30.98 399.55 -8.53 -39.51 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.54 Total: 5.10 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.77 Total: -0.22 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.36 Total: -29.86 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.59 Total: -35.07 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.98 -8.53 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310789.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.705 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds