Wall clock time and date at job start Tue Mar 31 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35313 * 126.12620 * 2 1 4 4 C 1.39870 * 107.92030 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.90263 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.50370 * 205.07958 * 5 4 3 7 7 C 1.53121 * 109.49954 * 325.19756 * 5 4 3 8 8 C 1.53115 * 109.16022 * 177.59607 * 7 5 4 9 9 C 1.53037 * 109.27931 * 302.34388 * 8 7 5 10 10 N 1.46849 * 109.52260 * 59.17749 * 9 8 7 11 11 C 1.46897 * 111.00207 * 174.16259 * 10 9 8 12 12 C 1.50700 * 109.46922 * 294.21210 * 11 10 9 13 13 C 1.38114 * 120.02670 * 259.99413 * 12 11 10 14 14 C 1.38393 * 120.05313 * 179.97438 * 13 12 11 15 15 Cl 1.73600 * 119.94100 * 180.02562 * 14 13 12 16 16 C 1.38429 * 120.11389 * 0.02662 * 14 13 12 17 17 C 1.38068 * 120.05729 * 359.97438 * 16 14 13 18 18 C 1.38855 * 120.02695 * 79.72721 * 12 11 10 19 19 O 1.35756 * 120.05829 * 359.97438 * 18 12 11 20 20 C 1.34829 * 117.00252 * 174.12867 * 19 18 12 21 21 H 1.08000 * 119.99761 * 5.08220 * 20 19 18 22 22 C 1.38646 * 119.99922 * 185.07677 * 20 19 18 23 23 N 1.31558 * 120.00527 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46950 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47338 * 120.00134 * 24 22 20 27 27 H 1.48502 * 109.47251 * 240.00131 * 24 22 20 28 28 C 1.46849 * 111.19883 * 298.26272 * 10 9 8 29 29 N 1.30844 * 108.20432 * 359.97438 * 4 3 2 30 30 N 1.34948 * 126.12263 * 179.68791 * 2 1 3 31 31 H 0.97004 * 126.04170 * 0.04307 * 30 2 1 32 32 H 1.09004 * 109.47096 * 90.00197 * 1 2 3 33 33 H 1.08996 * 109.46812 * 329.99720 * 1 2 3 34 34 H 1.08996 * 109.47102 * 209.99968 * 1 2 3 35 35 H 1.07994 * 126.03929 * 359.94640 * 3 2 1 36 36 H 1.09002 * 109.52189 * 297.50109 * 7 5 4 37 37 H 1.08995 * 109.52286 * 57.68884 * 7 5 4 38 38 H 1.08995 * 109.50416 * 182.40531 * 8 7 5 39 39 H 1.09005 * 109.50363 * 62.28341 * 8 7 5 40 40 H 1.08999 * 109.46252 * 299.16524 * 9 8 7 41 41 H 1.08994 * 109.45596 * 179.18700 * 9 8 7 42 42 H 1.09003 * 109.47046 * 54.20697 * 11 10 9 43 43 H 1.09001 * 109.47354 * 174.21311 * 11 10 9 44 44 H 1.07996 * 119.97420 * 0.02562 * 13 12 11 45 45 H 1.08005 * 119.97462 * 180.02562 * 16 14 13 46 46 H 1.08002 * 120.03132 * 179.97438 * 17 16 14 47 47 H 0.96997 * 120.00399 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.46005 * 301.72143 * 28 10 9 49 49 H 1.09000 * 109.45105 * 181.75528 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0006 5 6 4.8544 1.5394 0.0013 6 1 5.6949 0.9990 -0.4338 7 6 4.5740 2.7994 -0.8224 8 6 5.7973 3.7186 -0.7669 9 6 6.1095 4.0567 0.6927 10 7 6.3708 2.8187 1.4380 11 6 6.8093 3.1122 2.8090 12 6 8.1478 3.8037 2.7711 13 6 9.3033 3.0865 3.0117 14 6 10.5328 3.7209 2.9765 15 17 11.9834 2.8164 3.2788 16 6 10.6078 5.0753 2.7007 17 6 9.4556 5.7968 2.4594 18 6 8.2207 5.1613 2.4886 19 8 7.0869 5.8672 2.2458 20 6 7.2159 7.2012 2.0991 21 1 8.1976 7.6515 2.0941 22 6 6.0884 7.9950 1.9544 23 7 4.8926 7.4467 1.9608 24 14 6.2672 9.8432 1.7503 25 1 7.7067 10.2072 1.7772 26 1 5.6756 10.2575 0.4528 27 1 5.5616 10.5343 2.8592 28 6 5.1938 1.9406 1.4386 29 7 3.6334 -0.6525 0.0015 30 7 2.3026 -1.0900 0.0059 31 1 2.0055 -2.0134 0.0104 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 0.8899 0.5139 34 1 -0.3633 -0.8900 0.5138 35 1 1.9740 2.1210 -0.0008 36 1 4.3741 2.5211 -1.8572 37 1 3.7089 3.3189 -0.4104 38 1 5.5880 4.6364 -1.3162 39 1 6.6531 3.2130 -1.2144 40 1 5.2587 4.5744 1.1355 41 1 6.9887 4.6994 0.7364 42 1 6.0790 3.7606 3.2931 43 1 6.8970 2.1815 3.3696 44 1 9.2474 2.0296 3.2268 45 1 11.5685 5.5680 2.6734 46 1 9.5146 6.8536 2.2446 47 1 4.1037 8.0021 1.8599 48 1 4.3473 2.4683 1.8780 49 1 5.4081 1.0467 2.0243 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076059693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:33 Heat of formation + Delta-G solvation = 45.115933 kcal Electronic energy + Delta-G solvation = -32240.114750 eV Core-core repulsion = 28001.192081 eV Total energy + Delta-G solvation = -4238.922669 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.29203 -41.25842 -39.53762 -38.41469 -36.99474 -35.46868 -34.20183 -33.63939 -32.43022 -32.04970 -30.61910 -30.19008 -27.92637 -27.52643 -26.96175 -24.79463 -24.00455 -23.29321 -22.18882 -21.63780 -20.90017 -20.07977 -19.83197 -18.68066 -18.19337 -17.14819 -16.93070 -16.71478 -16.22779 -16.09748 -15.71527 -15.56270 -15.34680 -15.17231 -14.95681 -14.78567 -14.63709 -14.46591 -14.11241 -13.82661 -13.79104 -13.71049 -13.59418 -13.43242 -13.26601 -12.98415 -12.84332 -12.74287 -12.60511 -12.37819 -12.18873 -12.09990 -11.87045 -11.81910 -11.72425 -11.48211 -11.29830 -11.20839 -11.12715 -10.65187 -10.23023 -9.79781 -9.54472 -9.20708 -8.84610 -8.40277 -6.04979 0.45156 0.54331 0.90201 1.39274 1.40982 1.44546 1.54436 1.74963 1.96866 2.19481 2.69283 3.06731 3.26481 3.45707 3.62619 3.73433 3.90042 3.96759 4.01579 4.03945 4.23308 4.31230 4.32719 4.35024 4.45063 4.53610 4.60570 4.62801 4.65330 4.71135 4.75610 4.81127 4.86345 4.90880 4.93680 5.06624 5.09633 5.11401 5.12957 5.19101 5.20840 5.30866 5.42873 5.47976 5.49217 5.55498 5.62623 5.66354 5.99089 6.05624 6.18261 6.28386 6.47226 6.74343 7.04875 7.78349 8.79103 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.007041 B = 0.003125 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.666274 B = 8956.981778 C =12332.842422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.097 3.903 3 C -0.292 4.292 4 C 0.084 3.916 5 C 0.007 3.993 6 H 0.087 0.913 7 C -0.096 4.096 8 C -0.109 4.109 9 C 0.068 3.932 10 N -0.526 5.526 11 C 0.119 3.881 12 C -0.144 4.144 13 C -0.045 4.045 14 C -0.113 4.113 15 Cl -0.079 7.079 16 C -0.059 4.059 17 C -0.233 4.233 18 C 0.132 3.868 19 O -0.190 6.190 20 C -0.414 4.414 21 H 0.098 0.902 22 C -0.004 4.004 23 N -0.899 5.899 24 Si 1.002 2.998 25 H -0.256 1.256 26 H -0.272 1.272 27 H -0.275 1.275 28 C 0.076 3.924 29 N -0.325 5.325 30 N -0.470 5.470 31 H 0.449 0.551 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.016 0.984 43 H 0.096 0.904 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.131 0.869 47 H 0.270 0.730 48 H 0.019 0.981 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -12.511 -3.368 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C -0.321 4.321 4 C -0.082 4.082 5 C -0.014 4.014 6 H 0.105 0.895 7 C -0.134 4.134 8 C -0.147 4.147 9 C -0.059 4.059 10 N -0.250 5.250 11 C -0.009 4.009 12 C -0.146 4.146 13 C -0.064 4.064 14 C -0.140 4.140 15 Cl -0.050 7.050 16 C -0.078 4.078 17 C -0.252 4.252 18 C 0.080 3.920 19 O -0.095 6.095 20 C -0.490 4.490 21 H 0.115 0.885 22 C -0.204 4.204 23 N -0.536 5.536 24 Si 0.824 3.176 25 H -0.179 1.179 26 H -0.197 1.197 27 H -0.200 1.200 28 C -0.053 4.053 29 N -0.148 5.148 30 N -0.181 5.181 31 H 0.296 0.704 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.034 0.966 43 H 0.114 0.886 44 H 0.165 0.835 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.079 0.921 48 H 0.038 0.962 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.648 -13.894 -3.617 14.814 hybrid contribution -1.094 1.865 0.499 2.219 sum -4.742 -12.030 -3.117 13.301 Atomic orbital electron populations 1.20605 0.84174 1.05255 1.04758 1.21638 0.96235 0.86818 0.98555 1.21358 0.91776 1.00123 1.18859 1.22199 0.95911 0.91323 0.98755 1.19378 0.92705 0.93584 0.95699 0.89496 1.21478 0.97608 0.94291 1.00054 1.21531 0.98342 0.99185 0.95606 1.22101 1.00436 0.89842 0.93528 1.62137 1.33222 1.16088 1.13529 1.20622 0.91997 0.98543 0.89695 1.18941 0.95771 0.90746 1.09157 1.20649 0.88982 0.99797 0.97017 1.20489 0.87325 0.92649 1.13584 1.98295 1.36921 1.74845 1.94971 1.20869 0.98467 0.91992 0.96446 1.21184 0.91787 1.01294 1.10941 1.19617 0.87399 0.92140 0.92850 1.84164 1.27770 1.20255 1.77288 1.21754 0.95260 0.79913 1.52034 0.88499 1.26194 0.93753 1.04388 0.96091 1.70151 0.98304 1.37642 1.47468 0.84740 0.79298 0.75422 0.78181 1.17925 1.19716 1.20005 1.21927 0.90928 0.96338 0.96119 1.77230 0.97956 1.12703 1.26944 1.46291 1.03269 1.09029 1.59505 0.70442 0.88568 0.89008 0.89016 0.83673 0.90486 0.92421 0.92086 0.91194 0.96818 0.91210 0.96584 0.88552 0.83535 0.83851 0.85129 0.92130 0.96238 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.43 71.24 0.74 -0.15 16 2 C 0.10 1.88 7.21 41.41 0.30 2.18 16 3 C -0.29 -7.44 9.88 21.99 0.22 -7.23 16 4 C 0.08 2.43 6.13 43.10 0.26 2.69 16 5 C 0.01 0.21 2.81 -11.49 -0.03 0.18 16 6 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 7 C -0.10 -2.92 4.92 30.67 0.15 -2.77 16 8 C -0.11 -3.82 6.09 30.65 0.19 -3.63 16 9 C 0.07 2.90 4.05 86.33 0.35 3.25 16 10 N -0.53 -19.65 4.65 -900.94 -4.19 -23.84 16 11 C 0.12 4.55 4.99 85.56 0.43 4.97 16 12 C -0.14 -5.75 5.18 -19.75 -0.10 -5.85 16 13 C -0.05 -1.55 9.45 22.28 0.21 -1.34 16 14 C -0.11 -3.76 6.32 22.35 0.14 -3.62 16 15 Cl -0.08 -2.20 28.95 -2.72 -0.08 -2.28 16 16 C -0.06 -2.03 9.82 22.27 0.22 -1.81 16 17 C -0.23 -9.51 9.17 22.39 0.21 -9.31 16 18 C 0.13 6.00 5.37 22.58 0.12 6.12 16 19 O -0.19 -9.95 5.87 -22.79 -0.13 -10.08 16 20 C -0.41 -21.82 9.49 67.92 0.64 -21.18 16 21 H 0.10 4.79 5.20 -2.91 -0.02 4.77 16 22 C 0.00 -0.22 5.49 84.83 0.47 0.25 16 23 N -0.90 -50.26 13.67 21.61 0.30 -49.96 16 24 Si 1.00 40.55 29.55 68.60 2.03 42.58 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 C 0.08 2.52 4.72 86.32 0.41 2.93 16 29 N -0.32 -9.16 12.70 -47.38 -0.60 -9.76 16 30 N -0.47 -9.50 7.36 -48.00 -0.35 -9.85 16 31 H 0.45 5.71 8.96 -213.32 -1.91 3.80 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.15 3.63 7.36 -2.91 -0.02 3.61 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.84 7.19 -2.39 -0.02 1.82 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.01 0.68 7.98 -2.39 -0.02 0.66 16 41 H 0.07 3.38 4.42 -2.39 -0.01 3.37 16 42 H 0.02 0.71 7.85 -2.39 -0.02 0.70 16 43 H 0.10 3.09 7.85 -2.39 -0.02 3.08 16 44 H 0.15 4.27 8.04 -2.91 -0.02 4.25 16 45 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 46 H 0.13 5.37 5.64 -2.91 -0.02 5.35 16 47 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 48 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.08 2.41 8.01 -2.39 -0.02 2.40 16 Total: -1.00 -64.52 405.60 0.97 -63.55 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.92 Total: 33.94 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 4.92 Total: -34.31 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.85 Total: -93.41 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.13 Total: -10.08 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.28 kcal Total: -64.52 0.97 -63.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076059693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.669 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds