Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46853 * 2 1 4 4 C 1.53000 * 109.47212 * 119.99634 * 2 1 3 5 5 H 1.08996 * 109.47122 * 185.55370 * 4 2 1 6 6 C 1.50705 * 109.46991 * 65.55859 * 4 2 1 7 7 H 1.07999 * 119.99603 * 245.44702 * 6 4 2 8 8 C 1.37878 * 120.00313 * 65.44201 * 6 4 2 9 9 N 1.31518 * 119.99585 * 5.23326 * 8 6 4 10 10 Si 1.86794 * 120.00163 * 185.23589 * 8 6 4 11 11 H 1.48492 * 109.47142 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47024 * 119.99871 * 10 8 6 13 13 H 1.48499 * 109.46968 * 239.99675 * 10 8 6 14 14 O 1.45197 * 109.47647 * 305.55873 * 4 2 1 15 15 C 1.34234 * 116.99656 * 270.00400 * 14 4 2 16 16 O 1.20821 * 119.99943 * 359.97438 * 15 14 4 17 17 C 1.50707 * 119.99723 * 179.97438 * 15 14 4 18 18 H 1.08998 * 110.85379 * 303.78356 * 17 15 14 19 19 C 1.54630 * 110.97235 * 67.61395 * 17 15 14 20 20 C 1.51280 * 104.19367 * 142.91709 * 19 17 15 21 21 O 1.21286 * 124.93922 * 163.75237 * 20 19 17 22 22 N 1.34422 * 110.11673 * 343.74535 * 20 19 17 23 23 C 1.40096 * 124.34858 * 179.61052 * 22 20 19 24 24 C 1.38840 * 119.99977 * 173.95605 * 23 22 20 25 25 C 1.38180 * 120.06828 * 179.72448 * 24 23 22 26 26 C 1.38553 * 120.11375 * 0.54713 * 25 24 23 27 27 C 1.39282 * 119.94573 * 359.72990 * 26 25 24 28 28 C 1.38487 * 119.89808 * 359.97438 * 27 26 25 29 29 O 1.36518 * 108.64187 * 179.97438 * 27 26 25 30 30 C 1.43986 * 105.49403 * 342.70390 * 29 27 26 31 31 O 1.36600 * 131.43860 * 179.72558 * 26 25 24 32 32 C 1.46762 * 111.29781 * 359.59669 * 22 20 19 33 33 H 1.08997 * 109.47531 * 60.00372 * 1 2 3 34 34 H 1.09000 * 109.47010 * 299.99547 * 1 2 3 35 35 H 1.09000 * 109.46741 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47279 * 240.00025 * 2 1 3 37 37 H 1.09005 * 109.47297 * 54.79998 * 3 2 1 38 38 H 1.08997 * 109.47234 * 174.79991 * 3 2 1 39 39 H 1.08999 * 109.47328 * 294.80012 * 3 2 1 40 40 H 0.96995 * 119.99889 * 179.97438 * 9 8 6 41 41 H 1.08998 * 110.48476 * 261.59925 * 19 17 15 42 42 H 1.09004 * 110.48028 * 24.23606 * 19 17 15 43 43 H 1.08002 * 119.96778 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.93807 * 180.29802 * 25 24 23 45 45 H 1.07993 * 120.01505 * 180.02562 * 28 27 26 46 46 H 1.09001 * 110.57136 * 268.58613 * 30 29 27 47 47 H 1.08999 * 110.56754 * 145.72095 * 30 29 27 48 48 H 1.08998 * 110.24371 * 258.00905 * 32 22 20 49 49 H 1.09004 * 110.24509 * 136.01709 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1254 -0.6358 1.3004 6 6 1.6532 -2.1762 1.1825 7 1 0.9571 -2.5833 1.9008 8 6 2.1879 -2.9875 0.2043 9 7 3.1121 -2.5192 -0.6058 10 14 1.5996 -4.7518 0.0295 11 1 0.5618 -5.0313 1.0541 12 1 1.0233 -4.9495 -1.3248 13 1 2.7456 -5.6768 0.2197 14 8 1.4509 -0.1176 2.4311 15 6 2.1210 0.9003 2.9939 16 8 3.1653 1.2742 2.5151 17 6 1.5705 1.5768 4.2230 18 1 0.5623 1.9495 4.0421 19 6 1.5987 0.6226 5.4394 20 6 1.9507 1.5191 6.6060 21 8 1.8038 1.2285 7.7744 22 7 2.4501 2.6844 6.1594 23 6 2.8657 3.7354 6.9872 24 6 3.4840 4.8500 6.4366 25 6 3.8894 5.8899 7.2512 26 6 3.6903 5.8186 8.6205 27 6 3.0755 4.6993 9.1763 28 6 2.6640 3.6602 8.3585 29 8 2.9979 4.8704 10.5285 30 6 3.9361 5.9178 10.8382 31 8 3.9974 6.6915 9.6253 32 6 2.5042 2.7141 4.6930 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 1.6025 1.9826 0.8398 38 1 3.1259 1.4440 0.0931 39 1 1.7546 1.9288 -0.9329 40 1 3.4885 -3.0900 -1.2937 41 1 0.6199 0.1673 5.5899 42 1 2.3609 -0.1449 5.3045 43 1 3.6447 4.9060 5.3701 44 1 4.3658 6.7580 6.8201 45 1 2.1868 2.7916 8.7874 46 1 4.9139 5.4984 11.0752 47 1 3.5698 6.5282 11.6636 48 1 3.5226 2.5324 4.3495 49 1 2.1459 3.6742 4.3217 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072310790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -165.687489 kcal Electronic energy + Delta-G solvation = -34475.010996 eV Core-core repulsion = 29753.945289 eV Total energy + Delta-G solvation = -4721.065707 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.161 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.21212 -42.37697 -41.16869 -38.85059 -38.28377 -37.30279 -37.26223 -35.81386 -34.18525 -33.97801 -31.62575 -30.13143 -29.27701 -28.95379 -27.74837 -26.75614 -25.93035 -24.62806 -24.36954 -23.37674 -21.64736 -21.26800 -20.44742 -19.35486 -18.98592 -18.82768 -18.50388 -18.35318 -17.96325 -17.55854 -17.09446 -16.74071 -16.63958 -16.40368 -15.97094 -15.51848 -15.32953 -15.08969 -15.01428 -14.74401 -14.69110 -14.61740 -14.53959 -14.19502 -14.02584 -13.83590 -13.79480 -13.71417 -13.23163 -13.07270 -12.91286 -12.82594 -12.74798 -12.59723 -12.54633 -12.33915 -12.16903 -12.09678 -11.93709 -11.51113 -11.31687 -11.19340 -10.87912 -10.78461 -10.67749 -10.43038 -9.81650 -8.74796 -8.23535 -6.34410 -0.08841 0.10355 1.24113 1.34287 1.36254 1.42600 1.45410 1.56561 1.85221 2.02634 2.42987 2.49498 2.53778 3.00779 3.09273 3.20910 3.43395 3.60767 3.79292 3.82547 3.93120 3.99232 4.04399 4.13444 4.28081 4.32627 4.36530 4.43567 4.46104 4.47647 4.49861 4.61887 4.71524 4.80568 4.87010 4.94861 4.99023 5.01700 5.10274 5.10327 5.18053 5.20913 5.28820 5.46995 5.52274 5.61820 5.72144 5.73858 5.80846 6.03326 6.06611 6.21723 6.69665 6.76098 7.04077 7.35375 8.85000 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.001894 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.030987 B =14782.753409 C =15546.176067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C -0.127 4.127 4 C 0.233 3.767 5 H 0.009 0.991 6 C -0.532 4.532 7 H 0.066 0.934 8 C 0.021 3.979 9 N -0.915 5.915 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.283 1.283 14 O -0.351 6.351 15 C 0.461 3.539 16 O -0.531 6.531 17 C -0.084 4.084 18 H 0.162 0.838 19 C -0.134 4.134 20 C 0.520 3.480 21 O -0.538 6.538 22 N -0.552 5.552 23 C 0.171 3.829 24 C -0.134 4.134 25 C -0.063 4.063 26 C -0.006 4.006 27 C 0.044 3.956 28 C -0.161 4.161 29 O -0.329 6.329 30 C 0.205 3.795 31 O -0.319 6.319 32 C 0.111 3.889 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.267 0.733 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.173 0.827 44 H 0.171 0.829 45 H 0.144 0.856 46 H 0.102 0.898 47 H 0.163 0.837 48 H 0.097 0.903 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 18.051 14.193 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.126 4.126 3 C -0.185 4.185 4 C 0.180 3.820 5 H 0.027 0.973 6 C -0.570 4.570 7 H 0.084 0.916 8 C -0.179 4.179 9 N -0.553 5.553 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.209 1.209 14 O -0.266 6.266 15 C 0.305 3.695 16 O -0.421 6.421 17 C -0.103 4.103 18 H 0.180 0.820 19 C -0.173 4.173 20 C 0.310 3.690 21 O -0.416 6.416 22 N -0.274 5.274 23 C 0.076 3.924 24 C -0.154 4.154 25 C -0.081 4.081 26 C -0.051 4.051 27 C -0.001 4.001 28 C -0.182 4.182 29 O -0.245 6.245 30 C 0.094 3.906 31 O -0.236 6.236 32 C -0.010 4.010 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.158 0.842 42 H 0.127 0.873 43 H 0.191 0.809 44 H 0.188 0.812 45 H 0.162 0.838 46 H 0.119 0.881 47 H 0.180 0.820 48 H 0.115 0.885 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.005 18.029 14.652 23.253 hybrid contribution 0.351 -1.288 -0.046 1.336 sum -0.654 16.741 14.606 22.226 Atomic orbital electron populations 1.21513 0.94392 1.01089 1.00547 1.21418 0.96799 0.94894 0.99442 1.21783 0.99846 0.96121 1.00717 1.20330 0.92391 0.90918 0.78337 0.97304 1.21243 1.27445 0.93286 1.15015 0.91601 1.25633 0.94431 1.02675 0.95188 1.70072 1.27061 1.38212 1.19993 0.85394 0.78329 0.78936 0.78385 1.18655 1.20168 1.20850 1.86446 1.51855 1.44548 1.43785 1.23396 0.82530 0.78714 0.84900 1.90638 1.24285 1.63491 1.63727 1.21882 1.03745 0.95254 0.89415 0.82028 1.22303 1.07636 0.97510 0.89888 1.21293 0.75580 0.82168 0.89939 1.90634 1.54530 1.76411 1.20030 1.45831 1.59426 1.14047 1.08132 1.17357 0.97882 0.88867 0.88255 1.20910 1.00969 0.91602 1.01960 1.20197 0.99909 1.00499 0.87541 1.20035 1.03846 0.89072 0.92189 1.19590 1.00966 0.95920 0.83623 1.20225 1.06970 0.99328 0.91681 1.87343 1.61184 1.56584 1.19409 1.26123 0.93882 0.82150 0.88432 1.87337 1.87490 1.33350 1.15396 1.22375 1.02081 1.00742 0.75803 0.92989 0.92586 0.93754 0.91586 0.93204 0.94659 0.92542 0.92420 0.84177 0.87288 0.80944 0.81158 0.83818 0.88081 0.81954 0.88451 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.81 71.98 0.63 -3.77 16 2 C -0.11 -4.63 2.65 -10.79 -0.03 -4.66 16 3 C -0.13 -4.76 7.77 71.98 0.56 -4.20 16 4 C 0.23 11.18 1.80 29.85 0.05 11.24 16 5 H 0.01 0.51 7.13 -2.39 -0.02 0.49 16 6 C -0.53 -27.54 7.84 25.60 0.20 -27.34 16 7 H 0.07 3.37 7.82 -2.91 -0.02 3.35 16 8 C 0.02 1.08 5.23 84.65 0.44 1.52 16 9 N -0.92 -50.40 11.96 21.45 0.26 -50.14 16 10 Si 0.96 41.32 29.54 68.60 2.03 43.34 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 14 O -0.35 -13.81 8.92 -51.45 -0.46 -14.27 16 15 C 0.46 14.87 5.73 71.24 0.41 15.28 16 16 O -0.53 -19.91 12.55 21.98 0.28 -19.64 16 17 C -0.08 -1.72 3.66 -10.48 -0.04 -1.75 16 18 H 0.16 2.29 8.14 -2.39 -0.02 2.27 16 19 C -0.13 -2.91 6.41 30.59 0.20 -2.72 16 20 C 0.52 13.15 7.92 87.90 0.70 13.84 16 21 O -0.54 -17.19 14.82 -3.05 -0.05 -17.23 16 22 N -0.55 -11.81 3.14 -627.64 -1.97 -13.78 16 23 C 0.17 3.75 6.60 38.10 0.25 4.00 16 24 C -0.13 -2.14 9.40 22.40 0.21 -1.93 16 25 C -0.06 -0.99 10.05 22.33 0.22 -0.77 16 26 C -0.01 -0.14 7.15 22.60 0.16 0.03 16 27 C 0.04 1.09 7.15 22.58 0.16 1.25 16 28 C -0.16 -4.23 9.30 22.46 0.21 -4.02 16 29 O -0.33 -7.61 11.40 -76.26 -0.87 -8.48 16 30 C 0.20 2.94 8.89 113.37 1.01 3.94 16 31 O -0.32 -6.11 11.41 -77.22 -0.88 -6.99 16 32 C 0.11 1.95 5.62 86.83 0.49 2.44 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.88 7.54 -2.39 -0.02 1.86 16 35 H 0.04 1.79 7.40 -2.39 -0.02 1.77 16 36 H 0.07 3.33 6.62 -2.39 -0.02 3.31 16 37 H 0.05 1.66 6.50 -2.38 -0.02 1.65 16 38 H 0.03 1.44 7.52 -2.39 -0.02 1.43 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.27 13.92 8.31 -92.71 -0.77 13.14 16 41 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.11 2.66 7.89 -2.38 -0.02 2.64 16 43 H 0.17 1.74 7.01 -2.91 -0.02 1.72 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.14 4.43 5.25 -2.91 -0.02 4.42 16 46 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 47 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.10 1.98 6.96 -2.39 -0.02 1.96 16 49 H 0.13 1.46 7.71 -2.38 -0.02 1.45 16 Total: -1.00 -70.98 397.59 5.16 -65.82 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.00 Total: 19.01 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.84 Total: 2.36 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -1.72 Total: -63.92 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -1.98 Total: -66.62 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -70.98 5.16 -65.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072310790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.869 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds