Wall clock time and date at job start Tue Mar 31 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 C 1.53008 * 109.46669 * 185.00440 * 3 2 1 5 5 N 1.46498 * 109.47571 * 304.99995 * 3 2 1 6 6 C 1.34779 * 120.00020 * 300.00661 * 5 3 2 7 7 O 1.21583 * 120.00026 * 359.97438 * 6 5 3 8 8 N 1.34773 * 119.99543 * 179.97438 * 6 5 3 9 9 C 1.39952 * 119.99744 * 175.48849 * 8 6 5 10 10 C 1.38954 * 120.03871 * 214.85283 * 9 8 6 11 11 C 1.38157 * 120.06921 * 179.74863 * 10 9 8 12 12 C 1.38174 * 120.13671 * 0.55645 * 11 10 9 13 13 C 1.38903 * 120.06811 * 359.69909 * 12 11 10 14 14 O 1.35751 * 120.03512 * 180.02562 * 13 12 11 15 15 C 1.34832 * 116.99973 * 5.36265 * 14 13 12 16 16 H 1.08004 * 119.99800 * 354.96434 * 15 14 13 17 17 C 1.38646 * 120.00233 * 174.96975 * 15 14 13 18 18 N 1.31561 * 119.99931 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47762 * 89.99306 * 19 17 15 21 21 H 1.48497 * 109.47496 * 209.99644 * 19 17 15 22 22 H 1.48507 * 109.47059 * 329.99592 * 19 17 15 23 23 C 1.38708 * 120.03298 * 35.13456 * 9 8 6 24 24 C 1.50699 * 109.46947 * 65.00575 * 3 2 1 25 25 N 1.29029 * 124.91279 * 185.27363 * 24 3 2 26 26 C 1.31780 * 117.12365 * 180.22701 * 25 24 3 27 27 C 1.50697 * 122.75122 * 179.75885 * 26 25 24 28 28 C 1.33646 * 114.49944 * 359.48416 * 26 25 24 29 29 S 1.70974 * 124.91916 * 4.97121 * 24 3 2 30 30 H 1.08989 * 109.47453 * 59.99661 * 1 2 3 31 31 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46462 * 299.99697 * 1 2 3 33 33 H 1.09000 * 109.46462 * 240.00303 * 2 1 3 34 34 H 1.08996 * 109.47293 * 120.00717 * 2 1 3 35 35 H 1.09004 * 109.46869 * 299.99798 * 4 3 2 36 36 H 1.09001 * 109.47311 * 60.00009 * 4 3 2 37 37 H 1.09006 * 109.46881 * 180.02562 * 4 3 2 38 38 H 0.96999 * 120.00014 * 119.99555 * 5 3 2 39 39 H 0.97000 * 120.00388 * 355.49163 * 8 6 5 40 40 H 1.08003 * 119.96424 * 359.97438 * 10 9 8 41 41 H 1.07994 * 119.93372 * 180.27533 * 11 10 9 42 42 H 1.07994 * 119.96511 * 179.72159 * 12 11 10 43 43 H 0.97002 * 119.99678 * 180.02562 * 18 17 15 44 44 H 1.07999 * 120.06702 * 359.94838 * 23 9 8 45 45 H 1.09000 * 109.46650 * 269.73128 * 27 26 25 46 46 H 1.08998 * 109.47324 * 149.73289 * 27 26 25 47 47 H 1.08996 * 109.47669 * 29.72998 * 27 26 25 48 48 H 1.07998 * 126.03866 * 180.26334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1258 5 7 1.4559 2.1670 -1.1314 6 6 1.6791 1.7427 -2.3910 7 8 2.3657 0.7589 -2.5884 8 7 1.1413 2.4090 -3.4317 9 6 1.4492 2.0261 -4.7421 10 6 1.5572 2.9866 -5.7404 11 6 1.8662 2.6097 -7.0331 12 6 2.0574 1.2762 -7.3401 13 6 1.9457 0.3107 -6.3477 14 8 2.1342 -0.9993 -6.6499 15 6 2.5360 -1.2864 -7.9045 16 1 2.6147 -0.4991 -8.6398 17 6 2.8479 -2.5921 -8.2509 18 7 2.7524 -3.5510 -7.3552 19 14 3.4052 -2.9897 -9.9889 20 1 4.8835 -2.8770 -10.0728 21 1 2.9938 -4.3737 -10.3363 22 1 2.7813 -2.0345 -10.9395 23 6 1.6411 0.6866 -5.0470 24 6 1.6414 2.1162 1.2878 25 7 1.8339 3.3627 1.5594 26 6 1.4273 3.7906 2.7376 27 6 1.5933 5.2191 3.1880 28 6 0.8503 2.8553 3.4981 29 16 0.8620 1.3410 2.5973 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9995 0.9052 0.7160 36 1 3.8532 0.9570 -1.0573 37 1 3.9283 2.4720 -0.1254 38 1 0.9083 2.9521 -0.9739 39 1 0.5409 3.1541 -3.2726 40 1 1.4030 4.0293 -5.5047 41 1 1.9539 3.3586 -7.8064 42 1 2.2944 0.9843 -8.3524 43 1 2.9711 -4.4645 -7.5974 44 1 1.5540 -0.0622 -4.2736 45 1 2.5482 5.3293 3.7019 46 1 0.7826 5.4825 3.8673 47 1 1.5693 5.8788 2.3206 48 1 0.4481 3.0017 4.4896 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076069246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:53 Heat of formation + Delta-G solvation = 25.292291 kcal Electronic energy + Delta-G solvation = -31613.513167 eV Core-core repulsion = 27375.774587 eV Total energy + Delta-G solvation = -4237.738580 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.90988 -40.03568 -38.82194 -37.36931 -36.05907 -34.05426 -32.45217 -32.16508 -32.01679 -30.04614 -29.26939 -28.08900 -27.98515 -25.61663 -25.21794 -23.56787 -22.78595 -21.60727 -20.91540 -20.16736 -19.70246 -18.66695 -18.10899 -17.73551 -17.04819 -16.34930 -15.57083 -15.43426 -15.19498 -14.98422 -14.67004 -14.47553 -14.33183 -14.21378 -14.00103 -13.67585 -13.55653 -13.48068 -13.39323 -12.98321 -12.78487 -12.68985 -12.46980 -12.40577 -12.07487 -11.71369 -11.67754 -11.48573 -11.44818 -11.26049 -11.09124 -11.07899 -10.93760 -10.70466 -10.41779 -10.03820 -9.79894 -9.66021 -9.59674 -9.17286 -9.07702 -8.96284 -8.75640 -7.59604 -7.11165 -6.36386 -3.95258 0.29726 0.98494 1.42583 2.15588 2.36388 2.41966 2.80616 3.17605 3.18869 3.23391 3.37999 3.54656 4.02007 4.22816 4.40958 4.65338 4.67634 4.77715 4.85846 4.89767 5.10849 5.18362 5.20745 5.30073 5.35387 5.42710 5.45454 5.50181 5.61734 5.68896 5.78064 5.85941 5.90249 5.90494 6.06838 6.15044 6.19688 6.27573 6.33409 6.44307 6.49967 6.59788 6.91840 7.09621 7.13493 7.30295 7.39498 7.41616 7.56104 7.89029 8.08154 8.10523 8.73815 9.08765 9.81020 10.81615 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002014 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.769989 B =13900.572913 C =15001.515618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.148 4.148 3 C 0.282 3.718 4 C -0.158 4.158 5 N -0.731 5.731 6 C 0.706 3.294 7 O -0.554 6.554 8 N -0.681 5.681 9 C 0.194 3.806 10 C -0.237 4.237 11 C -0.059 4.059 12 C -0.247 4.247 13 C 0.167 3.833 14 O -0.174 6.174 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.185 4.185 24 C 0.042 3.958 25 N -0.458 5.458 26 C 0.065 3.935 27 C -0.079 4.079 28 C -0.278 4.278 29 S 0.164 5.836 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.401 0.599 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.269 0.731 44 H 0.137 0.863 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 14.694 21.723 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.187 4.187 3 C 0.192 3.808 4 C -0.218 4.218 5 N -0.388 5.388 6 C 0.406 3.594 7 O -0.429 6.429 8 N -0.328 5.328 9 C 0.100 3.900 10 C -0.258 4.258 11 C -0.078 4.078 12 C -0.267 4.267 13 C 0.112 3.888 14 O -0.077 6.077 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.206 4.206 24 C -0.237 4.237 25 N -0.173 5.173 26 C -0.068 4.068 27 C -0.138 4.138 28 C -0.417 4.417 29 S 0.420 5.580 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.235 0.765 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.154 0.846 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.949 12.609 21.564 25.465 hybrid contribution -0.179 1.637 -0.297 1.673 sum -5.128 14.246 21.267 26.106 Atomic orbital electron populations 1.21949 0.95186 1.02496 1.01704 1.22197 0.96886 0.94406 1.05226 1.18530 0.94405 0.89866 0.77964 1.22262 0.91756 1.03271 1.04500 1.45065 1.56907 1.33220 1.03593 1.15816 0.80412 0.83161 0.79973 1.90956 1.42247 1.26259 1.83457 1.42462 1.50098 1.36349 1.03875 1.16934 0.99242 0.92383 0.81452 1.20245 1.14980 0.97065 0.93530 1.20474 0.97042 0.95223 0.95050 1.21169 1.12247 0.92907 1.00377 1.19147 0.92118 0.85247 0.92286 1.83991 1.73484 1.18053 1.32208 1.21329 1.45707 0.94499 0.85112 0.89062 1.25286 0.96882 0.94574 0.99869 1.70058 1.44888 1.00853 1.33821 0.85721 0.79047 0.78231 0.80458 1.19929 1.20348 1.19235 1.20186 1.10761 0.94601 0.95083 1.27072 1.02251 0.93060 1.01298 1.66061 1.19524 1.13148 1.18584 1.20315 0.98850 0.98450 0.89163 1.20359 1.02557 0.89151 1.01750 1.27101 1.11399 0.96776 1.06452 1.84163 1.53155 1.12529 1.08120 0.92081 0.91733 0.92916 0.87080 0.90887 0.91903 0.88496 0.91740 0.76917 0.76507 0.87537 0.87151 0.85562 0.92116 0.84572 0.90652 0.90787 0.90523 0.80709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.35 37.16 0.35 -1.29 16 2 C -0.15 -1.72 4.25 -26.73 -0.11 -1.83 16 3 C 0.28 3.27 0.72 -132.97 -0.10 3.17 16 4 C -0.16 -1.99 8.38 37.16 0.31 -1.68 16 5 N -0.73 -8.68 4.17 -53.50 -0.22 -8.90 16 6 C 0.71 10.91 7.61 -86.92 -0.66 10.25 16 7 O -0.55 -10.79 10.04 5.29 0.05 -10.74 16 8 N -0.68 -10.01 5.34 -14.24 -0.08 -10.09 16 9 C 0.19 3.64 6.30 -83.71 -0.53 3.11 16 10 C -0.24 -4.12 9.96 -39.35 -0.39 -4.51 16 11 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 12 C -0.25 -5.50 9.17 -39.36 -0.36 -5.87 16 13 C 0.17 4.22 6.64 -39.14 -0.26 3.96 16 14 O -0.17 -5.17 9.76 0.04 0.00 -5.17 16 15 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 16 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 19 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.18 -4.25 8.64 -39.21 -0.34 -4.59 16 24 C 0.04 0.43 5.53 -13.46 -0.07 0.35 16 25 N -0.46 -4.92 10.53 -8.06 -0.08 -5.00 16 26 C 0.06 0.57 6.74 -84.23 -0.57 0.00 16 27 C -0.08 -0.48 10.31 36.00 0.37 -0.11 16 28 C -0.28 -2.10 11.13 29.12 0.32 -1.77 16 29 S 0.16 1.34 19.03 -107.50 -2.05 -0.70 16 30 H 0.06 0.71 7.29 -51.94 -0.38 0.34 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.48 5.09 -41.57 -0.21 0.27 16 33 H 0.11 1.63 6.32 -51.93 -0.33 1.30 16 34 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.47 6.16 -51.93 -0.32 1.15 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.97 8.48 -40.82 -0.35 3.62 16 39 H 0.40 4.33 8.84 -40.82 -0.36 3.97 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.14 3.34 6.22 -52.49 -0.33 3.02 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 401.26 15.07 6.05 6.05 Total: -1.00 -34.20 401.26 -9.00 -43.20 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.17 Total: 12.80 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.24 Total: -12.21 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.37 Total: -49.17 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.05 Total: -15.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.05 Total: -0.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.20 -9.00 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076069246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.492 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds