Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30177 * 126.80188 * 2 1 4 4 O 1.20913 * 111.60220 * 180.02562 * 3 2 1 5 5 C 1.34034 * 111.57163 * 359.76617 * 4 3 2 6 6 C 1.50701 * 126.78225 * 180.28974 * 5 4 3 7 7 C 1.35448 * 106.44495 * 0.37605 * 5 4 3 8 8 C 1.50699 * 128.00995 * 179.91211 * 7 5 4 9 9 N 1.46897 * 109.47402 * 269.68188 * 8 7 5 10 10 C 1.46893 * 111.00171 * 293.95376 * 9 8 7 11 11 C 1.46898 * 111.00238 * 169.99630 * 9 8 7 12 12 C 1.50700 * 109.47297 * 189.99854 * 11 9 8 13 13 O 1.21291 * 119.99922 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00078 * 180.02562 * 12 11 9 15 15 C 1.39938 * 120.00194 * 185.74301 * 14 12 11 16 16 C 1.38684 * 120.11224 * 24.75523 * 15 14 12 17 17 C 1.38220 * 120.01894 * 180.02562 * 16 15 14 18 18 C 1.38390 * 120.24981 * 359.95655 * 17 16 15 19 19 C 1.38085 * 120.23045 * 0.02562 * 18 17 16 20 20 C 1.38994 * 119.97692 * 0.02643 * 19 18 17 21 21 S 1.76195 * 120.12502 * 179.97438 * 20 19 18 22 22 C 1.76203 * 100.00020 * 5.61963 * 21 20 19 23 23 H 1.07993 * 119.99677 * 354.96047 * 22 21 20 24 24 C 1.38687 * 119.99706 * 174.96929 * 22 21 20 25 25 N 1.31646 * 120.00649 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99638 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47271 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.46800 * 209.99983 * 26 24 22 29 29 H 1.48500 * 109.47083 * 329.99454 * 26 24 22 30 30 H 1.09001 * 109.46945 * 269.97182 * 1 2 3 31 31 H 1.09002 * 109.47278 * 29.96672 * 1 2 3 32 32 H 1.08994 * 109.47463 * 149.97253 * 1 2 3 33 33 H 1.09004 * 109.47127 * 270.10916 * 6 5 4 34 34 H 1.09000 * 109.47252 * 30.10490 * 6 5 4 35 35 H 1.08998 * 109.47448 * 150.10563 * 6 5 4 36 36 H 1.09001 * 109.47381 * 149.67989 * 8 7 5 37 37 H 1.09004 * 109.47298 * 29.68120 * 8 7 5 38 38 H 1.09007 * 109.47111 * 296.04758 * 10 9 8 39 39 H 1.08999 * 109.47382 * 56.04163 * 10 9 8 40 40 H 1.08997 * 109.47542 * 176.04381 * 10 9 8 41 41 H 1.08998 * 109.47032 * 70.00128 * 11 9 8 42 42 H 1.08997 * 109.47446 * 310.00225 * 11 9 8 43 43 H 0.97001 * 119.99879 * 5.73832 * 14 12 11 44 44 H 1.07998 * 119.98998 * 0.02562 * 16 15 14 45 45 H 1.08000 * 119.87651 * 179.97438 * 17 16 15 46 46 H 1.08008 * 119.88836 * 179.74074 * 18 17 16 47 47 H 1.08001 * 120.01104 * 179.97438 * 19 18 17 48 48 H 0.96997 * 120.00445 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 4.9021 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5863 -0.0002 9 7 1.8295 -3.0590 -1.3850 10 6 0.7111 -2.3935 -2.0660 11 6 1.6797 -4.5196 -1.4309 12 6 1.7961 -4.9920 -2.8572 13 8 1.9858 -4.1908 -3.7478 14 7 1.6895 -6.3048 -3.1431 15 6 1.9166 -6.7574 -4.4477 16 6 2.7179 -6.0234 -5.3093 17 6 2.9405 -6.4720 -6.5975 18 6 2.3669 -7.6538 -7.0331 19 6 1.5675 -8.3930 -6.1838 20 6 1.3365 -7.9502 -4.8867 21 16 0.3167 -8.8900 -3.7999 22 6 0.0278 -10.3097 -4.8026 23 1 0.3932 -10.3366 -5.8185 24 6 -0.6689 -11.3925 -4.2872 25 7 -1.1140 -11.3599 -3.0487 26 14 -0.9757 -12.8975 -5.3506 27 1 0.1453 -13.8571 -5.1855 28 1 -2.2466 -13.5449 -4.9370 29 1 -1.0701 -12.4866 -6.7745 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3634 -0.8897 -0.5142 33 1 5.2202 -1.5549 -1.0148 34 1 5.6636 -0.7851 0.5276 35 1 4.7627 -2.3202 0.5258 36 1 1.0054 -2.7037 0.5145 37 1 2.7232 -3.1702 0.5130 38 1 -0.2249 -2.6642 -1.5773 39 1 0.8470 -1.3131 -2.0172 40 1 0.6810 -2.7091 -3.1089 41 1 0.7029 -4.7973 -1.0348 42 1 2.4610 -4.9841 -0.8294 43 1 1.4555 -6.9358 -2.4446 44 1 3.1682 -5.1010 -4.9735 45 1 3.5646 -5.8984 -7.2667 46 1 2.5413 -7.9967 -8.0423 47 1 1.1213 -9.3145 -6.5275 48 1 -1.6009 -12.1173 -2.6882 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072561583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = 64.942400 kcal Electronic energy + Delta-G solvation = -30979.277598 eV Core-core repulsion = 26743.258375 eV Total energy + Delta-G solvation = -4236.019222 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.12579 -40.28326 -38.32548 -37.22634 -34.78587 -34.36154 -33.73226 -32.79427 -30.35930 -29.97554 -29.31638 -28.61689 -27.62203 -27.05014 -25.92033 -23.88628 -22.44569 -21.90509 -21.19924 -20.27136 -19.95674 -18.41771 -17.91239 -17.41847 -16.84272 -16.75701 -16.13794 -15.89853 -15.46807 -15.12443 -14.99615 -14.82684 -14.27880 -14.09224 -13.86657 -13.76963 -13.66667 -13.35111 -13.32579 -13.02803 -12.95890 -12.88879 -12.81496 -12.57658 -12.38214 -12.19133 -11.76319 -11.71122 -11.61971 -11.33203 -11.26095 -11.12014 -11.09558 -10.41660 -10.13765 -10.11822 -9.86691 -9.60814 -9.42095 -9.34860 -8.81806 -8.69792 -8.53499 -7.66862 -6.57123 -6.55734 -4.27984 1.25206 1.83311 1.91768 2.06817 2.85783 2.88615 2.98007 3.07128 3.13480 3.17058 3.33772 3.89282 3.92935 3.94816 4.20020 4.44298 4.52430 4.65887 4.71261 4.86548 4.96705 4.98250 5.03341 5.09837 5.12311 5.14581 5.16748 5.21293 5.32863 5.38879 5.45122 5.49028 5.57140 5.63214 5.65645 5.70198 5.87593 5.88476 6.02472 6.17740 6.20834 6.55084 6.63041 6.74110 6.83972 6.89529 7.10191 7.20602 7.41999 7.66910 7.76048 8.08070 8.09649 8.37713 8.92048 10.50379 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.001902 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.522336 B =14719.498211 C =15707.385688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.027 3.973 3 N -0.370 5.370 4 O 0.093 5.907 5 C -0.009 4.009 6 C -0.072 4.072 7 C -0.195 4.195 8 C 0.133 3.867 9 N -0.517 5.517 10 C 0.013 3.987 11 C 0.035 3.965 12 C 0.512 3.488 13 O -0.509 6.509 14 N -0.657 5.657 15 C 0.128 3.872 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.107 4.107 21 S 0.029 5.971 22 C -0.544 4.544 23 H 0.095 0.905 24 C 0.077 3.923 25 N -0.866 5.866 26 Si 0.924 3.076 27 H -0.273 1.273 28 H -0.280 1.280 29 H -0.268 1.268 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.411 0.589 44 H 0.137 0.863 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.138 0.862 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 15.821 8.147 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.073 4.073 6 C -0.129 4.129 7 C -0.200 4.200 8 C 0.005 3.995 9 N -0.241 5.241 10 C -0.134 4.134 11 C -0.096 4.096 12 C 0.298 3.702 13 O -0.384 6.384 14 N -0.302 5.302 15 C 0.026 3.974 16 C -0.133 4.133 17 C -0.169 4.169 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.225 4.225 21 S 0.282 5.718 22 C -0.691 4.691 23 H 0.113 0.887 24 C -0.133 4.133 25 N -0.500 5.500 26 Si 0.750 3.250 27 H -0.199 1.199 28 H -0.205 1.205 29 H -0.192 1.192 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.248 0.752 44 H 0.155 0.845 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.156 0.844 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.991 17.830 8.752 21.057 hybrid contribution -0.785 -2.563 -1.098 2.897 sum 6.206 15.267 7.654 18.171 Atomic orbital electron populations 1.20346 0.86209 1.04183 1.03414 1.23422 0.98781 0.88597 1.02451 1.73837 0.89297 1.23918 1.20582 1.84793 1.21625 1.22640 1.67982 1.24270 0.98332 0.83566 1.01162 1.20347 0.89715 0.98293 1.04580 1.20654 0.91698 0.96741 1.10872 1.20272 1.00922 0.88890 0.89404 1.61633 1.44896 1.03196 1.14411 1.22743 0.89781 0.99620 1.01290 1.21985 1.03188 0.89590 0.94823 1.20430 0.76957 0.81769 0.91026 1.90628 1.46640 1.53387 1.47777 1.43418 1.68356 1.08326 1.10130 1.17176 0.99942 0.95345 0.84940 1.21088 0.98033 1.00429 0.93777 1.20768 1.02851 0.97311 0.95972 1.20969 0.98577 0.95394 0.98995 1.21286 1.00344 1.01172 0.92591 1.22443 1.01906 0.98569 0.99537 1.83026 1.52738 1.15430 1.20579 1.23259 1.42638 1.01456 1.01767 0.88735 1.25084 0.94098 0.98612 0.95480 1.69985 1.34366 1.31769 1.13861 0.86053 0.78105 0.80732 0.80150 1.19869 1.20516 1.19208 0.90222 0.90422 0.89702 0.88862 0.90114 0.89073 0.93115 0.89227 0.95744 0.91257 0.88954 0.91224 0.87349 0.75207 0.84513 0.87025 0.87137 0.84442 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.93 36.01 0.36 -0.31 16 2 C 0.03 0.29 6.41 -82.10 -0.53 -0.24 16 3 N -0.37 -4.56 12.07 33.42 0.40 -4.15 16 4 O 0.09 1.06 11.20 17.20 0.19 1.25 16 5 C -0.01 -0.08 7.49 -35.30 -0.26 -0.35 16 6 C -0.07 -0.42 10.30 36.01 0.37 -0.05 16 7 C -0.20 -1.89 5.11 -104.43 -0.53 -2.43 16 8 C 0.13 1.09 5.29 -4.98 -0.03 1.07 16 9 N -0.52 -5.43 4.49 -245.83 -1.10 -6.54 16 10 C 0.01 0.15 7.82 60.06 0.47 0.62 16 11 C 0.04 0.36 5.45 -4.98 -0.03 0.33 16 12 C 0.51 7.39 7.36 -10.99 -0.08 7.31 16 13 O -0.51 -8.79 11.48 5.55 0.06 -8.73 16 14 N -0.66 -10.47 5.17 -9.70 -0.05 -10.52 16 15 C 0.13 2.44 6.44 -83.44 -0.54 1.90 16 16 C -0.11 -2.03 8.71 -39.42 -0.34 -2.37 16 17 C -0.15 -2.48 10.04 -39.53 -0.40 -2.88 16 18 C -0.12 -2.10 10.03 -39.58 -0.40 -2.50 16 19 C -0.13 -2.63 9.26 -39.36 -0.36 -3.00 16 20 C -0.11 -2.28 6.12 -38.75 -0.24 -2.52 16 21 S 0.03 0.67 20.37 -107.50 -2.19 -1.52 16 22 C -0.54 -14.09 9.08 30.90 0.28 -13.81 16 23 H 0.10 2.36 4.81 -52.49 -0.25 2.11 16 24 C 0.08 2.00 5.49 -17.47 -0.10 1.90 16 25 N -0.87 -23.32 13.22 55.48 0.73 -22.59 16 26 Si 0.92 19.84 29.55 -169.99 -5.02 14.82 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 29 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.62 5.50 -51.93 -0.29 0.34 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.41 7.43 -51.93 -0.39 0.03 16 36 H 0.05 0.38 8.12 -51.93 -0.42 -0.05 16 37 H 0.09 0.57 7.23 -51.93 -0.38 0.20 16 38 H 0.02 0.24 7.57 -51.92 -0.39 -0.15 16 39 H 0.07 0.78 5.32 -51.93 -0.28 0.50 16 40 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.11 0.83 7.93 -51.93 -0.41 0.42 16 43 H 0.41 6.07 7.65 -40.82 -0.31 5.76 16 44 H 0.14 2.46 5.79 -52.49 -0.30 2.16 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 47 H 0.14 2.92 4.93 -52.49 -0.26 2.67 16 48 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -31.61 402.48 -9.34 -40.94 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.08 Total: 8.31 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.35 Total: -17.33 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.02 Total: -43.81 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.26 Total: -7.48 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.19 Total: -1.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.61 -9.34 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072561583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.886 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds