Wall clock time and date at job start Tue Mar 31 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30177 * 126.80188 * 2 1 4 4 O 1.20913 * 111.60220 * 180.02562 * 3 2 1 5 5 C 1.34034 * 111.57163 * 359.76617 * 4 3 2 6 6 C 1.50701 * 126.78225 * 180.28974 * 5 4 3 7 7 C 1.35448 * 106.44495 * 0.37605 * 5 4 3 8 8 C 1.50699 * 128.00995 * 179.91211 * 7 5 4 9 9 N 1.46897 * 109.47402 * 269.68188 * 8 7 5 10 10 C 1.46893 * 111.00171 * 293.95376 * 9 8 7 11 11 C 1.46898 * 111.00238 * 169.99630 * 9 8 7 12 12 C 1.50700 * 109.47297 * 189.99854 * 11 9 8 13 13 O 1.21291 * 119.99922 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00078 * 180.02562 * 12 11 9 15 15 C 1.39938 * 120.00194 * 185.74301 * 14 12 11 16 16 C 1.38684 * 120.11224 * 24.75523 * 15 14 12 17 17 C 1.38220 * 120.01894 * 180.02562 * 16 15 14 18 18 C 1.38390 * 120.24981 * 359.95655 * 17 16 15 19 19 C 1.38085 * 120.23045 * 0.02562 * 18 17 16 20 20 C 1.38994 * 119.97692 * 0.02643 * 19 18 17 21 21 S 1.76195 * 120.12502 * 179.97438 * 20 19 18 22 22 C 1.76203 * 100.00020 * 5.61963 * 21 20 19 23 23 H 1.07993 * 119.99677 * 354.96047 * 22 21 20 24 24 C 1.38687 * 119.99706 * 174.96929 * 22 21 20 25 25 N 1.31646 * 120.00649 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99638 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47271 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.46800 * 209.99983 * 26 24 22 29 29 H 1.48500 * 109.47083 * 329.99454 * 26 24 22 30 30 H 1.09001 * 109.46945 * 269.97182 * 1 2 3 31 31 H 1.09002 * 109.47278 * 29.96672 * 1 2 3 32 32 H 1.08994 * 109.47463 * 149.97253 * 1 2 3 33 33 H 1.09004 * 109.47127 * 270.10916 * 6 5 4 34 34 H 1.09000 * 109.47252 * 30.10490 * 6 5 4 35 35 H 1.08998 * 109.47448 * 150.10563 * 6 5 4 36 36 H 1.09001 * 109.47381 * 149.67989 * 8 7 5 37 37 H 1.09004 * 109.47298 * 29.68120 * 8 7 5 38 38 H 1.09007 * 109.47111 * 296.04758 * 10 9 8 39 39 H 1.08999 * 109.47382 * 56.04163 * 10 9 8 40 40 H 1.08997 * 109.47542 * 176.04381 * 10 9 8 41 41 H 1.08998 * 109.47032 * 70.00128 * 11 9 8 42 42 H 1.08997 * 109.47446 * 310.00225 * 11 9 8 43 43 H 0.97001 * 119.99879 * 5.73832 * 14 12 11 44 44 H 1.07998 * 119.98998 * 0.02562 * 16 15 14 45 45 H 1.08000 * 119.87651 * 179.97438 * 17 16 15 46 46 H 1.08008 * 119.88836 * 179.74074 * 18 17 16 47 47 H 1.08001 * 120.01104 * 179.97438 * 19 18 17 48 48 H 0.96997 * 120.00445 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6067 0.0042 6 6 4.9021 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5863 -0.0002 9 7 1.8295 -3.0590 -1.3850 10 6 0.7111 -2.3935 -2.0660 11 6 1.6797 -4.5196 -1.4309 12 6 1.7961 -4.9920 -2.8572 13 8 1.9858 -4.1908 -3.7478 14 7 1.6895 -6.3048 -3.1431 15 6 1.9166 -6.7574 -4.4477 16 6 2.7179 -6.0234 -5.3093 17 6 2.9405 -6.4720 -6.5975 18 6 2.3669 -7.6538 -7.0331 19 6 1.5675 -8.3930 -6.1838 20 6 1.3365 -7.9502 -4.8867 21 16 0.3167 -8.8900 -3.7999 22 6 0.0278 -10.3097 -4.8026 23 1 0.3932 -10.3366 -5.8185 24 6 -0.6689 -11.3925 -4.2872 25 7 -1.1140 -11.3599 -3.0487 26 14 -0.9757 -12.8975 -5.3506 27 1 0.1453 -13.8571 -5.1855 28 1 -2.2466 -13.5449 -4.9370 29 1 -1.0701 -12.4866 -6.7745 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3634 -0.8897 -0.5142 33 1 5.2202 -1.5549 -1.0148 34 1 5.6636 -0.7851 0.5276 35 1 4.7627 -2.3202 0.5258 36 1 1.0054 -2.7037 0.5145 37 1 2.7232 -3.1702 0.5130 38 1 -0.2249 -2.6642 -1.5773 39 1 0.8470 -1.3131 -2.0172 40 1 0.6810 -2.7091 -3.1089 41 1 0.7029 -4.7973 -1.0348 42 1 2.4610 -4.9841 -0.8294 43 1 1.4555 -6.9358 -2.4446 44 1 3.1682 -5.1010 -4.9735 45 1 3.5646 -5.8984 -7.2667 46 1 2.5413 -7.9967 -8.0423 47 1 1.1213 -9.3145 -6.5275 48 1 -1.6009 -12.1173 -2.6882 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072561583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:30 Heat of formation + Delta-G solvation = 45.687603 kcal Electronic energy + Delta-G solvation = -30980.112548 eV Core-core repulsion = 26743.258375 eV Total energy + Delta-G solvation = -4236.854173 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.89282 -41.50903 -39.51469 -38.25881 -35.76599 -35.47420 -34.71089 -34.40327 -31.86895 -31.13692 -30.00754 -29.44285 -28.57598 -27.83871 -27.72647 -24.84533 -23.87209 -23.19349 -22.01713 -21.17807 -20.96678 -20.11002 -18.70730 -18.47368 -18.20343 -17.74817 -17.52632 -17.01708 -16.87021 -16.28854 -15.97577 -15.86058 -15.60257 -15.18584 -15.03492 -14.68610 -14.55670 -14.50464 -14.32651 -14.07068 -13.97388 -13.82597 -13.64064 -13.51632 -13.36025 -13.02335 -12.99162 -12.91561 -12.85989 -12.77149 -12.58862 -12.47437 -12.09471 -11.82236 -11.61588 -11.38530 -11.34347 -10.86996 -10.65604 -10.59091 -10.34442 -10.12954 -9.33576 -9.11191 -8.48450 -8.31517 -6.21756 0.40967 0.52770 0.55697 1.16421 1.28446 1.39127 1.46096 1.60306 1.68185 2.06356 2.18883 2.25161 2.87603 3.01586 3.05686 3.16988 3.23947 3.55045 3.69315 3.89612 3.99689 4.11168 4.26776 4.28635 4.34945 4.40033 4.41744 4.49682 4.53848 4.59512 4.63802 4.67647 4.69828 4.73109 4.75952 4.79413 4.84615 4.98135 5.04653 5.09796 5.19970 5.32150 5.34309 5.46194 5.51438 5.67453 5.74846 5.85864 5.97877 6.14217 6.24183 6.52765 6.97526 7.18582 7.33286 8.60150 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.001902 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.522336 B =14719.498211 C =15707.385688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.020 3.980 3 N -0.404 5.404 4 O 0.076 5.924 5 C -0.009 4.009 6 C -0.071 4.071 7 C -0.207 4.207 8 C 0.136 3.864 9 N -0.529 5.529 10 C 0.020 3.980 11 C 0.043 3.957 12 C 0.511 3.489 13 O -0.538 6.538 14 N -0.659 5.659 15 C 0.132 3.868 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.143 4.143 20 C -0.130 4.130 21 S -0.009 6.009 22 C -0.564 4.564 23 H 0.096 0.904 24 C 0.028 3.972 25 N -0.900 5.900 26 Si 0.989 3.011 27 H -0.267 1.267 28 H -0.275 1.275 29 H -0.263 1.263 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.141 0.859 43 H 0.416 0.584 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.124 0.876 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 15.745 8.178 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 N -0.114 5.114 4 O 0.015 5.985 5 C -0.073 4.073 6 C -0.128 4.128 7 C -0.212 4.212 8 C 0.009 3.991 9 N -0.254 5.254 10 C -0.128 4.128 11 C -0.088 4.088 12 C 0.300 3.700 13 O -0.415 6.415 14 N -0.304 5.304 15 C 0.030 3.970 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.140 4.140 19 C -0.169 4.169 20 C -0.247 4.247 21 S 0.242 5.758 22 C -0.711 4.711 23 H 0.113 0.887 24 C -0.179 4.179 25 N -0.536 5.536 26 Si 0.811 3.189 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.187 1.187 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.159 0.841 43 H 0.253 0.747 44 H 0.159 0.841 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.141 0.859 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.155 17.795 8.780 21.453 hybrid contribution -1.011 -2.351 -1.170 2.814 sum 7.144 15.444 7.610 18.640 Atomic orbital electron populations 1.20427 0.84815 1.04388 1.04440 1.23910 0.99884 0.88732 1.01417 1.73825 0.89886 1.25159 1.22516 1.84749 1.21422 1.23833 1.68473 1.24944 0.99735 0.82966 0.99703 1.20526 0.88484 0.98894 1.04928 1.20900 0.91636 0.97318 1.11328 1.20370 1.02449 0.88113 0.88136 1.61562 1.44613 1.03250 1.15965 1.22584 0.90967 0.99401 0.99828 1.22030 1.05390 0.89543 0.91820 1.21260 0.75405 0.80675 0.92701 1.90615 1.47769 1.53846 1.49224 1.43540 1.68512 1.09230 1.09154 1.17372 0.98892 0.94373 0.86398 1.21296 0.98147 1.00556 0.94386 1.21221 1.01507 0.96711 0.95827 1.21258 0.97564 0.95194 0.99974 1.21363 1.01227 1.01272 0.93014 1.22411 1.03126 0.99518 0.99652 1.82833 1.55202 1.15848 1.21960 1.23610 1.42749 1.02479 1.02250 0.88690 1.25971 0.93820 1.01384 0.96683 1.70082 1.35384 1.32719 1.15371 0.85073 0.78153 0.77147 0.78521 1.19182 1.19961 1.18703 0.88711 0.90610 0.89048 0.88995 0.88556 0.87158 0.91807 0.86746 0.94320 0.91656 0.92015 0.89399 0.84126 0.74662 0.84082 0.83514 0.84010 0.85876 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 9.93 71.24 0.71 -0.54 16 2 C 0.02 0.40 6.41 43.58 0.28 0.68 16 3 N -0.40 -10.00 12.07 -49.57 -0.60 -10.59 16 4 O 0.08 1.71 11.20 71.71 0.80 2.51 16 5 C -0.01 -0.16 7.49 25.04 0.19 0.03 16 6 C -0.07 -0.68 10.30 71.24 0.73 0.06 16 7 C -0.21 -3.68 5.11 -19.74 -0.10 -3.78 16 8 C 0.14 1.84 5.29 85.56 0.45 2.30 16 9 N -0.53 -9.92 4.49 -931.68 -4.18 -14.11 16 10 C 0.02 0.43 7.82 127.69 1.00 1.43 16 11 C 0.04 0.75 5.45 85.56 0.47 1.22 16 12 C 0.51 14.09 7.36 87.66 0.64 14.74 16 13 O -0.54 -18.15 11.48 -3.06 -0.04 -18.19 16 14 N -0.66 -20.57 5.17 -303.00 -1.57 -22.14 16 15 C 0.13 4.97 6.44 38.31 0.25 5.22 16 16 C -0.12 -4.26 8.71 22.37 0.19 -4.06 16 17 C -0.13 -4.09 10.04 22.30 0.22 -3.87 16 18 C -0.12 -3.99 10.03 22.27 0.22 -3.77 16 19 C -0.14 -5.88 9.26 22.41 0.21 -5.67 16 20 C -0.13 -5.61 6.12 22.81 0.14 -5.47 16 21 S -0.01 -0.45 20.37 -56.49 -1.15 -1.60 16 22 C -0.56 -29.88 9.08 67.93 0.62 -29.26 16 23 H 0.10 4.87 4.81 -2.91 -0.01 4.85 16 24 C 0.03 1.45 5.49 84.83 0.47 1.91 16 25 N -0.90 -49.39 13.22 21.63 0.29 -49.10 16 26 Si 0.99 40.88 29.55 68.60 2.03 42.90 16 27 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.22 5.50 -2.39 -0.01 1.20 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.63 7.43 -2.39 -0.02 0.61 16 36 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.11 0.99 7.23 -2.38 -0.02 0.97 16 38 H 0.04 0.69 7.57 -2.38 -0.02 0.68 16 39 H 0.06 1.43 5.32 -2.39 -0.01 1.42 16 40 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 41 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 42 H 0.14 1.61 7.93 -2.39 -0.02 1.59 16 43 H 0.42 12.13 7.65 -92.71 -0.71 11.42 16 44 H 0.14 4.85 5.79 -2.91 -0.02 4.84 16 45 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 46 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 47 H 0.12 5.34 4.93 -2.91 -0.01 5.33 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -70.80 402.48 2.59 -68.21 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.32 Total: 30.95 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 6.69 Total: -28.85 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -6.06 Total: -95.94 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.77 Total: -15.67 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.15 Total: -1.60 kcal Total: -70.80 2.59 -68.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072561583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.898 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds