Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 C 1.52994 * 109.47331 * 239.99705 * 2 1 3 5 5 H 1.09000 * 109.47424 * 55.37681 * 4 2 1 6 6 C 1.50705 * 109.47450 * 175.37081 * 4 2 1 7 7 H 1.08003 * 119.99399 * 34.99231 * 6 4 2 8 8 C 1.37871 * 120.00462 * 214.99326 * 6 4 2 9 9 N 1.31513 * 119.99902 * 354.94214 * 8 6 4 10 10 Si 1.86798 * 120.00105 * 174.94790 * 8 6 4 11 11 H 1.48498 * 109.47233 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47331 * 119.99973 * 10 8 6 13 13 H 1.48508 * 109.46888 * 239.99945 * 10 8 6 14 14 O 1.45203 * 109.47305 * 295.37345 * 4 2 1 15 15 C 1.34231 * 117.00121 * 89.99953 * 14 4 2 16 16 O 1.20836 * 119.99572 * 0.02562 * 15 14 4 17 17 C 1.50690 * 120.00113 * 180.02562 * 15 14 4 18 18 H 1.08997 * 110.85969 * 303.78846 * 17 15 14 19 19 C 1.54625 * 110.96970 * 67.62327 * 17 15 14 20 20 C 1.51282 * 104.19651 * 142.91700 * 19 17 15 21 21 O 1.21301 * 124.94035 * 163.74861 * 20 19 17 22 22 N 1.34419 * 110.11778 * 343.74264 * 20 19 17 23 23 C 1.40101 * 124.35094 * 179.61558 * 22 20 19 24 24 C 1.38836 * 120.00063 * 185.49378 * 23 22 20 25 25 C 1.38176 * 120.07042 * 179.71934 * 24 23 22 26 26 C 1.38557 * 120.11440 * 0.54942 * 25 24 23 27 27 C 1.39284 * 119.94495 * 359.72617 * 26 25 24 28 28 C 1.38493 * 119.89329 * 359.97438 * 27 26 25 29 29 O 1.36512 * 108.64351 * 179.97438 * 27 26 25 30 30 C 1.43979 * 105.49401 * 342.70348 * 29 27 26 31 31 O 1.36589 * 131.44132 * 179.72347 * 26 25 24 32 32 C 1.46762 * 111.29655 * 359.59852 * 22 20 19 33 33 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47162 * 300.00404 * 1 2 3 35 35 H 1.09007 * 109.47144 * 59.99983 * 1 2 3 36 36 H 1.08996 * 109.46868 * 119.99558 * 2 1 3 37 37 H 1.08993 * 109.47546 * 304.83184 * 3 2 1 38 38 H 1.09002 * 109.47177 * 64.83898 * 3 2 1 39 39 H 1.09008 * 109.47064 * 184.83786 * 3 2 1 40 40 H 0.97003 * 120.00178 * 180.02562 * 9 8 6 41 41 H 1.08998 * 110.48530 * 261.59082 * 19 17 15 42 42 H 1.08994 * 110.48867 * 24.23456 * 19 17 15 43 43 H 1.08009 * 119.96654 * 359.97438 * 24 23 22 44 44 H 1.08002 * 119.94349 * 180.29729 * 25 24 23 45 45 H 1.07997 * 120.01000 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.56930 * 268.58532 * 30 29 27 47 47 H 1.09004 * 110.56679 * 145.72086 * 30 29 27 48 48 H 1.09007 * 110.24384 * 258.01319 * 32 22 20 49 49 H 1.09005 * 110.24818 * 136.01760 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6107 -0.2576 -2.1373 6 6 3.5427 -0.6228 -1.3078 7 1 4.1211 -0.6424 -0.3960 8 6 4.1790 -0.5076 -2.5255 9 7 3.4849 -0.5836 -3.6399 10 14 6.0271 -0.2438 -2.5923 11 1 6.5703 -0.1941 -1.2112 12 1 6.6605 -1.3636 -3.3339 13 1 6.3195 1.0369 -3.2851 14 8 1.6483 -2.1184 -1.1952 15 6 0.4651 -2.4411 -1.7408 16 8 -0.2204 -1.5845 -2.2471 17 6 -0.0083 -3.8716 -1.7218 18 1 0.7237 -4.5289 -2.1911 19 6 -0.3219 -4.3317 -0.2793 20 6 -1.5350 -5.2229 -0.4296 21 8 -1.9319 -6.0035 0.4099 22 7 -2.1092 -5.0241 -1.6286 23 6 -3.2492 -5.7011 -2.0812 24 6 -3.7009 -5.5087 -3.3799 25 6 -4.8217 -6.1801 -3.8296 26 6 -5.5045 -7.0383 -2.9828 27 6 -5.0570 -7.2289 -1.6776 28 6 -3.9299 -6.5602 -1.2298 29 8 -5.8922 -8.1107 -1.0544 30 6 -7.0864 -8.1431 -1.8580 31 8 -6.6203 -7.8017 -3.1770 32 6 -1.3886 -4.0063 -2.4024 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3634 0.5139 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 1.6077 1.9807 -0.8435 38 1 1.7491 1.9307 0.9302 39 1 3.1266 1.4437 -0.0867 40 1 3.9326 -0.5029 -4.4967 41 1 0.5161 -4.8942 0.1323 42 1 -0.5542 -3.4744 0.3525 43 1 -3.1733 -4.8367 -4.0406 44 1 -5.1685 -6.0326 -4.8417 45 1 -3.5811 -6.7069 -0.2183 46 1 -7.8068 -7.4061 -1.5033 47 1 -7.5243 -9.1414 -1.8531 48 1 -1.9219 -3.0563 -2.3649 49 1 -1.2695 -4.3322 -3.4357 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072310789.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -169.165942 kcal Electronic energy + Delta-G solvation = -34568.913055 eV Core-core repulsion = 29847.696511 eV Total energy + Delta-G solvation = -4721.216544 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.21961 -42.34999 -40.99462 -38.85573 -38.15793 -37.30867 -37.18654 -35.72345 -34.48119 -34.02895 -31.63618 -30.10890 -29.24478 -28.97783 -27.72426 -26.75413 -25.87712 -24.66807 -24.37443 -23.33541 -21.43449 -21.15180 -20.68631 -19.37013 -19.02068 -18.88421 -18.65162 -18.33912 -17.92363 -17.54417 -17.04237 -16.75095 -16.49254 -16.39833 -16.07361 -15.53342 -15.22362 -15.13156 -15.02091 -14.92206 -14.72578 -14.61362 -14.46764 -14.12397 -14.02948 -13.81786 -13.74677 -13.55037 -13.29246 -13.04116 -12.87790 -12.76072 -12.69423 -12.66514 -12.53168 -12.43529 -12.16880 -12.09701 -11.92217 -11.64089 -11.26819 -11.02117 -10.91447 -10.78094 -10.72276 -10.41850 -9.82617 -8.75508 -8.28804 -6.46242 -0.09861 0.09299 1.24306 1.33721 1.41965 1.45270 1.51443 1.57207 1.86170 2.12428 2.38651 2.49478 2.52558 2.98228 3.13101 3.25666 3.42752 3.61788 3.79085 3.85385 3.92606 3.98064 4.04061 4.15801 4.25759 4.26137 4.29667 4.33329 4.43256 4.48656 4.53278 4.62201 4.72013 4.79971 4.88112 4.93102 4.96543 5.00225 5.07462 5.09189 5.10392 5.16894 5.22406 5.35380 5.51323 5.56885 5.61940 5.66539 5.79548 6.00597 6.05896 6.32228 6.74901 6.75227 7.20788 7.28906 8.78667 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.001947 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.784693 B =14374.621864 C =14767.355495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.123 4.123 4 C 0.205 3.795 5 H 0.036 0.964 6 C -0.522 4.522 7 H 0.067 0.933 8 C 0.025 3.975 9 N -0.906 5.906 10 Si 0.965 3.035 11 H -0.259 1.259 12 H -0.279 1.279 13 H -0.277 1.277 14 O -0.364 6.364 15 C 0.461 3.539 16 O -0.538 6.538 17 C -0.092 4.092 18 H 0.145 0.855 19 C -0.129 4.129 20 C 0.521 3.479 21 O -0.537 6.537 22 N -0.551 5.551 23 C 0.170 3.830 24 C -0.137 4.137 25 C -0.062 4.062 26 C -0.006 4.006 27 C 0.046 3.954 28 C -0.161 4.161 29 O -0.328 6.328 30 C 0.205 3.795 31 O -0.319 6.319 32 C 0.113 3.887 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.269 0.731 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.146 0.854 46 H 0.103 0.897 47 H 0.163 0.837 48 H 0.099 0.901 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 -10.094 0.749 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 C -0.180 4.180 4 C 0.154 3.846 5 H 0.054 0.946 6 C -0.558 4.558 7 H 0.085 0.915 8 C -0.178 4.178 9 N -0.543 5.543 10 Si 0.789 3.211 11 H -0.183 1.183 12 H -0.204 1.204 13 H -0.203 1.203 14 O -0.280 6.280 15 C 0.304 3.696 16 O -0.430 6.430 17 C -0.112 4.112 18 H 0.162 0.838 19 C -0.168 4.168 20 C 0.311 3.689 21 O -0.415 6.415 22 N -0.274 5.274 23 C 0.076 3.924 24 C -0.157 4.157 25 C -0.081 4.081 26 C -0.051 4.051 27 C 0.000 4.000 28 C -0.181 4.181 29 O -0.244 6.244 30 C 0.094 3.906 31 O -0.236 6.236 32 C -0.008 4.008 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.188 0.812 44 H 0.188 0.812 45 H 0.163 0.837 46 H 0.121 0.879 47 H 0.180 0.820 48 H 0.117 0.883 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.088 -10.397 0.899 19.177 hybrid contribution 0.688 0.081 -0.190 0.719 sum -15.400 -10.316 0.709 18.550 Atomic orbital electron populations 1.21808 0.95289 1.00557 1.01101 1.21459 0.95136 0.97429 0.98265 1.21584 1.01607 0.94275 1.00519 1.20734 0.93946 0.75234 0.94698 0.94600 1.21366 0.91334 1.50023 0.93107 0.91466 1.25993 1.03485 0.93048 0.95244 1.70092 1.38068 1.47850 0.98337 0.85399 0.78939 0.77853 0.78890 1.18298 1.20425 1.20276 1.86796 1.34332 1.36353 1.70545 1.23261 0.80428 0.91083 0.74786 1.90581 1.56496 1.51999 1.43877 1.21886 0.98693 0.92334 0.98274 0.83754 1.22272 0.97361 1.00776 0.96430 1.21277 0.85044 0.82074 0.80476 1.90629 1.67645 1.38096 1.45082 1.45832 1.25633 1.38346 1.17565 1.17374 0.87310 0.94162 0.93560 1.20901 0.97918 1.03363 0.93515 1.20177 0.94133 0.93108 1.00693 1.20009 0.92234 0.98514 0.94342 1.19569 0.95249 0.93535 0.91598 1.20224 0.95860 0.99573 1.02492 1.87340 1.27969 1.58685 1.50447 1.26136 0.86217 1.05934 0.72309 1.87335 1.40315 1.65808 1.30094 1.22305 0.89783 0.91780 0.96889 0.94298 0.91552 0.94080 0.91731 0.94558 0.91433 0.92447 0.92179 0.84474 0.86643 0.81217 0.81188 0.83687 0.87908 0.81967 0.88305 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.84 71.98 0.56 -4.04 16 2 C -0.10 -4.12 2.74 -10.80 -0.03 -4.15 16 3 C -0.12 -4.49 8.98 71.98 0.65 -3.85 16 4 C 0.21 9.82 1.93 29.85 0.06 9.88 16 5 H 0.04 2.00 6.39 -2.39 -0.02 1.98 16 6 C -0.52 -26.55 7.13 25.60 0.18 -26.37 16 7 H 0.07 3.33 7.82 -2.91 -0.02 3.31 16 8 C 0.03 1.29 5.45 84.65 0.46 1.76 16 9 N -0.91 -49.83 12.84 21.44 0.28 -49.56 16 10 Si 0.97 40.24 29.54 68.60 2.03 42.26 16 11 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 14 O -0.36 -16.01 9.80 -51.43 -0.50 -16.51 16 15 C 0.46 17.08 5.63 71.23 0.40 17.49 16 16 O -0.54 -22.32 12.65 21.93 0.28 -22.05 16 17 C -0.09 -2.36 3.66 -10.49 -0.04 -2.40 16 18 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 19 C -0.13 -3.05 6.41 30.59 0.20 -2.85 16 20 C 0.52 14.01 7.92 87.90 0.70 14.71 16 21 O -0.54 -17.57 14.81 -3.10 -0.05 -17.62 16 22 N -0.55 -13.17 3.14 -627.59 -1.97 -15.14 16 23 C 0.17 4.08 6.60 38.10 0.25 4.33 16 24 C -0.14 -2.49 9.41 22.40 0.21 -2.28 16 25 C -0.06 -1.09 10.05 22.33 0.22 -0.87 16 26 C -0.01 -0.13 7.15 22.60 0.16 0.03 16 27 C 0.05 1.17 7.15 22.58 0.16 1.33 16 28 C -0.16 -4.43 9.30 22.47 0.21 -4.22 16 29 O -0.33 -7.81 11.40 -76.19 -0.87 -8.68 16 30 C 0.20 3.04 8.89 113.37 1.01 4.05 16 31 O -0.32 -6.38 11.41 -77.10 -0.88 -7.26 16 32 C 0.11 2.48 5.86 86.83 0.51 2.99 16 33 H 0.04 1.35 6.06 -2.39 -0.01 1.33 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.57 7.78 -2.38 -0.02 1.55 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.24 6.90 -2.38 -0.02 2.22 16 40 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.12 2.78 7.89 -2.39 -0.02 2.76 16 43 H 0.17 2.19 6.74 -2.91 -0.02 2.17 16 44 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.15 4.62 5.25 -2.91 -0.02 4.61 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.10 2.37 6.96 -2.38 -0.02 2.36 16 49 H 0.12 2.06 7.24 -2.38 -0.02 2.04 16 Total: -1.00 -69.82 399.55 5.18 -64.65 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 1.00 Total: 24.38 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.87 Total: 5.53 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.70 Total: -64.70 kcal Atomic # 8 Polarization: -70.09 SS G_CDS: -2.02 Total: -72.11 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -69.82 5.18 -64.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310789.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.519 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds