Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48502 * 109.46993 * 239.99719 * 3 2 1 5 5 H 1.48498 * 109.46992 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47287 * 119.99716 * 3 2 1 7 7 C 1.39915 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99607 * 175.56131 * 7 2 1 9 9 C 1.41153 * 119.99702 * 355.56132 * 7 2 1 10 10 C 1.40865 * 120.16115 * 214.77641 * 9 7 2 11 11 C 1.36373 * 119.82879 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16639 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82873 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00319 * 35.28997 * 13 12 11 15 15 O 1.21279 * 119.99880 * 355.70365 * 14 13 12 16 16 C 1.50702 * 119.99857 * 175.70944 * 14 13 12 17 17 O 1.42903 * 109.46826 * 179.97438 * 16 14 13 18 18 C 1.35923 * 116.99946 * 179.97438 * 17 16 14 19 19 C 1.38715 * 120.05860 * 359.72613 * 18 17 16 20 20 C 1.38143 * 119.95420 * 179.81115 * 19 18 17 21 21 N 1.48009 * 119.95925 * 180.18568 * 20 19 18 22 22 O 1.21805 * 119.99970 * 180.25425 * 21 20 19 23 23 O 1.21793 * 120.00227 * 0.25947 * 21 20 19 24 24 C 1.38275 * 120.08136 * 0.43993 * 20 19 18 25 25 C 1.38245 * 120.11540 * 359.79133 * 24 20 19 26 26 C 1.38253 * 120.04530 * 359.97438 * 25 24 20 27 27 Cl 1.73603 * 120.04144 * 179.97438 * 26 25 24 28 28 C 1.39476 * 120.33391 * 0.25501 * 12 11 10 29 29 C 1.36373 * 120.16710 * 359.48326 * 28 12 11 30 30 H 0.96997 * 119.99490 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.08922 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.91520 * 179.97438 * 11 10 9 33 33 H 0.97005 * 119.99286 * 215.28836 * 13 12 11 34 34 H 1.08991 * 109.46966 * 59.99947 * 16 14 13 35 35 H 1.09004 * 109.46705 * 299.99449 * 16 14 13 36 36 H 1.08000 * 120.01840 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.94482 * 179.76567 * 24 20 19 38 38 H 1.08002 * 119.97733 * 179.97438 * 25 24 20 39 39 H 1.07995 * 119.91579 * 179.74391 * 28 12 11 40 40 H 1.08003 * 120.08675 * 180.25843 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0966 1.6962 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2118 0.0005 8 1 3.0858 -1.2132 -0.0718 9 6 1.3055 -2.4322 0.0957 10 6 1.8647 -3.5180 0.7975 11 6 1.1801 -4.6942 0.8847 12 6 -0.0705 -4.8238 0.2808 13 7 -0.7632 -6.0281 0.3738 14 6 -0.6815 -6.7675 1.4977 15 8 0.0558 -6.4240 2.3973 16 6 -1.5061 -8.0212 1.6364 17 8 -1.2463 -8.6242 2.9057 18 6 -1.9153 -9.7722 3.1920 19 6 -2.8076 -10.3042 2.2727 20 6 -3.4834 -11.4732 2.5643 21 7 -4.4324 -12.0431 1.5818 22 8 -5.0321 -13.0713 1.8401 23 8 -4.6135 -11.4840 0.5151 24 6 -3.2783 -12.1087 3.7751 25 6 -2.3934 -11.5788 4.6956 26 6 -1.7107 -10.4117 4.4069 27 17 -0.6000 -9.7459 5.5632 28 6 -0.6281 -3.7550 -0.4207 29 6 0.0422 -2.5709 -0.5120 30 1 -0.4849 0.8401 -0.0004 31 1 2.8331 -3.4194 1.2653 32 1 1.6077 -5.5278 1.4221 33 1 -1.3046 -6.3349 -0.3703 34 1 -1.2423 -8.7194 0.8421 35 1 -2.5643 -7.7700 1.5629 36 1 -2.9718 -9.8061 1.3286 37 1 -3.8107 -13.0205 4.0023 38 1 -2.2352 -12.0768 5.6408 39 1 -1.5950 -3.8641 -0.8893 40 1 -0.3926 -1.7428 -1.0521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075092225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -20.587167 kcal Electronic energy + Delta-G solvation = -29535.546487 eV Core-core repulsion = 24924.389866 eV Total energy + Delta-G solvation = -4611.156620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.65844 -41.08652 -39.80160 -38.30535 -37.19832 -37.08364 -36.98681 -34.59116 -33.08287 -32.44856 -31.33898 -29.86246 -29.53924 -28.29476 -26.95216 -24.99599 -23.58451 -22.99357 -21.78651 -20.95187 -20.30341 -19.87504 -19.12781 -17.98674 -17.96570 -17.65393 -17.39356 -17.19517 -16.86703 -16.44821 -16.10980 -15.23899 -15.06099 -14.84441 -14.47395 -14.03390 -13.77265 -13.69065 -13.06511 -13.01143 -12.78816 -12.65325 -12.34170 -12.22705 -12.01728 -11.88723 -11.75179 -11.63218 -11.55109 -11.46214 -11.43762 -11.20036 -11.07760 -10.80311 -10.14325 -10.03677 -9.59583 -9.57308 -9.26357 -9.18958 -9.00550 -7.64065 -6.98173 -6.69255 -4.42250 -0.81079 0.23064 0.75300 0.82649 1.41842 2.06729 2.36082 2.49025 2.88766 3.01412 3.05413 3.07751 3.20721 3.48890 3.68309 3.81873 3.92502 3.92821 4.28431 4.39530 4.56593 4.59584 4.65932 4.72186 4.76925 4.98193 5.06439 5.37134 5.56624 5.86281 6.09504 6.32850 6.36051 6.60238 6.79842 6.97564 7.09242 7.17632 7.20413 7.54659 7.60448 7.74072 7.97197 8.10025 8.22680 8.46345 8.57969 8.84947 8.90250 10.21700 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.001703 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.711874 B =16440.560251 C =17809.226283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.083 4.083 12 C -0.003 4.003 13 N -0.642 5.642 14 C 0.500 3.500 15 O -0.503 6.503 16 C 0.033 3.967 17 O -0.261 6.261 18 C 0.150 3.850 19 C -0.144 4.144 20 C -0.002 4.002 21 N 0.026 4.974 22 O -0.151 6.151 23 O -0.152 6.152 24 C -0.082 4.082 25 C -0.070 4.070 26 C -0.025 4.025 27 Cl -0.015 7.015 28 C -0.116 4.116 29 C -0.142 4.142 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.398 0.602 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 -21.670 5.764 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.095 4.095 13 N -0.287 5.287 14 C 0.284 3.716 15 O -0.377 6.377 16 C -0.045 4.045 17 O -0.172 6.172 18 C 0.101 3.899 19 C -0.164 4.164 20 C -0.085 4.085 21 N 0.547 4.453 22 O -0.368 6.368 23 O -0.369 6.369 24 C -0.102 4.102 25 C -0.090 4.090 26 C -0.053 4.053 27 Cl 0.015 6.985 28 C -0.136 4.136 29 C -0.162 4.162 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.185 0.815 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.111 0.889 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.815 -20.782 7.134 23.005 hybrid contribution -0.370 0.509 -0.654 0.908 sum -7.185 -20.273 6.480 22.463 Atomic orbital electron populations 1.69744 1.07315 1.28968 1.37618 1.25905 0.94977 1.01269 0.92477 0.86222 0.79802 0.79965 0.79830 1.18993 1.20383 1.19047 1.19495 0.94790 0.90207 1.44470 0.90529 1.17746 0.92257 0.92005 0.88028 1.20809 1.01322 0.94908 1.05582 1.20395 0.92705 0.97889 0.99283 1.17189 0.94300 0.85473 1.12507 1.42746 1.49059 1.21428 1.15457 1.19688 0.84078 0.84534 0.83299 1.90771 1.37717 1.69691 1.39497 1.22798 1.01555 0.95487 0.84707 1.86359 1.61011 1.33713 1.36079 1.18431 0.91764 0.87608 0.92136 1.21017 0.97356 0.95998 1.02063 1.20842 0.97902 0.97906 0.91834 1.43530 1.00154 1.00214 1.01355 1.94557 1.47153 1.11933 1.83160 1.94574 1.69174 1.61987 1.11157 1.20925 0.97901 1.01001 0.90339 1.20973 0.94210 0.93239 1.00553 1.20695 0.97701 0.95971 0.90903 1.98463 1.59161 1.84608 1.56287 1.20299 0.98352 0.93008 1.01974 1.21201 0.97321 0.95557 1.02151 0.90974 0.88481 0.87472 0.76831 0.88446 0.88307 0.81487 0.81797 0.81671 0.88935 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.59 10.60 55.55 0.59 -20.00 16 2 C 0.07 1.72 5.42 -17.33 -0.09 1.62 16 3 Si 0.92 18.64 29.56 -169.99 -5.03 13.61 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.46 -11.97 9.03 -37.85 -0.34 -12.31 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.21 -5.08 9.74 -39.26 -0.38 -5.47 16 11 C -0.08 -1.91 8.61 -39.79 -0.34 -2.25 16 12 C 0.00 -0.06 6.31 -83.57 -0.53 -0.59 16 13 N -0.64 -10.02 5.30 -9.74 -0.05 -10.07 16 14 C 0.50 7.81 7.74 -10.98 -0.08 7.72 16 15 O -0.50 -10.36 13.92 -14.35 -0.20 -10.56 16 16 C 0.03 0.33 5.22 36.01 0.19 0.52 16 17 O -0.26 -3.10 9.13 -39.41 -0.36 -3.46 16 18 C 0.15 1.40 6.68 -39.19 -0.26 1.13 16 19 C -0.14 -1.16 8.54 -39.44 -0.34 -1.49 16 20 C 0.00 -0.02 6.85 -79.97 -0.55 -0.56 16 21 N 0.03 0.27 4.45 33.95 0.15 0.42 16 22 O -0.15 -1.59 18.44 -29.46 -0.54 -2.14 16 23 O -0.15 -1.69 18.44 -29.46 -0.54 -2.23 16 24 C -0.08 -0.49 9.55 -39.57 -0.38 -0.87 16 25 C -0.07 -0.39 9.83 -39.57 -0.39 -0.78 16 26 C -0.02 -0.21 6.33 -39.36 -0.25 -0.45 16 27 Cl -0.01 -0.14 28.50 -51.86 -1.48 -1.62 16 28 C -0.12 -2.51 9.90 -39.79 -0.39 -2.91 16 29 C -0.14 -3.53 8.62 -39.26 -0.34 -3.87 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 31 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.11 2.44 6.22 -52.48 -0.33 2.12 16 33 H 0.40 4.46 8.82 -40.82 -0.36 4.10 16 34 H 0.10 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.10 0.72 7.65 -51.93 -0.40 0.32 16 36 H 0.17 1.09 5.85 -52.49 -0.31 0.79 16 37 H 0.16 0.65 7.60 -52.49 -0.40 0.25 16 38 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.13 3.41 6.13 -52.48 -0.32 3.09 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -31.90 373.86 -10.22 -42.13 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.33 Total: 6.77 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -5.07 Total: -18.49 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.69 Total: -29.65 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.65 Total: -18.39 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.48 Total: -1.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.90 -10.22 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075092225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.538 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds