Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99998 * 2 1 4 4 O 1.20827 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99656 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46923 * 175.71095 * 5 3 2 7 7 C 1.34468 * 126.10881 * 299.65833 * 6 5 3 8 8 S 1.71203 * 124.48054 * 0.02562 * 7 6 5 9 9 N 1.34185 * 111.03259 * 179.77478 * 7 6 5 10 10 C 1.46507 * 125.09261 * 180.28306 * 9 7 6 11 11 C 1.34837 * 109.81090 * 0.41549 * 9 7 6 12 12 O 1.21721 * 126.92451 * 179.87028 * 11 9 7 13 13 C 1.40003 * 126.10759 * 119.68022 * 6 5 3 14 14 C 1.35795 * 127.39100 * 359.95948 * 13 6 5 15 15 C 1.46721 * 120.00369 * 346.52375 * 14 13 6 16 16 C 1.39987 * 120.22893 * 301.01046 * 15 14 13 17 17 C 1.37749 * 119.88406 * 180.02562 * 16 15 14 18 18 C 1.38624 * 120.35610 * 0.02562 * 17 16 15 19 19 C 1.38087 * 120.47404 * 359.97438 * 18 17 16 20 20 C 1.38745 * 120.09649 * 359.72169 * 19 18 17 21 21 O 1.35529 * 120.17334 * 180.30075 * 20 19 18 22 22 C 1.34766 * 117.00121 * 354.59471 * 21 20 19 23 23 H 1.08003 * 120.00298 * 355.40858 * 22 21 20 24 24 C 1.38708 * 120.00160 * 175.41656 * 22 21 20 25 25 N 1.31519 * 119.99511 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00350 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46811 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47025 * 119.99624 * 26 24 22 29 29 H 1.48497 * 109.47074 * 239.99867 * 26 24 22 30 30 H 1.09005 * 109.47067 * 300.00120 * 1 2 3 31 31 H 1.09005 * 109.47096 * 59.99931 * 1 2 3 32 32 H 1.08997 * 109.47380 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47427 * 55.71004 * 5 3 2 34 34 H 1.09003 * 109.46973 * 295.71088 * 5 3 2 35 35 H 1.08995 * 109.46946 * 180.17408 * 10 9 7 36 36 H 1.08996 * 109.47138 * 300.17346 * 10 9 7 37 37 H 1.08999 * 109.47017 * 60.17739 * 10 9 7 38 38 H 1.07999 * 119.99667 * 166.52491 * 14 13 6 39 39 H 1.08003 * 120.05822 * 359.97438 * 16 15 14 40 40 H 1.07996 * 119.81868 * 180.02562 * 17 16 15 41 41 H 1.08002 * 119.76410 * 180.02562 * 18 17 16 42 42 H 1.07998 * 119.94727 * 179.97438 * 19 18 17 43 43 H 0.97000 * 119.99809 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6758 -0.1038 7 6 3.6946 3.5153 -1.1142 8 16 2.7714 3.0926 -2.4926 9 7 4.2225 4.7295 -0.8964 10 6 4.0932 5.8780 -1.7968 11 6 4.8924 4.7334 0.2738 12 8 5.4903 5.6698 0.7710 13 6 4.7496 3.3797 0.8318 14 6 5.2538 2.9131 2.0032 15 6 4.7769 1.6384 2.5512 16 6 3.4202 1.4623 2.8480 17 6 2.9803 0.2628 3.3628 18 6 3.8742 -0.7722 3.5895 19 6 5.2156 -0.6146 3.3020 20 6 5.6786 0.5833 2.7770 21 8 6.9939 0.7376 2.4887 22 6 7.8191 -0.2688 2.8385 23 1 7.4361 -1.1139 3.3914 24 6 9.1604 -0.2193 2.4887 25 7 9.6269 0.8100 1.8160 26 14 10.3041 -1.6145 2.9729 27 1 9.5389 -2.6455 3.7191 28 1 10.8905 -2.2207 1.7507 29 1 11.3922 -1.0863 3.8344 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.9592 0.7158 -0.8499 34 1 3.9529 0.8483 0.9251 35 1 4.6216 6.7324 -1.3740 36 1 4.5226 5.6291 -2.7672 37 1 3.0390 6.1270 -1.9189 38 1 6.0058 3.4804 2.5314 39 1 2.7198 2.2659 2.6745 40 1 1.9334 0.1279 3.5910 41 1 3.5189 -1.7089 3.9930 42 1 5.9047 -1.4265 3.4824 43 1 10.5648 0.8445 1.5710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075261163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -40.657231 kcal Electronic energy + Delta-G solvation = -33040.235475 eV Core-core repulsion = 28566.085352 eV Total energy + Delta-G solvation = -4474.150122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.04763 -41.58230 -41.02521 -39.45884 -38.52999 -37.65427 -36.95406 -34.49423 -34.18826 -32.37813 -30.83650 -30.05560 -29.05891 -27.74801 -27.43199 -26.74135 -24.13248 -23.36245 -22.70597 -22.36918 -21.53680 -19.96512 -19.37970 -19.05413 -18.83082 -18.18287 -17.94189 -17.68966 -17.44652 -17.11769 -16.60185 -16.45616 -16.39316 -16.07619 -15.79592 -15.39202 -15.34574 -15.15377 -14.76429 -14.69508 -14.51189 -14.21052 -14.02720 -13.63420 -13.60640 -13.54330 -13.02738 -12.93919 -12.86385 -12.60641 -12.52002 -12.36667 -12.12051 -12.07660 -11.84851 -11.77829 -11.58099 -11.31237 -10.86148 -10.41319 -9.77363 -9.27332 -9.13400 -8.86493 -8.51742 -6.17540 -1.29235 0.09311 0.24484 0.52158 0.62419 0.87603 1.08315 1.22332 1.37447 1.39858 1.45890 1.56049 1.78141 2.14012 2.52422 2.71135 3.08432 3.24511 3.31731 3.57170 3.66202 3.84975 3.96056 3.99020 4.07021 4.22153 4.27615 4.30588 4.33567 4.35367 4.39010 4.47919 4.55826 4.61832 4.74012 4.74560 4.85177 5.01038 5.10661 5.17474 5.26950 5.35785 5.44525 5.55461 5.65238 5.93389 6.01300 6.04432 6.60588 6.93524 7.64618 8.68775 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.003849 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.689571 B = 7272.090963 C = 9052.519702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.351 6.351 3 C 0.469 3.531 4 O -0.507 6.507 5 C 0.110 3.890 6 N -0.470 5.470 7 C 0.536 3.464 8 S -0.591 6.591 9 N -0.528 5.528 10 C 0.081 3.919 11 C 0.558 3.442 12 O -0.476 6.476 13 C -0.060 4.060 14 C 0.089 3.911 15 C -0.199 4.199 16 C -0.055 4.055 17 C -0.186 4.186 18 C -0.037 4.037 19 C -0.234 4.234 20 C 0.151 3.849 21 O -0.204 6.204 22 C -0.409 4.409 23 H 0.112 0.888 24 C -0.012 4.012 25 N -0.907 5.907 26 Si 1.011 2.989 27 H -0.245 1.245 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 -2.096 1.009 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C 0.310 3.690 4 O -0.395 6.395 5 C -0.012 4.012 6 N -0.171 5.171 7 C 0.185 3.815 8 S -0.456 6.456 9 N -0.250 5.250 10 C -0.058 4.058 11 C 0.347 3.653 12 O -0.349 6.349 13 C -0.158 4.158 14 C 0.064 3.936 15 C -0.201 4.201 16 C -0.073 4.073 17 C -0.204 4.204 18 C -0.054 4.054 19 C -0.253 4.253 20 C 0.098 3.902 21 O -0.108 6.108 22 C -0.484 4.484 23 H 0.130 0.870 24 C -0.212 4.212 25 N -0.543 5.543 26 Si 0.831 3.169 27 H -0.168 1.168 28 H -0.199 1.199 29 H -0.200 1.200 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.176 0.824 39 H 0.141 0.859 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.809 -1.299 0.187 13.871 hybrid contribution 1.196 0.081 0.643 1.360 sum -12.612 -1.218 0.830 12.698 Atomic orbital electron populations 1.23583 0.74012 1.05889 1.02508 1.86450 1.25385 1.31083 1.83734 1.23123 0.90936 0.82413 0.72519 1.90705 1.66842 1.36864 1.45041 1.21805 0.90425 0.78302 1.10638 1.44504 1.45617 1.10868 1.16071 1.22540 0.85581 0.82385 0.91005 1.93170 1.46640 1.86349 1.19443 1.46054 1.45690 1.11656 1.21629 1.22366 1.05870 0.84278 0.93241 1.18452 0.78243 0.88079 0.80505 1.90908 1.40387 1.40125 1.63478 1.20410 1.06789 0.92651 0.95982 1.21981 0.89740 0.92950 0.88903 1.17945 0.93724 0.92936 1.15513 1.21070 0.91325 0.98345 0.96538 1.21017 1.00986 0.92901 1.05508 1.21401 0.91092 0.99408 0.93547 1.21374 0.97975 0.97769 1.08203 1.19785 0.84298 0.93638 0.92522 1.83879 1.13256 1.43388 1.70309 1.21903 0.89426 1.00745 1.36352 0.87035 1.26465 0.98222 1.00697 0.95821 1.70145 1.16049 1.30974 1.37147 0.84612 0.77356 0.76597 0.78326 1.16809 1.19935 1.19963 0.91374 0.92609 0.84517 0.84526 0.81797 0.86792 0.88204 0.88264 0.82390 0.85934 0.83255 0.82652 0.84893 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.35 -8.55 10.57 -51.40 -0.54 -9.10 16 3 C 0.47 13.70 6.54 71.24 0.47 14.17 16 4 O -0.51 -17.06 14.37 21.96 0.32 -16.74 16 5 C 0.11 3.31 5.63 85.63 0.48 3.80 16 6 N -0.47 -15.50 2.70 -518.02 -1.40 -16.90 16 7 C 0.54 18.14 6.84 179.34 1.23 19.37 16 8 S -0.59 -21.69 28.09 -56.49 -1.59 -23.28 16 9 N -0.53 -16.11 3.04 -671.20 -2.04 -18.15 16 10 C 0.08 1.79 10.51 127.77 1.34 3.14 16 11 C 0.56 18.64 8.10 86.56 0.70 19.34 16 12 O -0.48 -17.12 17.61 -4.42 -0.08 -17.20 16 13 C -0.06 -2.02 6.68 39.60 0.26 -1.76 16 14 C 0.09 3.05 9.25 23.92 0.22 3.27 16 15 C -0.20 -6.62 3.50 -20.06 -0.07 -6.69 16 16 C -0.05 -1.48 6.64 22.58 0.15 -1.33 16 17 C -0.19 -4.23 10.00 22.25 0.22 -4.01 16 18 C -0.04 -0.87 10.03 22.33 0.22 -0.65 16 19 C -0.23 -7.58 9.13 22.36 0.20 -7.38 16 20 C 0.15 5.83 6.44 22.97 0.15 5.97 16 21 O -0.20 -10.02 9.21 -19.66 -0.18 -10.20 16 22 C -0.41 -19.99 9.45 67.93 0.64 -19.35 16 23 H 0.11 4.86 5.27 -2.91 -0.02 4.85 16 24 C -0.01 -0.60 5.49 84.85 0.47 -0.14 16 25 N -0.91 -50.08 13.67 21.62 0.30 -49.78 16 26 Si 1.01 37.96 29.55 68.60 2.03 39.98 16 27 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 28 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 29 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 30 H 0.07 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 32 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 34 H 0.17 4.96 3.40 -2.39 -0.01 4.96 16 35 H 0.11 2.15 7.70 -2.39 -0.02 2.14 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.16 5.45 8.06 -2.91 -0.02 5.43 16 39 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.13 4.38 5.70 -2.91 -0.02 4.37 16 43 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -69.39 386.36 5.78 -63.61 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 1.08 Total: 28.22 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 7.89 Total: 29.53 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.14 Total: -84.83 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.49 Total: -53.24 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: -21.69 SS G_CDS: -1.59 Total: -23.28 kcal Total: -69.39 5.78 -63.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075261163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.953 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds