Wall clock time and date at job start Tue Mar 31 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12930 * 2 1 4 4 C 1.39875 * 107.92126 * 180.14346 * 3 2 1 5 5 C 1.50697 * 125.90016 * 179.86401 * 4 3 2 6 6 H 1.09000 * 109.50292 * 154.79897 * 5 4 3 7 7 C 1.53113 * 109.50391 * 34.71677 * 5 4 3 8 8 C 1.53125 * 109.16391 * 182.40604 * 7 5 4 9 9 C 1.53039 * 109.27667 * 57.65183 * 8 7 5 10 10 N 1.46843 * 109.52633 * 300.82500 * 9 8 7 11 11 C 1.46897 * 111.00444 * 185.83800 * 10 9 8 12 12 C 1.50699 * 109.46835 * 66.04536 * 11 10 9 13 13 C 1.38118 * 120.02593 * 260.00043 * 12 11 10 14 14 C 1.38389 * 120.05206 * 179.97438 * 13 12 11 15 15 Cl 1.73599 * 119.94133 * 179.97438 * 14 13 12 16 16 C 1.38432 * 120.11661 * 359.95859 * 14 13 12 17 17 C 1.38065 * 120.05097 * 0.27860 * 16 14 13 18 18 C 1.38851 * 120.03021 * 79.97997 * 12 11 10 19 19 O 1.35763 * 120.05694 * 0.02562 * 18 12 11 20 20 C 1.34817 * 117.00367 * 174.16553 * 19 18 12 21 21 H 1.08002 * 120.00324 * 5.07257 * 20 19 18 22 22 C 1.38648 * 120.00290 * 185.06288 * 20 19 18 23 23 N 1.31558 * 120.00081 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00194 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47324 * 120.00257 * 24 22 20 27 27 H 1.48508 * 109.47181 * 240.00157 * 24 22 20 28 28 C 1.46855 * 111.19894 * 61.73867 * 10 9 8 29 29 N 1.30839 * 108.19887 * 359.60302 * 4 3 2 30 30 N 1.34949 * 126.12333 * 179.70165 * 2 1 3 31 31 H 0.97003 * 126.04214 * 0.02562 * 30 2 1 32 32 H 1.09005 * 109.46982 * 270.26816 * 1 2 3 33 33 H 1.08995 * 109.46777 * 30.26811 * 1 2 3 34 34 H 1.08995 * 109.47087 * 150.26907 * 1 2 3 35 35 H 1.07993 * 126.04194 * 0.02580 * 3 2 1 36 36 H 1.08997 * 109.52594 * 62.49787 * 7 5 4 37 37 H 1.09006 * 109.52618 * 302.31016 * 7 5 4 38 38 H 1.09000 * 109.50130 * 297.71710 * 8 7 5 39 39 H 1.08994 * 109.50640 * 177.59674 * 8 7 5 40 40 H 1.08999 * 109.46307 * 180.80535 * 9 8 7 41 41 H 1.09006 * 109.46248 * 60.83875 * 9 8 7 42 42 H 1.08997 * 109.46898 * 306.04995 * 11 10 9 43 43 H 1.08995 * 109.47647 * 186.04306 * 11 10 9 44 44 H 1.07997 * 119.97589 * 359.97438 * 13 12 11 45 45 H 1.08001 * 119.97725 * 179.97438 * 16 14 13 46 46 H 1.08006 * 120.02686 * 179.72058 * 17 16 14 47 47 H 0.96996 * 120.00510 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.45952 * 58.27794 * 28 10 9 49 49 H 1.08994 * 109.46223 * 178.24200 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6336 0.6558 -0.0033 5 6 4.8544 1.5393 -0.0074 6 1 5.6954 0.9999 0.4282 7 6 4.5753 2.8007 0.8144 8 6 5.7985 3.7199 0.7554 9 6 6.1087 4.0552 -0.7052 10 7 6.3690 2.8159 -1.4487 11 6 6.8055 3.1068 -2.8208 12 6 8.1469 3.7927 -2.7863 13 6 8.2256 5.1644 -2.9266 14 6 9.4571 5.7949 -2.8945 15 17 9.5527 7.5192 -3.0719 16 6 10.6129 5.0530 -2.7209 17 6 10.5399 3.6810 -2.5851 18 6 9.3048 3.0462 -2.6130 19 8 9.2302 1.6977 -2.4749 20 6 10.3956 1.0213 -2.4317 21 1 11.3321 1.5591 -2.4233 22 6 10.3920 -0.3648 -2.3979 23 7 9.2512 -1.0200 -2.4085 24 14 12.0067 -1.3018 -2.3374 25 1 13.1377 -0.3395 -2.3351 26 1 12.0549 -2.1259 -1.1029 27 1 12.1114 -2.1851 -3.5266 28 6 5.1918 1.9378 -1.4459 29 7 3.6334 -0.6525 0.0033 30 7 2.3026 -1.0900 0.0057 31 1 2.0055 -2.0134 0.0101 32 1 -0.3633 0.0048 1.0277 33 1 -0.3633 0.8875 -0.5180 34 1 -0.3633 -0.8923 -0.5096 35 1 1.9742 2.1210 0.0004 36 1 4.3769 2.5244 1.8499 37 1 3.7096 3.3197 0.4026 38 1 6.6549 3.2151 1.2026 39 1 5.5901 4.6388 1.3034 40 1 6.9877 4.6980 -0.7516 41 1 5.2572 4.5722 -1.1479 42 1 6.0768 3.7580 -3.3035 43 1 6.8879 2.1755 -3.3810 44 1 7.3253 5.7456 -3.0615 45 1 11.5728 5.5473 -2.6966 46 1 11.4423 3.1021 -2.4542 47 1 9.2486 -1.9897 -2.3853 48 1 4.3447 2.4647 -1.8851 49 1 5.4051 1.0428 -2.0302 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076059690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:29 Heat of formation + Delta-G solvation = 39.150305 kcal Electronic energy + Delta-G solvation = -31996.073947 eV Core-core repulsion = 27756.892589 eV Total energy + Delta-G solvation = -4239.181358 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.145 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.28116 -41.07232 -39.70668 -38.36961 -36.99659 -35.46689 -34.23789 -33.62622 -32.43274 -32.07680 -30.49958 -30.33655 -27.89744 -27.44149 -27.06538 -24.74244 -24.05003 -23.33332 -22.21078 -21.62958 -20.95046 -20.06642 -19.83831 -18.65132 -18.19884 -16.99626 -16.89444 -16.71167 -16.30776 -16.06172 -15.69933 -15.47097 -15.39817 -15.24100 -15.07167 -14.72023 -14.64719 -14.49585 -14.10960 -13.81794 -13.75562 -13.70483 -13.58694 -13.46332 -13.31540 -13.08345 -12.88652 -12.81838 -12.52129 -12.40240 -12.21582 -12.10259 -11.83259 -11.80107 -11.71705 -11.49943 -11.43313 -11.25319 -11.09200 -10.72713 -10.25419 -9.78737 -9.52788 -9.04515 -8.84675 -8.41813 -6.07548 0.43634 0.56156 0.94091 1.35492 1.39877 1.42605 1.52584 1.78652 1.98511 2.18266 2.68690 3.05065 3.27497 3.51577 3.66229 3.74181 3.86855 3.94790 4.01512 4.03917 4.21157 4.25207 4.32429 4.36654 4.39744 4.49689 4.57279 4.62503 4.68194 4.70947 4.77965 4.79291 4.82796 4.86176 4.90717 5.02417 5.05955 5.12662 5.13067 5.14638 5.15895 5.31236 5.33682 5.41524 5.47717 5.52153 5.66225 5.70035 5.98371 6.03852 6.23992 6.38126 6.49083 6.77787 7.02035 7.83267 8.78834 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.006806 B = 0.003179 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4113.208260 B = 8806.068956 C =12301.188800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.093 3.907 3 C -0.280 4.280 4 C 0.080 3.920 5 C -0.001 4.001 6 H 0.051 0.949 7 C -0.093 4.093 8 C -0.112 4.112 9 C 0.057 3.943 10 N -0.545 5.545 11 C 0.127 3.873 12 C -0.145 4.145 13 C -0.050 4.050 14 C -0.114 4.114 15 Cl -0.077 7.077 16 C -0.057 4.057 17 C -0.238 4.238 18 C 0.144 3.856 19 O -0.196 6.196 20 C -0.411 4.411 21 H 0.100 0.900 22 C -0.015 4.015 23 N -0.906 5.906 24 Si 1.009 2.991 25 H -0.250 1.250 26 H -0.273 1.273 27 H -0.271 1.271 28 C 0.089 3.911 29 N -0.345 5.345 30 N -0.476 5.476 31 H 0.446 0.554 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.167 0.833 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.127 0.873 47 H 0.268 0.732 48 H 0.049 0.951 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 9.538 4.469 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.309 4.309 4 C -0.086 4.086 5 C -0.022 4.022 6 H 0.070 0.930 7 C -0.131 4.131 8 C -0.150 4.150 9 C -0.071 4.071 10 N -0.270 5.270 11 C 0.000 4.000 12 C -0.147 4.147 13 C -0.069 4.069 14 C -0.141 4.141 15 Cl -0.048 7.048 16 C -0.075 4.075 17 C -0.257 4.257 18 C 0.090 3.910 19 O -0.100 6.100 20 C -0.487 4.487 21 H 0.118 0.882 22 C -0.214 4.214 23 N -0.543 5.543 24 Si 0.829 3.171 25 H -0.173 1.173 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.040 4.040 29 N -0.169 5.169 30 N -0.186 5.186 31 H 0.291 0.709 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.185 0.815 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.167 0.833 45 H 0.161 0.839 46 H 0.145 0.855 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.902 8.012 4.717 17.564 hybrid contribution 0.081 -0.496 -0.532 0.732 sum -14.821 7.516 4.185 17.137 Atomic orbital electron populations 1.20610 0.83745 1.05370 1.04802 1.21837 0.96439 0.86778 0.98600 1.21380 0.90364 1.00613 1.18574 1.22326 0.96464 0.91116 0.98697 1.19444 0.91830 0.94723 0.96173 0.93031 1.21509 0.98614 0.93354 0.99600 1.21581 0.97583 1.00282 0.95562 1.22157 1.00239 0.90320 0.94342 1.61627 1.34173 1.16732 1.14487 1.20477 0.92078 0.98146 0.89285 1.18915 0.93073 0.92639 1.10100 1.20655 0.96922 0.91826 0.97488 1.20431 0.94781 0.84318 1.14613 1.98295 1.98690 1.11120 1.96712 1.20851 0.98044 0.92122 0.96521 1.21185 0.97633 0.95169 1.11755 1.19693 0.94149 0.84830 0.92278 1.84042 1.32982 1.14067 1.78934 1.21818 0.84434 0.89696 1.52789 0.88235 1.26412 1.02530 0.96423 0.96020 1.70221 1.27718 1.08378 1.47987 0.84657 0.76016 0.78121 0.78265 1.17333 1.19883 1.19584 1.21723 0.90929 0.95720 0.95623 1.77390 0.98340 1.14018 1.27111 1.46372 1.03266 1.09283 1.59664 0.70870 0.88513 0.88093 0.89658 0.81505 0.91031 0.89407 0.93589 0.88405 0.91329 0.93159 0.92319 0.93463 0.83289 0.83860 0.85506 0.92271 0.93261 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.43 71.24 0.74 -0.02 16 2 C 0.09 1.82 7.21 41.41 0.30 2.12 16 3 C -0.28 -6.56 9.88 21.99 0.22 -6.34 16 4 C 0.08 2.53 6.14 43.10 0.26 2.80 16 5 C 0.00 -0.02 2.81 -11.49 -0.03 -0.06 16 6 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 7 C -0.09 -2.27 4.92 30.67 0.15 -2.11 16 8 C -0.11 -2.90 6.09 30.65 0.19 -2.71 16 9 C 0.06 1.64 5.26 86.33 0.45 2.10 16 10 N -0.55 -20.36 4.65 -900.94 -4.19 -24.55 16 11 C 0.13 4.90 4.76 85.56 0.41 5.30 16 12 C -0.15 -5.81 4.60 -19.75 -0.09 -5.90 16 13 C -0.05 -1.63 8.35 22.28 0.19 -1.44 16 14 C -0.11 -3.68 6.32 22.35 0.14 -3.54 16 15 Cl -0.08 -2.03 28.95 -2.72 -0.08 -2.11 16 16 C -0.06 -1.96 9.82 22.27 0.22 -1.74 16 17 C -0.24 -10.10 9.17 22.39 0.21 -9.89 16 18 C 0.14 6.86 6.62 22.58 0.15 7.00 16 19 O -0.20 -11.35 8.99 -22.75 -0.20 -11.55 16 20 C -0.41 -23.51 9.49 67.92 0.64 -22.86 16 21 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 22 C -0.01 -0.84 5.49 84.83 0.47 -0.38 16 23 N -0.91 -55.98 13.67 21.61 0.30 -55.69 16 24 Si 1.01 43.48 29.55 68.60 2.03 45.51 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.09 3.16 4.72 86.32 0.41 3.57 16 29 N -0.35 -12.08 12.70 -47.38 -0.60 -12.68 16 30 N -0.48 -11.56 7.36 -48.00 -0.35 -11.91 16 31 H 0.45 7.88 8.96 -213.33 -1.91 5.97 16 32 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.17 2.96 7.36 -2.91 -0.02 2.94 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.71 7.19 -2.38 -0.02 1.70 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.12 6.31 -2.39 -0.02 2.10 16 41 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 42 H 0.06 1.85 7.98 -2.39 -0.02 1.83 16 43 H 0.05 2.18 7.70 -2.39 -0.02 2.16 16 44 H 0.15 3.96 8.04 -2.91 -0.02 3.94 16 45 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 46 H 0.13 5.48 5.64 -2.91 -0.02 5.46 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.04 1.55 8.01 -2.39 -0.02 1.53 16 Total: -1.00 -75.63 411.31 0.99 -74.63 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.93 Total: 32.47 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 5.02 Total: -34.11 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -4.84 Total: -104.83 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.20 Total: -11.55 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -75.63 0.99 -74.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076059690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.785 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds