Wall clock time and date at job start Tue Mar 31 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47522 * 2 1 4 4 C 1.52992 * 109.47544 * 174.55812 * 3 2 1 5 5 N 1.46501 * 109.46635 * 54.55501 * 3 2 1 6 6 C 1.34777 * 119.99978 * 60.00758 * 5 3 2 7 7 O 1.21582 * 119.99818 * 359.97438 * 6 5 3 8 8 N 1.34784 * 120.00000 * 179.97438 * 6 5 3 9 9 C 1.39936 * 119.99994 * 174.79276 * 8 6 5 10 10 C 1.38957 * 120.03869 * 326.91549 * 9 8 6 11 11 C 1.38158 * 120.07234 * 179.71899 * 10 9 8 12 12 C 1.38172 * 120.13251 * 0.55179 * 11 10 9 13 13 C 1.38905 * 120.06897 * 359.72143 * 12 11 10 14 14 O 1.35753 * 120.03162 * 179.97438 * 13 12 11 15 15 C 1.34833 * 117.00080 * 185.76491 * 14 13 12 16 16 H 1.07998 * 120.00079 * 5.39264 * 15 14 13 17 17 C 1.38652 * 119.99972 * 185.38889 * 15 14 13 18 18 N 1.31563 * 119.99946 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47174 * 90.00009 * 19 17 15 21 21 H 1.48502 * 109.47060 * 209.99588 * 19 17 15 22 22 H 1.48493 * 109.47405 * 330.00197 * 19 17 15 23 23 C 1.38708 * 120.03518 * 147.18409 * 9 8 6 24 24 C 1.50701 * 109.47159 * 294.56223 * 3 2 1 25 25 N 1.29022 * 124.91734 * 172.35693 * 24 3 2 26 26 C 1.31784 * 117.12432 * 179.97438 * 25 24 3 27 27 C 1.50702 * 122.74889 * 180.02562 * 26 25 24 28 28 C 1.33634 * 114.49974 * 359.97438 * 26 25 24 29 29 S 1.70980 * 124.91192 * 352.04530 * 24 3 2 30 30 H 1.08998 * 109.46984 * 305.55426 * 1 2 3 31 31 H 1.09004 * 109.47508 * 65.55702 * 1 2 3 32 32 H 1.09004 * 109.47237 * 185.55295 * 1 2 3 33 33 H 1.09004 * 109.47158 * 240.00047 * 2 1 3 34 34 H 1.09002 * 109.47223 * 120.00530 * 2 1 3 35 35 H 1.09000 * 109.47306 * 60.00005 * 4 3 2 36 36 H 1.08999 * 109.47440 * 180.02562 * 4 3 2 37 37 H 1.09004 * 109.46723 * 300.00063 * 4 3 2 38 38 H 0.97000 * 119.99978 * 239.99973 * 5 3 2 39 39 H 0.96997 * 119.99536 * 354.79583 * 8 6 5 40 40 H 1.08003 * 119.96497 * 359.97438 * 10 9 8 41 41 H 1.07995 * 119.93310 * 180.24991 * 11 10 9 42 42 H 1.08004 * 119.96562 * 179.70123 * 12 11 10 43 43 H 0.96999 * 119.99662 * 180.02562 * 18 17 15 44 44 H 1.08005 * 120.06762 * 359.97438 * 23 9 8 45 45 H 1.08997 * 109.47033 * 90.00526 * 27 26 25 46 46 H 1.08999 * 109.46926 * 210.00270 * 27 26 25 47 47 H 1.08997 * 109.47323 * 329.99858 * 27 26 25 48 48 H 1.08005 * 126.04032 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5638 1.4446 0.1368 5 7 1.4476 2.1698 1.1253 6 6 1.6618 1.7487 2.3875 7 8 2.3463 0.7650 2.5923 8 7 1.1172 2.4182 3.4229 9 6 1.2480 1.9207 4.7242 10 6 1.2803 0.5491 4.9446 11 6 1.4152 0.0572 6.2286 12 6 1.5070 0.9268 7.2984 13 6 1.4696 2.2989 7.0853 14 8 1.5592 3.1525 8.1370 15 6 1.3967 4.4652 7.8755 16 1 1.1190 4.7878 6.8829 17 6 1.5861 5.4010 8.8809 18 7 1.4281 6.6819 8.6256 19 14 2.0671 4.8432 10.5975 20 1 3.5473 4.7943 10.7056 21 1 1.5292 5.8000 11.5978 22 1 1.5072 3.4920 10.8540 23 6 1.3399 2.7961 5.7962 24 6 1.6507 2.1129 -1.2923 25 7 1.8058 3.3678 -1.5491 26 6 1.4105 3.7922 -2.7325 27 6 1.5325 5.2305 -3.1653 28 6 0.8937 2.8423 -3.5177 29 16 0.9464 1.3194 -2.6330 30 1 -0.3633 0.5976 0.8361 31 1 -0.3634 0.4252 -0.9356 32 1 -0.3634 -1.0229 0.0994 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.0046 0.9034 -0.7004 36 1 3.9272 2.4722 0.1372 37 1 3.8453 0.9596 1.0715 38 1 0.9013 2.9545 0.9619 39 1 0.6346 3.2448 3.2658 40 1 1.2040 -0.1332 4.1109 41 1 1.4442 -1.0092 6.3969 42 1 1.6075 0.5392 8.3015 43 1 1.5609 7.3366 9.3289 44 1 1.3110 3.8626 5.6279 45 1 2.4961 5.3833 -3.6513 46 1 0.7310 5.4687 -3.8646 47 1 1.4585 5.8800 -2.2930 48 1 0.5137 2.9827 -4.5188 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076069243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:50 Heat of formation + Delta-G solvation = 23.703378 kcal Electronic energy + Delta-G solvation = -31533.015414 eV Core-core repulsion = 27295.207934 eV Total energy + Delta-G solvation = -4237.807480 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.99094 -40.09864 -39.02654 -37.49454 -36.15033 -34.25793 -32.57327 -32.26105 -32.07312 -30.16670 -29.26997 -28.43845 -28.00261 -25.67726 -25.17871 -23.65984 -22.84750 -21.74180 -20.91836 -20.16439 -19.76061 -18.69518 -18.09751 -17.64936 -17.49642 -16.44419 -15.67347 -15.48185 -15.36133 -15.09307 -14.76200 -14.52009 -14.38535 -14.18387 -14.00254 -13.79078 -13.66660 -13.55414 -13.40159 -13.05738 -12.99560 -12.73024 -12.53559 -12.33415 -12.18466 -12.14942 -11.78441 -11.61985 -11.55033 -11.37492 -11.18392 -11.12492 -10.89388 -10.75155 -10.25515 -10.08287 -9.88750 -9.74722 -9.58592 -9.46221 -9.20441 -9.00823 -8.82881 -7.74385 -7.23886 -6.40542 -4.07465 0.26284 0.93722 1.37292 2.00955 2.31218 2.35221 2.75432 3.22910 3.27114 3.29564 3.42441 3.49164 4.16976 4.25621 4.34191 4.56025 4.58918 4.75035 4.76965 4.87754 4.90531 4.98793 5.10641 5.22571 5.27145 5.29838 5.37719 5.44175 5.55312 5.64124 5.65889 5.78335 5.86146 5.93060 5.95987 6.01051 6.07681 6.15151 6.21574 6.25808 6.37640 6.46866 6.75413 6.95362 7.19080 7.24673 7.29394 7.36820 7.64465 7.80001 8.01595 8.05714 8.62746 8.95291 9.58189 10.67308 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002060 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.356814 B =13588.280196 C =15078.979414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.145 4.145 3 C 0.282 3.718 4 C -0.159 4.159 5 N -0.730 5.730 6 C 0.712 3.288 7 O -0.566 6.566 8 N -0.681 5.681 9 C 0.201 3.799 10 C -0.197 4.197 11 C -0.064 4.064 12 C -0.203 4.203 13 C 0.175 3.825 14 O -0.217 6.217 15 C -0.388 4.388 16 H 0.104 0.896 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.246 4.246 24 C 0.041 3.959 25 N -0.457 5.457 26 C 0.067 3.933 27 C -0.080 4.080 28 C -0.275 4.275 29 S 0.156 5.844 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.400 0.600 39 H 0.404 0.596 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.135 0.865 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -9.862 -26.011 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C 0.192 3.808 4 C -0.218 4.218 5 N -0.387 5.387 6 C 0.412 3.588 7 O -0.443 6.443 8 N -0.327 5.327 9 C 0.107 3.893 10 C -0.218 4.218 11 C -0.083 4.083 12 C -0.223 4.223 13 C 0.122 3.878 14 O -0.122 6.122 15 C -0.464 4.464 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.268 4.268 24 C -0.237 4.237 25 N -0.172 5.172 26 C -0.065 4.065 27 C -0.140 4.140 28 C -0.414 4.414 29 S 0.413 5.587 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.234 0.766 39 H 0.239 0.761 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.153 0.847 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.902 -11.265 -25.391 27.843 hybrid contribution -0.228 1.971 -0.003 1.984 sum -2.130 -9.294 -25.394 27.125 Atomic orbital electron populations 1.21942 0.95113 1.02461 1.01918 1.22160 0.96936 0.94426 1.04846 1.18522 0.94300 0.89853 0.78135 1.22262 0.91807 1.03458 1.04311 1.45088 1.56583 1.33430 1.03584 1.15729 0.79995 0.83085 0.79949 1.90872 1.42242 1.27456 1.83697 1.42598 1.57657 1.27650 1.04812 1.17175 0.98274 0.92436 0.81421 1.20630 1.10788 0.93245 0.97158 1.20519 0.97829 0.98324 0.91638 1.20227 1.12377 0.90400 0.99312 1.18790 0.92785 0.89818 0.86381 1.83615 1.79803 1.18070 1.30688 1.20717 1.47858 0.77576 1.00229 0.87829 1.24460 0.95963 0.93976 0.99616 1.69649 1.47651 0.99985 1.34690 0.86182 0.79254 0.79380 0.82114 1.19921 1.20842 1.18272 1.20897 1.14168 1.00208 0.91546 1.27046 1.02719 0.92886 1.01079 1.66055 1.18497 1.13324 1.19305 1.20337 0.98964 0.98436 0.88781 1.20380 1.02671 0.88892 1.02011 1.27063 1.11937 0.96050 1.06315 1.84048 1.55894 1.11668 1.07118 0.92025 0.92767 0.91920 0.90972 0.87393 0.91898 0.91619 0.88627 0.76586 0.76136 0.85878 0.86536 0.86487 0.91108 0.84730 0.90587 0.90716 0.90356 0.80622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.41 37.15 0.35 -1.05 16 2 C -0.14 -1.40 4.24 -26.74 -0.11 -1.51 16 3 C 0.28 2.98 0.72 -132.98 -0.10 2.88 16 4 C -0.16 -1.81 8.38 37.15 0.31 -1.50 16 5 N -0.73 -8.40 4.07 -53.51 -0.22 -8.62 16 6 C 0.71 10.36 7.50 -86.91 -0.65 9.71 16 7 O -0.57 -9.57 10.27 5.29 0.05 -9.51 16 8 N -0.68 -10.35 5.35 -14.24 -0.08 -10.42 16 9 C 0.20 3.76 6.28 -83.72 -0.53 3.23 16 10 C -0.20 -3.60 8.65 -39.34 -0.34 -3.94 16 11 C -0.06 -1.14 10.03 -39.63 -0.40 -1.54 16 12 C -0.20 -4.08 9.99 -39.36 -0.39 -4.47 16 13 C 0.17 4.05 6.64 -39.14 -0.26 3.79 16 14 O -0.22 -5.71 8.58 0.03 0.00 -5.71 16 15 C -0.39 -10.87 9.90 30.89 0.31 -10.56 16 16 H 0.10 2.95 5.53 -52.49 -0.29 2.66 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.88 -25.40 13.96 55.48 0.77 -24.62 16 19 Si 0.91 21.73 28.62 -169.99 -4.86 16.86 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.25 -5.29 9.04 -39.21 -0.35 -5.64 16 24 C 0.04 0.41 5.53 -13.46 -0.07 0.33 16 25 N -0.46 -4.92 10.49 -8.06 -0.08 -5.00 16 26 C 0.07 0.60 6.74 -84.22 -0.57 0.03 16 27 C -0.08 -0.52 10.31 36.01 0.37 -0.15 16 28 C -0.27 -2.02 11.13 29.12 0.32 -1.69 16 29 S 0.16 1.18 19.17 -107.50 -2.06 -0.88 16 30 H 0.06 0.63 7.09 -51.93 -0.37 0.27 16 31 H 0.05 0.43 5.39 -47.77 -0.26 0.18 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.58 7.48 -51.93 -0.39 0.19 16 34 H 0.11 1.27 6.33 -51.93 -0.33 0.94 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.28 6.16 -51.93 -0.32 0.96 16 38 H 0.40 4.15 8.45 -40.82 -0.34 3.81 16 39 H 0.40 5.15 8.83 -40.82 -0.36 4.79 16 40 H 0.12 2.17 6.39 -52.48 -0.34 1.84 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 43 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.14 3.00 5.71 -52.48 -0.30 2.70 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.18 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -31.86 400.51 -8.88 -40.74 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.23 Total: 11.55 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.21 Total: -10.42 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.40 Total: -48.66 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.05 Total: -15.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.86 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.06 Total: -0.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.86 -8.88 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076069243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.442 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds