Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33706 * 122.21104 * 2 1 4 4 C 1.46935 * 124.66620 * 359.94628 * 3 2 1 5 5 O 1.21663 * 119.99774 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00511 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00365 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47030 * 180.02562 * 7 6 4 9 9 C 1.53349 * 109.41694 * 295.12891 * 8 7 6 10 10 C 1.53194 * 109.14721 * 178.67625 * 9 8 7 11 11 N 1.46924 * 108.89447 * 54.57940 * 10 9 8 12 12 C 1.36930 * 120.63300 * 126.34039 * 11 10 9 13 13 H 1.07996 * 120.00049 * 331.82927 * 12 11 10 14 14 C 1.38816 * 120.00324 * 151.82723 * 12 11 10 15 15 N 1.31624 * 119.99356 * 343.06571 * 14 12 11 16 16 Si 1.86793 * 120.00395 * 163.06593 * 14 12 11 17 17 H 1.48500 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47338 * 119.99948 * 16 14 12 19 19 H 1.48503 * 109.47085 * 239.99957 * 16 14 12 20 20 C 1.46929 * 118.73622 * 306.31812 * 11 10 9 21 21 C 1.53036 * 109.45564 * 175.00227 * 8 7 6 22 22 S 1.75484 * 110.66926 * 180.21131 * 3 2 1 23 23 C 1.76018 * 91.62115 * 359.69927 * 22 3 2 24 24 C 1.39880 * 130.51374 * 180.02562 * 23 22 3 25 25 C 1.37388 * 120.39079 * 180.25804 * 24 23 22 26 26 C 1.38917 * 120.22340 * 0.02618 * 25 24 23 27 27 C 1.37170 * 120.52061 * 359.97438 * 26 25 24 28 28 F 1.35102 * 119.83742 * 180.02562 * 27 26 25 29 29 C 1.40017 * 109.53341 * 0.29676 * 23 22 3 30 30 H 1.08994 * 109.47601 * 90.02698 * 1 2 3 31 31 H 1.09002 * 109.46811 * 210.02348 * 1 2 3 32 32 H 1.09005 * 109.47546 * 330.02016 * 1 2 3 33 33 H 0.96997 * 119.99597 * 0.02562 * 6 4 3 34 34 H 1.08994 * 109.46871 * 60.00166 * 7 6 4 35 35 H 1.09000 * 109.46959 * 300.00074 * 7 6 4 36 36 H 1.09000 * 109.45980 * 55.02905 * 8 7 6 37 37 H 1.08999 * 109.68685 * 58.71306 * 9 8 7 38 38 H 1.08997 * 109.47481 * 298.51196 * 9 8 7 39 39 H 1.08999 * 109.58554 * 294.71486 * 10 9 8 40 40 H 1.09001 * 109.58356 * 174.43691 * 10 9 8 41 41 H 0.96997 * 119.99488 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.58736 * 173.39352 * 20 11 10 43 43 H 1.08995 * 109.58640 * 293.68128 * 20 11 10 44 44 H 1.08993 * 109.50017 * 61.43810 * 21 8 7 45 45 H 1.08996 * 109.50185 * 301.33457 * 21 8 7 46 46 H 1.08007 * 119.80098 * 0.28371 * 24 23 22 47 47 H 1.08003 * 119.88735 * 180.02562 * 25 24 23 48 48 H 1.08008 * 119.74152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2196 1.1313 0.0000 4 6 1.6426 2.4826 -0.0011 5 8 0.4347 2.6282 -0.0026 6 7 2.4513 3.5608 -0.0005 7 6 1.8760 4.9081 -0.0022 8 6 3.0023 5.9436 -0.0017 9 6 3.7918 5.8375 1.3087 10 6 4.9377 6.8540 1.2886 11 7 4.3850 8.1889 1.0216 12 6 4.6555 9.2366 1.8607 13 1 4.8619 9.0529 2.9047 14 6 4.6643 10.5349 1.3695 15 7 4.7473 10.7474 0.0732 16 14 4.5583 11.9803 2.5481 17 1 4.4735 11.4767 3.9425 18 1 5.7678 12.8290 2.4005 19 1 3.3487 12.7840 2.2381 20 6 3.5370 8.3783 -0.1632 21 6 2.4048 7.3467 -0.1292 22 16 3.9390 0.7802 -0.0061 23 6 3.6358 -0.9537 0.0007 24 6 4.5268 -2.0320 0.0009 25 6 4.0559 -3.3227 0.0015 26 6 2.6886 -3.5682 0.0014 27 6 1.7941 -2.5283 0.0012 28 9 0.4673 -2.7829 0.0017 29 6 2.2553 -1.1875 0.0004 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 3.4143 3.4446 0.0003 34 1 1.2594 5.0409 0.8867 35 1 1.2621 5.0398 -0.8932 36 1 3.6693 5.7551 -0.8430 37 1 4.1993 4.8318 1.4114 38 1 3.1312 6.0505 2.1491 39 1 5.6476 6.5889 0.5051 40 1 5.4429 6.8542 2.2545 41 1 4.7538 11.6546 -0.2700 42 1 3.1157 9.3835 -0.1541 43 1 4.1331 8.2400 -1.0651 44 1 1.7573 7.5454 0.7247 45 1 1.8246 7.4129 -1.0495 46 1 5.5912 -1.8488 0.0010 47 1 4.7511 -4.1492 0.0021 48 1 2.3270 -4.5859 0.0023 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076042128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = -24.368214 kcal Electronic energy + Delta-G solvation = -30989.901746 eV Core-core repulsion = 26664.663852 eV Total energy + Delta-G solvation = -4325.237894 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.136 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -49.43225 -40.46254 -39.59604 -37.90545 -36.25118 -35.01290 -32.95943 -31.28512 -30.94658 -30.35967 -29.79693 -28.75472 -26.79182 -24.61210 -23.95884 -23.37853 -22.28767 -21.47442 -20.97821 -19.92934 -19.19987 -18.93055 -17.52096 -16.96013 -16.74806 -16.50179 -16.24566 -15.96132 -15.51206 -15.36957 -15.00391 -14.83753 -14.33563 -14.17428 -13.91423 -13.62137 -13.56669 -13.46060 -13.29597 -13.17649 -12.99663 -12.90284 -12.39600 -12.35691 -12.13604 -11.92253 -11.72261 -11.41187 -11.35814 -11.24354 -11.00348 -10.74843 -10.53539 -10.27448 -10.21405 -10.07464 -9.94395 -9.88495 -9.58110 -9.46771 -9.26402 -9.02157 -8.48341 -8.09879 -6.68277 -5.80199 -3.22557 -0.21420 0.49553 0.90638 1.35829 1.44090 2.83595 2.95353 3.04007 3.36317 3.44499 3.46607 3.66042 4.05764 4.20891 4.31141 4.48757 4.59491 4.65393 4.92377 4.99832 5.06620 5.14405 5.19133 5.33491 5.34286 5.39567 5.44039 5.51615 5.56531 5.57843 5.70209 5.80854 5.85665 5.90634 6.00588 6.04431 6.14243 6.23092 6.29374 6.35547 6.42158 6.57517 6.65538 6.73057 6.78620 6.95426 7.29821 7.36737 7.64540 7.79027 7.98572 8.44257 9.20466 9.83884 10.40535 11.28388 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.001719 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.624389 B =16286.998299 C =17080.690793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.001 4.001 3 C -0.232 4.232 4 C 0.586 3.414 5 O -0.523 6.523 6 N -0.716 5.716 7 C 0.124 3.876 8 C -0.091 4.091 9 C -0.128 4.128 10 C 0.145 3.855 11 N -0.592 5.592 12 C -0.251 4.251 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.171 3.829 21 C -0.132 4.132 22 S 0.143 5.857 23 C -0.106 4.106 24 C -0.097 4.097 25 C -0.066 4.066 26 C -0.160 4.160 27 C 0.151 3.849 28 F -0.127 7.127 29 C -0.116 4.116 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.088 0.912 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.138 0.862 47 H 0.144 0.856 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -30.105 -2.265 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.015 4.015 3 C -0.350 4.350 4 C 0.371 3.629 5 O -0.401 6.401 6 N -0.367 5.367 7 C 0.001 3.999 8 C -0.110 4.110 9 C -0.168 4.168 10 C 0.019 3.981 11 N -0.315 5.315 12 C -0.381 4.381 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.216 1.216 20 C 0.045 3.955 21 C -0.172 4.172 22 S 0.412 5.588 23 C -0.222 4.222 24 C -0.119 4.119 25 C -0.087 4.087 26 C -0.181 4.181 27 C 0.129 3.871 28 F -0.105 7.105 29 C -0.125 4.125 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.156 0.844 47 H 0.161 0.839 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.143 -28.742 -2.343 28.917 hybrid contribution -0.897 -0.231 0.485 1.045 sum -3.040 -28.973 -1.858 29.191 Atomic orbital electron populations 1.21063 0.88093 1.04982 1.03714 1.18934 0.98301 0.89241 0.94998 1.23512 0.97222 0.97593 1.16705 1.16940 0.86412 0.82547 0.76978 1.90766 1.13531 1.85640 1.50180 1.45991 1.09818 1.06406 1.74508 1.21678 0.96688 0.79188 1.02338 1.21387 0.95728 0.94990 0.98887 1.22144 0.99358 0.98489 0.96762 1.20881 0.92586 0.86165 0.98492 1.44052 1.54603 1.04551 1.28286 1.19221 1.43231 0.85380 0.90238 0.91703 1.25052 1.00868 0.98063 0.95753 1.70040 1.53620 1.19852 1.11242 0.86235 0.77319 0.82743 0.80556 1.20267 1.21750 1.21554 1.20771 0.88936 0.97399 0.88364 1.22170 1.00184 0.94333 1.00497 1.84242 1.02578 0.95707 1.76239 1.22818 0.95592 0.98637 1.05199 1.20556 0.99235 0.90508 1.01639 1.20943 0.94560 0.96533 0.96710 1.20953 0.93332 0.98785 1.05028 1.17569 0.77657 0.91468 1.00398 1.91500 1.31224 1.94550 1.93259 1.18026 0.92657 0.92620 1.09186 0.90235 0.90983 0.87879 0.76682 0.91148 0.91341 0.91237 0.93557 0.92045 0.96592 0.92855 0.93690 0.89365 0.96392 0.92304 0.92975 0.84434 0.83851 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.93 36.00 0.32 -1.03 16 2 C 0.00 -0.01 5.86 -105.42 -0.62 -0.63 16 3 C -0.23 -2.77 6.31 -37.65 -0.24 -3.01 16 4 C 0.59 8.07 7.77 -12.74 -0.10 7.97 16 5 O -0.52 -8.49 13.90 5.22 0.07 -8.42 16 6 N -0.72 -9.13 5.27 -61.54 -0.32 -9.45 16 7 C 0.12 1.73 5.07 -4.04 -0.02 1.71 16 8 C -0.09 -1.41 2.19 -90.42 -0.20 -1.61 16 9 C -0.13 -2.08 5.27 -26.45 -0.14 -2.22 16 10 C 0.15 2.92 6.50 -3.71 -0.02 2.90 16 11 N -0.59 -14.50 2.99 -172.31 -0.52 -15.01 16 12 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 13 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 15 N -0.90 -25.98 11.20 55.49 0.62 -25.36 16 16 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.17 3.96 5.30 -3.70 -0.02 3.94 16 21 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 22 S 0.14 1.34 22.26 -107.50 -2.39 -1.05 16 23 C -0.11 -0.96 6.50 -38.30 -0.25 -1.21 16 24 C -0.10 -0.62 10.06 -39.28 -0.40 -1.02 16 25 C -0.07 -0.33 10.03 -39.64 -0.40 -0.73 16 26 C -0.16 -1.00 9.96 -39.72 -0.40 -1.39 16 27 C 0.15 1.35 7.34 -38.61 -0.28 1.06 16 28 F -0.13 -1.20 14.89 2.25 0.03 -1.17 16 29 C -0.12 -1.19 5.85 -107.07 -0.63 -1.82 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.72 6.25 -51.93 -0.32 0.40 16 32 H 0.10 1.33 5.73 -51.93 -0.30 1.03 16 33 H 0.40 4.45 6.70 -40.82 -0.27 4.18 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 47 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 48 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -31.28 397.69 -11.91 -43.19 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.62 Total: 1.35 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.75 Total: -6.63 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.22 Total: -49.82 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.03 Total: -1.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.39 Total: -1.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.28 -11.91 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076042128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.822 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds