Wall clock time and date at job start Tue Mar 31 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46890 * 2 1 4 4 C 1.53008 * 109.46669 * 185.00440 * 3 2 1 5 5 N 1.46498 * 109.47571 * 304.99995 * 3 2 1 6 6 C 1.34779 * 120.00020 * 300.00661 * 5 3 2 7 7 O 1.21583 * 120.00026 * 359.97438 * 6 5 3 8 8 N 1.34773 * 119.99543 * 179.97438 * 6 5 3 9 9 C 1.39952 * 119.99744 * 175.48849 * 8 6 5 10 10 C 1.38954 * 120.03871 * 214.85283 * 9 8 6 11 11 C 1.38157 * 120.06921 * 179.74863 * 10 9 8 12 12 C 1.38174 * 120.13671 * 0.55645 * 11 10 9 13 13 C 1.38903 * 120.06811 * 359.69909 * 12 11 10 14 14 O 1.35751 * 120.03512 * 180.02562 * 13 12 11 15 15 C 1.34832 * 116.99973 * 5.36265 * 14 13 12 16 16 H 1.08004 * 119.99800 * 354.96434 * 15 14 13 17 17 C 1.38646 * 120.00233 * 174.96975 * 15 14 13 18 18 N 1.31561 * 119.99931 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47762 * 89.99306 * 19 17 15 21 21 H 1.48497 * 109.47496 * 209.99644 * 19 17 15 22 22 H 1.48507 * 109.47059 * 329.99592 * 19 17 15 23 23 C 1.38708 * 120.03298 * 35.13456 * 9 8 6 24 24 C 1.50699 * 109.46947 * 65.00575 * 3 2 1 25 25 N 1.29029 * 124.91279 * 185.27363 * 24 3 2 26 26 C 1.31780 * 117.12365 * 180.22701 * 25 24 3 27 27 C 1.50697 * 122.75122 * 179.75885 * 26 25 24 28 28 C 1.33646 * 114.49944 * 359.48416 * 26 25 24 29 29 S 1.70974 * 124.91916 * 4.97121 * 24 3 2 30 30 H 1.08989 * 109.47453 * 59.99661 * 1 2 3 31 31 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46462 * 299.99697 * 1 2 3 33 33 H 1.09000 * 109.46462 * 240.00303 * 2 1 3 34 34 H 1.08996 * 109.47293 * 120.00717 * 2 1 3 35 35 H 1.09004 * 109.46869 * 299.99798 * 4 3 2 36 36 H 1.09001 * 109.47311 * 60.00009 * 4 3 2 37 37 H 1.09006 * 109.46881 * 180.02562 * 4 3 2 38 38 H 0.96999 * 120.00014 * 119.99555 * 5 3 2 39 39 H 0.97000 * 120.00388 * 355.49163 * 8 6 5 40 40 H 1.08003 * 119.96424 * 359.97438 * 10 9 8 41 41 H 1.07994 * 119.93372 * 180.27533 * 11 10 9 42 42 H 1.07994 * 119.96511 * 179.72159 * 12 11 10 43 43 H 0.97002 * 119.99678 * 180.02562 * 18 17 15 44 44 H 1.07999 * 120.06702 * 359.94838 * 23 9 8 45 45 H 1.09000 * 109.46650 * 269.73128 * 27 26 25 46 46 H 1.08998 * 109.47324 * 149.73289 * 27 26 25 47 47 H 1.08996 * 109.47669 * 29.72998 * 27 26 25 48 48 H 1.07998 * 126.03866 * 180.26334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1258 5 7 1.4559 2.1670 -1.1314 6 6 1.6791 1.7427 -2.3910 7 8 2.3657 0.7589 -2.5884 8 7 1.1413 2.4090 -3.4317 9 6 1.4492 2.0261 -4.7421 10 6 1.5572 2.9866 -5.7404 11 6 1.8662 2.6097 -7.0331 12 6 2.0574 1.2762 -7.3401 13 6 1.9457 0.3107 -6.3477 14 8 2.1342 -0.9993 -6.6499 15 6 2.5360 -1.2864 -7.9045 16 1 2.6147 -0.4991 -8.6398 17 6 2.8479 -2.5921 -8.2509 18 7 2.7524 -3.5510 -7.3552 19 14 3.4052 -2.9897 -9.9889 20 1 4.8835 -2.8770 -10.0728 21 1 2.9938 -4.3737 -10.3363 22 1 2.7813 -2.0345 -10.9395 23 6 1.6411 0.6866 -5.0470 24 6 1.6414 2.1162 1.2878 25 7 1.8339 3.3627 1.5594 26 6 1.4273 3.7906 2.7376 27 6 1.5933 5.2191 3.1880 28 6 0.8503 2.8553 3.4981 29 16 0.8620 1.3410 2.5973 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9995 0.9052 0.7160 36 1 3.8532 0.9570 -1.0573 37 1 3.9283 2.4720 -0.1254 38 1 0.9083 2.9521 -0.9739 39 1 0.5409 3.1541 -3.2726 40 1 1.4030 4.0293 -5.5047 41 1 1.9539 3.3586 -7.8064 42 1 2.2944 0.9843 -8.3524 43 1 2.9711 -4.4645 -7.5974 44 1 1.5540 -0.0622 -4.2736 45 1 2.5482 5.3293 3.7019 46 1 0.7826 5.4825 3.8673 47 1 1.5693 5.8788 2.3206 48 1 0.4481 3.0017 4.4896 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076069246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:52 Heat of formation + Delta-G solvation = 1.409575 kcal Electronic energy + Delta-G solvation = -31614.548799 eV Core-core repulsion = 27375.774587 eV Total energy + Delta-G solvation = -4238.774212 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.04765 -41.02073 -40.41979 -38.77752 -37.50501 -35.52740 -34.24524 -33.53271 -32.70652 -31.18075 -30.85818 -29.62837 -28.53290 -27.30247 -26.45099 -24.48721 -24.20183 -23.18652 -22.35799 -21.11364 -20.58418 -20.02008 -19.63667 -19.02489 -18.44943 -17.46913 -16.83923 -16.72506 -16.57593 -16.23872 -15.98421 -15.97153 -15.63665 -15.42467 -15.22234 -15.04815 -14.86084 -14.51307 -14.32237 -14.21052 -14.10157 -13.58859 -13.52194 -13.43315 -13.24332 -13.18447 -13.04678 -12.89150 -12.67210 -12.52701 -12.35750 -12.30366 -12.10504 -12.06509 -11.98766 -11.39743 -11.22629 -10.85845 -10.73849 -10.67173 -10.39290 -10.18063 -9.63590 -9.26204 -8.81999 -8.43710 -6.12768 -0.39450 0.29667 0.52122 0.75151 0.77490 1.35407 1.45729 1.48466 1.54191 1.81639 2.07046 2.20465 2.77420 2.86865 3.08021 3.21775 3.51602 3.63013 3.86970 3.92253 4.17300 4.19456 4.28515 4.37668 4.40351 4.41058 4.46303 4.55179 4.59815 4.72535 4.76707 4.79441 4.79861 4.84880 4.89646 4.98320 5.06106 5.13290 5.14907 5.19368 5.23836 5.35879 5.40903 5.44610 5.52801 5.68203 5.78688 5.95082 6.07035 6.25879 6.71854 6.95854 7.00113 7.50235 7.83814 8.80050 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002014 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.769989 B =13900.572913 C =15001.515618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.284 3.716 4 C -0.153 4.153 5 N -0.711 5.711 6 C 0.703 3.297 7 O -0.597 6.597 8 N -0.667 5.667 9 C 0.204 3.796 10 C -0.207 4.207 11 C -0.049 4.049 12 C -0.257 4.257 13 C 0.126 3.874 14 O -0.234 6.234 15 C -0.412 4.412 16 H 0.105 0.895 17 C -0.029 4.029 18 N -0.924 5.924 19 Si 1.022 2.978 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.249 1.249 23 C -0.208 4.208 24 C 0.018 3.982 25 N -0.474 5.474 26 C 0.043 3.957 27 C -0.076 4.076 28 C -0.263 4.263 29 S 0.189 5.811 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.409 0.591 39 H 0.424 0.576 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.122 0.878 43 H 0.271 0.729 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 18.752 22.868 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.194 3.806 4 C -0.212 4.212 5 N -0.368 5.368 6 C 0.404 3.596 7 O -0.474 6.474 8 N -0.317 5.317 9 C 0.109 3.891 10 C -0.228 4.228 11 C -0.067 4.067 12 C -0.277 4.277 13 C 0.075 3.925 14 O -0.141 6.141 15 C -0.488 4.488 16 H 0.123 0.877 17 C -0.225 4.225 18 N -0.562 5.562 19 Si 0.841 3.159 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.172 1.172 23 C -0.230 4.230 24 C -0.260 4.260 25 N -0.190 5.190 26 C -0.089 4.089 27 C -0.136 4.136 28 C -0.402 4.402 29 S 0.445 5.555 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.263 0.737 40 H 0.177 0.823 41 H 0.176 0.824 42 H 0.140 0.860 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.088 0.912 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.034 16.778 22.761 28.913 hybrid contribution 0.061 0.692 -0.343 0.775 sum -5.974 17.470 22.418 29.043 Atomic orbital electron populations 1.21914 0.94203 1.02791 1.01920 1.22117 0.97714 0.94468 1.04224 1.18432 0.93566 0.89944 0.78674 1.22156 0.93011 1.02707 1.03370 1.44885 1.56214 1.33248 1.02453 1.15992 0.80066 0.82607 0.80974 1.90970 1.44074 1.28195 1.84195 1.42263 1.50313 1.36795 1.02291 1.17039 0.97506 0.90981 0.83589 1.20838 1.10686 0.99010 0.92226 1.20991 0.94762 0.94194 0.96799 1.21309 1.12699 0.94246 0.99457 1.19680 0.93883 0.84865 0.94028 1.83957 1.76407 1.20690 1.33040 1.21887 1.45963 0.95439 0.85474 0.87729 1.26688 0.96723 0.94005 1.05114 1.70229 1.47749 1.01426 1.36814 0.84540 0.78777 0.78383 0.74176 1.18961 1.19660 1.17200 1.20190 1.12692 0.96285 0.93813 1.26639 1.04366 0.93587 1.01379 1.66048 1.19649 1.13375 1.19879 1.20739 0.99427 0.99904 0.88847 1.20432 1.03759 0.87433 1.01943 1.27508 1.09762 0.95709 1.07231 1.84046 1.51978 1.12575 1.06926 0.93526 0.91509 0.90911 0.90861 0.89130 0.90476 0.91770 0.92078 0.75416 0.73719 0.82252 0.82439 0.86016 0.91977 0.87633 0.90154 0.88553 0.91151 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.35 71.98 0.67 -2.51 16 2 C -0.15 -3.54 4.25 30.60 0.13 -3.41 16 3 C 0.28 6.60 0.72 2.86 0.00 6.60 16 4 C -0.15 -4.00 8.38 71.98 0.60 -3.40 16 5 N -0.71 -16.76 4.17 -441.44 -1.84 -18.60 16 6 C 0.70 22.21 7.61 179.05 1.36 23.57 16 7 O -0.60 -25.00 10.04 -3.98 -0.04 -25.04 16 8 N -0.67 -18.83 5.34 -317.23 -1.70 -20.52 16 9 C 0.20 7.49 6.30 38.13 0.24 7.73 16 10 C -0.21 -6.35 9.96 22.42 0.22 -6.13 16 11 C -0.05 -1.65 10.03 22.24 0.22 -1.43 16 12 C -0.26 -11.52 9.17 22.41 0.21 -11.32 16 13 C 0.13 6.79 6.64 22.56 0.15 6.94 16 14 O -0.23 -15.11 9.76 -22.77 -0.22 -15.33 16 15 C -0.41 -25.06 9.49 67.92 0.64 -24.42 16 16 H 0.11 5.77 5.20 -2.91 -0.02 5.75 16 17 C -0.03 -1.69 5.49 84.83 0.47 -1.23 16 18 N -0.92 -59.55 13.67 21.61 0.30 -59.26 16 19 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 23 C -0.21 -10.12 8.64 22.51 0.19 -9.93 16 24 C 0.02 0.34 5.53 88.52 0.49 0.83 16 25 N -0.47 -9.31 10.53 -179.40 -1.89 -11.19 16 26 C 0.04 0.64 6.74 41.52 0.28 0.92 16 27 C -0.08 -0.72 10.31 71.23 0.73 0.01 16 28 C -0.26 -3.06 11.13 66.78 0.74 -2.32 16 29 S 0.19 2.65 19.03 -56.49 -1.07 1.57 16 30 H 0.05 1.11 7.29 -2.39 -0.02 1.09 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.22 5.09 -8.97 -0.05 1.17 16 33 H 0.07 2.38 6.32 -2.39 -0.02 2.37 16 34 H 0.09 1.81 7.57 -2.39 -0.02 1.79 16 35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.06 2.12 6.16 -2.39 -0.01 2.11 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.41 7.60 8.48 -92.71 -0.79 6.81 16 39 H 0.42 7.89 8.84 -92.71 -0.82 7.07 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 42 H 0.12 5.47 5.63 -2.91 -0.02 5.45 16 43 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 44 H 0.11 5.73 6.22 -2.91 -0.02 5.71 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.10 0.45 8.12 -2.39 -0.02 0.44 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -84.52 401.26 2.32 -82.20 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.60 Total: 39.13 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 7.36 Total: -19.47 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -5.13 Total: -109.58 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.26 Total: -40.37 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.07 Total: 1.57 kcal Total: -84.52 2.32 -82.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076069246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.610 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds