Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99998 * 2 1 4 4 O 1.20827 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99656 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46923 * 175.71095 * 5 3 2 7 7 C 1.34468 * 126.10881 * 299.65833 * 6 5 3 8 8 S 1.71203 * 124.48054 * 0.02562 * 7 6 5 9 9 N 1.34185 * 111.03259 * 179.77478 * 7 6 5 10 10 C 1.46507 * 125.09261 * 180.28306 * 9 7 6 11 11 C 1.34837 * 109.81090 * 0.41549 * 9 7 6 12 12 O 1.21721 * 126.92451 * 179.87028 * 11 9 7 13 13 C 1.40003 * 126.10759 * 119.68022 * 6 5 3 14 14 C 1.35795 * 127.39100 * 359.95948 * 13 6 5 15 15 C 1.46721 * 120.00369 * 346.52375 * 14 13 6 16 16 C 1.39987 * 120.22893 * 301.01046 * 15 14 13 17 17 C 1.37749 * 119.88406 * 180.02562 * 16 15 14 18 18 C 1.38624 * 120.35610 * 0.02562 * 17 16 15 19 19 C 1.38087 * 120.47404 * 359.97438 * 18 17 16 20 20 C 1.38745 * 120.09649 * 359.72169 * 19 18 17 21 21 O 1.35529 * 120.17334 * 180.30075 * 20 19 18 22 22 C 1.34766 * 117.00121 * 354.59471 * 21 20 19 23 23 H 1.08003 * 120.00298 * 355.40858 * 22 21 20 24 24 C 1.38708 * 120.00160 * 175.41656 * 22 21 20 25 25 N 1.31519 * 119.99511 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00350 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46811 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47025 * 119.99624 * 26 24 22 29 29 H 1.48497 * 109.47074 * 239.99867 * 26 24 22 30 30 H 1.09005 * 109.47067 * 300.00120 * 1 2 3 31 31 H 1.09005 * 109.47096 * 59.99931 * 1 2 3 32 32 H 1.08997 * 109.47380 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47427 * 55.71004 * 5 3 2 34 34 H 1.09003 * 109.46973 * 295.71088 * 5 3 2 35 35 H 1.08995 * 109.46946 * 180.17408 * 10 9 7 36 36 H 1.08996 * 109.47138 * 300.17346 * 10 9 7 37 37 H 1.08999 * 109.47017 * 60.17739 * 10 9 7 38 38 H 1.07999 * 119.99667 * 166.52491 * 14 13 6 39 39 H 1.08003 * 120.05822 * 359.97438 * 16 15 14 40 40 H 1.07996 * 119.81868 * 180.02562 * 17 16 15 41 41 H 1.08002 * 119.76410 * 180.02562 * 18 17 16 42 42 H 1.07998 * 119.94727 * 179.97438 * 19 18 17 43 43 H 0.97000 * 119.99809 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6758 -0.1038 7 6 3.6946 3.5153 -1.1142 8 16 2.7714 3.0926 -2.4926 9 7 4.2225 4.7295 -0.8964 10 6 4.0932 5.8780 -1.7968 11 6 4.8924 4.7334 0.2738 12 8 5.4903 5.6698 0.7710 13 6 4.7496 3.3797 0.8318 14 6 5.2538 2.9131 2.0032 15 6 4.7769 1.6384 2.5512 16 6 3.4202 1.4623 2.8480 17 6 2.9803 0.2628 3.3628 18 6 3.8742 -0.7722 3.5895 19 6 5.2156 -0.6146 3.3020 20 6 5.6786 0.5833 2.7770 21 8 6.9939 0.7376 2.4887 22 6 7.8191 -0.2688 2.8385 23 1 7.4361 -1.1139 3.3914 24 6 9.1604 -0.2193 2.4887 25 7 9.6269 0.8100 1.8160 26 14 10.3041 -1.6145 2.9729 27 1 9.5389 -2.6455 3.7191 28 1 10.8905 -2.2207 1.7507 29 1 11.3922 -1.0863 3.8344 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.9592 0.7158 -0.8499 34 1 3.9529 0.8483 0.9251 35 1 4.6216 6.7324 -1.3740 36 1 4.5226 5.6291 -2.7672 37 1 3.0390 6.1270 -1.9189 38 1 6.0058 3.4804 2.5314 39 1 2.7198 2.2659 2.6745 40 1 1.9334 0.1279 3.5910 41 1 3.5189 -1.7089 3.9930 42 1 5.9047 -1.4265 3.4824 43 1 10.5648 0.8445 1.5710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075261163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -24.914551 kcal Electronic energy + Delta-G solvation = -33039.552821 eV Core-core repulsion = 28566.085352 eV Total energy + Delta-G solvation = -4473.467469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.69947 -40.36896 -39.63064 -38.08493 -37.09772 -36.45810 -35.67858 -33.06190 -32.61832 -31.14020 -29.50939 -28.74472 -28.03109 -26.61566 -25.81393 -25.44335 -22.83480 -21.99520 -21.40538 -21.09690 -20.22240 -18.43307 -18.06837 -17.82503 -17.36502 -16.90497 -16.61668 -16.49739 -16.25471 -15.80568 -15.18957 -15.14375 -15.01183 -14.64475 -14.39150 -14.12948 -14.01491 -13.86961 -13.56090 -13.49464 -13.11276 -12.89066 -12.82785 -12.68162 -12.32971 -12.02431 -12.01799 -11.58987 -11.43129 -11.23974 -11.22549 -11.05617 -10.86801 -10.73714 -10.66256 -10.45522 -10.32049 -9.81979 -9.22012 -9.06671 -8.46825 -7.84990 -7.66603 -7.43735 -6.82876 -4.40263 0.09560 1.40924 1.60335 1.86354 1.94120 2.18909 2.31073 2.49661 2.72909 2.93201 2.94083 2.96778 3.00756 3.65807 3.88804 4.05596 4.57526 4.67693 4.74401 4.76316 4.94793 4.97192 5.10442 5.18930 5.20947 5.22682 5.24945 5.32657 5.44655 5.48102 5.49846 5.53840 5.60438 5.77969 5.80295 6.05731 6.20317 6.30439 6.36686 6.50484 6.64037 6.66862 6.78444 6.91147 6.98340 7.29558 7.38889 7.58788 7.77635 8.60702 9.20332 10.32378 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.003849 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.689571 B = 7272.090963 C = 9052.519702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.351 6.351 3 C 0.463 3.537 4 O -0.484 6.484 5 C 0.115 3.885 6 N -0.471 5.471 7 C 0.533 3.467 8 S -0.561 6.561 9 N -0.533 5.533 10 C 0.089 3.911 11 C 0.557 3.443 12 O -0.463 6.463 13 C -0.059 4.059 14 C 0.092 3.908 15 C -0.205 4.205 16 C -0.053 4.053 17 C -0.211 4.211 18 C -0.049 4.049 19 C -0.225 4.225 20 C 0.171 3.829 21 O -0.152 6.152 22 C -0.396 4.396 23 H 0.100 0.900 24 C 0.045 3.955 25 N -0.842 5.842 26 Si 0.945 3.055 27 H -0.264 1.264 28 H -0.273 1.273 29 H -0.273 1.273 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -0.550 -0.044 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.267 6.267 3 C 0.302 3.698 4 O -0.370 6.370 5 C -0.007 4.007 6 N -0.172 5.172 7 C 0.183 3.817 8 S -0.425 6.425 9 N -0.256 5.256 10 C -0.052 4.052 11 C 0.346 3.654 12 O -0.335 6.335 13 C -0.157 4.157 14 C 0.066 3.934 15 C -0.207 4.207 16 C -0.071 4.071 17 C -0.230 4.230 18 C -0.068 4.068 19 C -0.244 4.244 20 C 0.113 3.887 21 O -0.053 6.053 22 C -0.471 4.471 23 H 0.117 0.883 24 C -0.162 4.162 25 N -0.474 5.474 26 Si 0.769 3.231 27 H -0.188 1.188 28 H -0.198 1.198 29 H -0.198 1.198 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.184 0.816 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.178 0.822 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.915 0.272 -0.882 10.954 hybrid contribution 0.782 -0.447 0.913 1.282 sum -10.133 -0.175 0.030 10.135 Atomic orbital electron populations 1.23239 0.76116 1.03488 1.02550 1.86458 1.23431 1.32449 1.84325 1.23300 0.91283 0.82129 0.73046 1.90711 1.66457 1.36011 1.43810 1.21710 0.89720 0.78870 1.10449 1.44416 1.45959 1.10465 1.16344 1.22603 0.85805 0.81885 0.91358 1.93147 1.45058 1.85907 1.18420 1.45875 1.46703 1.11328 1.21709 1.22032 1.04727 0.85084 0.93320 1.18479 0.78380 0.88318 0.80227 1.90914 1.39793 1.39725 1.63043 1.20363 1.06927 0.92366 0.96024 1.21894 0.90045 0.92726 0.88689 1.17768 0.93046 0.93655 1.16241 1.20909 0.92377 0.97253 0.96571 1.20535 0.99298 0.94224 1.08986 1.20996 0.92671 0.97802 0.95310 1.21216 0.96409 0.98632 1.08183 1.19341 0.84919 0.92095 0.92325 1.83892 1.11631 1.42477 1.67270 1.21520 0.88913 1.00453 1.36171 0.88281 1.25412 0.96683 0.98431 0.95718 1.70010 1.15968 1.28127 1.33274 0.85576 0.79505 0.79253 0.78790 1.18761 1.19778 1.19798 0.92077 0.91742 0.88124 0.85115 0.81645 0.88430 0.89219 0.89341 0.82182 0.86721 0.86827 0.86596 0.84589 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.35 -4.77 10.57 -39.25 -0.41 -5.19 16 3 C 0.46 7.20 6.54 36.01 0.24 7.43 16 4 O -0.48 -8.56 14.37 -18.75 -0.27 -8.83 16 5 C 0.11 1.78 5.63 -5.19 -0.03 1.76 16 6 N -0.47 -7.88 2.70 -115.09 -0.31 -8.19 16 7 C 0.53 9.17 6.84 -87.72 -0.60 8.57 16 8 S -0.56 -10.46 28.09 -107.50 -3.02 -13.48 16 9 N -0.53 -8.31 3.04 -126.15 -0.38 -8.69 16 10 C 0.09 1.03 10.51 59.85 0.63 1.66 16 11 C 0.56 9.35 8.10 -12.63 -0.10 9.25 16 12 O -0.46 -8.34 17.61 5.17 0.09 -8.25 16 13 C -0.06 -0.99 6.68 -81.40 -0.54 -1.53 16 14 C 0.09 1.54 9.25 -37.03 -0.34 1.20 16 15 C -0.21 -3.47 3.50 -104.92 -0.37 -3.84 16 16 C -0.05 -0.79 6.64 -39.11 -0.26 -1.05 16 17 C -0.21 -2.90 10.00 -39.62 -0.40 -3.30 16 18 C -0.05 -0.70 10.03 -39.49 -0.40 -1.09 16 19 C -0.23 -3.84 9.13 -39.45 -0.36 -4.20 16 20 C 0.17 3.29 6.44 -38.50 -0.25 3.04 16 21 O -0.15 -3.58 9.21 0.91 0.01 -3.57 16 22 C -0.40 -9.33 9.45 30.91 0.29 -9.04 16 23 H 0.10 2.13 5.27 -52.48 -0.28 1.85 16 24 C 0.05 1.08 5.49 -17.51 -0.10 0.99 16 25 N -0.84 -21.85 13.67 55.48 0.76 -21.09 16 26 Si 0.95 18.00 29.55 -169.99 -5.02 12.98 16 27 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 28 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 29 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.17 2.61 3.40 -51.93 -0.18 2.43 16 35 H 0.10 0.99 7.70 -51.93 -0.40 0.59 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.16 2.64 8.06 -52.49 -0.42 2.21 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.14 2.32 5.70 -52.49 -0.30 2.02 16 43 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -30.52 386.36 -8.77 -39.29 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.51 Total: 7.87 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.52 Total: 11.33 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.06 Total: -37.97 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.58 Total: -25.84 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.98 kcal Atomic # 16 Polarization: -10.46 SS G_CDS: -3.02 Total: -13.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.52 -8.77 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075261163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.378 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds