Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86793 * 119.99982 * 2 1 4 4 H 1.48502 * 109.47340 * 240.00569 * 3 2 1 5 5 H 1.48505 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47357 * 120.00088 * 3 2 1 7 7 C 1.39892 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99633 * 175.55312 * 7 2 1 9 9 C 1.41150 * 120.00508 * 355.55477 * 7 2 1 10 10 C 1.40869 * 120.16875 * 214.78045 * 9 7 2 11 11 C 1.36371 * 119.83045 * 180.02562 * 10 9 7 12 12 C 1.39472 * 120.17191 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.83751 * 179.97438 * 12 11 10 14 14 C 1.34770 * 119.99956 * 35.29360 * 13 12 11 15 15 O 1.21587 * 120.00015 * 355.71564 * 14 13 12 16 16 N 1.34771 * 120.00352 * 175.71473 * 14 13 12 17 17 C 1.46499 * 120.00650 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47467 * 179.97438 * 17 16 14 19 19 C 1.38259 * 119.99617 * 270.20929 * 18 17 16 20 20 C 1.38220 * 119.99824 * 180.25172 * 19 18 17 21 21 C 1.38263 * 119.99534 * 359.51680 * 20 19 18 22 22 C 1.38211 * 120.00230 * 0.27778 * 21 20 19 23 23 C 1.50699 * 119.99699 * 179.97438 * 22 21 20 24 24 N 1.46504 * 109.47064 * 90.00063 * 23 22 21 25 25 C 1.36884 * 126.39418 * 269.70964 * 24 23 22 26 26 C 1.34663 * 106.81616 * 179.84614 * 25 24 23 27 27 N 1.34132 * 108.02176 * 0.41718 * 26 25 24 28 28 C 1.30493 * 109.25530 * 359.73672 * 27 26 25 29 29 C 1.38208 * 120.00374 * 90.00180 * 18 17 16 30 30 C 1.39485 * 120.33331 * 0.25291 * 12 11 10 31 31 C 1.36378 * 120.16422 * 359.43981 * 30 12 11 32 32 H 0.96991 * 120.00200 * 359.97438 * 1 2 3 33 33 H 1.08005 * 120.07751 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.91456 * 180.02562 * 11 10 9 35 35 H 0.97001 * 119.99444 * 215.29907 * 13 12 11 36 36 H 0.97004 * 119.99500 * 359.97438 * 16 14 13 37 37 H 1.09004 * 109.47032 * 59.99271 * 17 16 14 38 38 H 1.09002 * 109.47170 * 300.00227 * 17 16 14 39 39 H 1.07995 * 120.00428 * 0.04806 * 19 18 17 40 40 H 1.07993 * 120.00462 * 179.78576 * 20 19 18 41 41 H 1.08004 * 119.99786 * 180.25275 * 21 20 19 42 42 H 1.08997 * 109.46910 * 209.99381 * 23 22 21 43 43 H 1.08996 * 109.47509 * 329.99863 * 23 22 21 44 44 H 1.08001 * 126.58790 * 359.97438 * 25 24 23 45 45 H 1.08001 * 125.98894 * 180.12430 * 26 25 24 46 46 H 1.08001 * 125.65023 * 180.02562 * 28 27 26 47 47 H 1.08003 * 119.99462 * 359.97438 * 29 18 17 48 48 H 1.07997 * 119.91658 * 179.70299 * 30 12 11 49 49 H 1.08002 * 120.08617 * 180.25303 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0731 9 6 1.3058 -2.4322 0.0937 10 6 1.8651 -3.5186 0.7945 11 6 1.1806 -4.6949 0.8808 12 6 -0.0699 -4.8242 0.2768 13 7 -0.7625 -6.0287 0.3688 14 6 -0.6808 -6.7689 1.4920 15 8 0.0582 -6.4251 2.3943 16 7 -1.4180 -7.8903 1.6152 17 6 -1.3296 -8.6948 2.8364 18 6 -2.2468 -9.8849 2.7215 19 6 -3.5580 -9.7910 3.1498 20 6 -4.3979 -10.8842 3.0493 21 6 -3.9294 -12.0685 2.5112 22 6 -2.6199 -12.1611 2.0791 23 6 -2.1093 -13.4522 1.4932 24 7 -2.3294 -13.4519 0.0447 25 6 -3.4391 -13.9165 -0.6082 26 6 -3.2267 -13.7228 -1.9238 27 7 -2.0164 -13.1637 -2.0708 28 6 -1.4731 -12.9985 -0.8959 29 6 -1.7785 -11.0690 2.1841 30 6 -0.6277 -3.7548 -0.4238 31 6 0.0421 -2.5702 -0.5134 32 1 -0.4850 0.8400 0.0004 33 1 2.8336 -3.4200 1.2624 34 1 1.6080 -5.5286 1.4182 35 1 -1.3037 -6.3349 -0.3757 36 1 -2.0078 -8.1645 0.8955 37 1 -1.6264 -8.0891 3.6927 38 1 -0.3039 -9.0378 2.9721 39 1 -3.9252 -8.8645 3.5660 40 1 -5.4211 -10.8119 3.3870 41 1 -4.5868 -12.9215 2.4288 42 1 -1.0431 -13.5477 1.6985 43 1 -2.6423 -14.2906 1.9415 44 1 -4.3172 -14.3526 -0.1551 45 1 -3.9092 -13.9776 -2.7211 46 1 -0.4999 -12.5698 -0.7071 47 1 -0.7553 -11.1411 1.8461 48 1 -1.5943 -3.8639 -0.8930 49 1 -0.3929 -1.7418 -1.0527 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076084339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = 88.704098 kcal Electronic energy + Delta-G solvation = -31567.660576 eV Core-core repulsion = 27267.634970 eV Total energy + Delta-G solvation = -4300.025605 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.36913 -40.26103 -39.60849 -37.44546 -35.60276 -34.58308 -34.22132 -32.90214 -31.55358 -31.50950 -29.72649 -29.52837 -28.77509 -26.97069 -26.43923 -24.60131 -22.79043 -22.00833 -21.60695 -21.46020 -20.94363 -20.80710 -20.06725 -18.14847 -17.78134 -17.22307 -17.10970 -16.58344 -16.18954 -16.01181 -15.27253 -15.03584 -14.90630 -14.79135 -14.61516 -14.27807 -14.10153 -13.86052 -13.71569 -13.59104 -13.27202 -13.20939 -12.96905 -12.83216 -12.63043 -12.55704 -12.07146 -11.76130 -11.66797 -11.49969 -11.30340 -11.09639 -10.98352 -10.69002 -10.30218 -10.10926 -10.01019 -9.58588 -9.43482 -9.40542 -9.33214 -9.15598 -8.96946 -8.84004 -8.82615 -7.49185 -6.79004 -6.56626 -4.28899 0.63731 0.80412 1.72926 2.43078 2.70978 2.90340 2.98673 3.11656 3.13471 3.15303 3.20245 3.42987 3.70804 3.96023 4.01832 4.02048 4.30189 4.41905 4.47302 4.51719 4.57472 4.67721 4.73464 4.75660 4.91048 4.95157 5.11183 5.21320 5.34111 5.38146 5.53525 5.60938 5.70201 5.80738 5.91665 5.98088 6.12461 6.23888 6.40415 6.41550 6.45466 6.54280 6.80805 6.81810 6.84738 7.09094 7.19588 7.31059 7.44330 7.70027 7.77981 7.90294 8.01279 8.14032 8.35730 8.48771 8.68704 8.96225 8.98138 9.11739 10.34661 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.001506 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.055864 B =18592.064919 C =19467.112417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.098 3.902 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.666 5.666 14 C 0.695 3.305 15 O -0.578 6.578 16 N -0.750 5.750 17 C 0.182 3.818 18 C -0.101 4.101 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.093 4.093 22 C -0.122 4.122 23 C 0.148 3.852 24 N -0.455 5.455 25 C -0.057 4.057 26 C -0.030 4.030 27 N -0.494 5.494 28 C 0.186 3.814 29 C -0.078 4.078 30 C -0.123 4.123 31 C -0.140 4.140 32 H 0.277 0.723 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.171 0.829 45 H 0.168 0.832 46 H 0.202 0.798 47 H 0.126 0.874 48 H 0.090 0.910 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -27.495 4.145 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.312 5.312 14 C 0.396 3.604 15 O -0.455 6.455 16 N -0.407 5.407 17 C 0.057 3.943 18 C -0.102 4.102 19 C -0.106 4.106 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.123 4.123 23 C 0.026 3.974 24 N -0.138 5.138 25 C -0.189 4.189 26 C -0.178 4.178 27 N -0.212 5.212 28 C -0.097 4.097 29 C -0.098 4.098 30 C -0.144 4.144 31 C -0.160 4.160 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.225 0.775 36 H 0.226 0.774 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.188 0.812 45 H 0.185 0.815 46 H 0.219 0.781 47 H 0.144 0.856 48 H 0.108 0.892 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.150 -26.798 4.398 28.991 hybrid contribution -0.833 0.290 0.291 0.929 sum -10.983 -26.508 4.689 29.074 Atomic orbital electron populations 1.69758 1.07244 1.28691 1.38462 1.25864 0.94937 1.01090 0.92642 0.86259 0.79781 0.80207 0.79719 1.19092 1.20495 1.19155 1.19442 0.94658 0.90231 1.44974 0.90711 1.17714 0.92332 0.92027 0.88426 1.20802 1.01181 0.94940 1.05478 1.20416 0.92765 0.97929 0.99579 1.17073 0.93748 0.84964 1.11125 1.42113 1.51637 1.22089 1.15342 1.16005 0.81252 0.79964 0.83180 1.90915 1.42238 1.71500 1.40811 1.45138 1.48639 1.26552 1.20387 1.19942 0.98191 0.88520 0.87608 1.19965 0.94886 0.95155 1.00150 1.21267 0.92844 0.98853 0.97649 1.21173 1.00068 0.92908 0.99780 1.21041 0.94539 0.98125 0.97440 1.19863 0.94916 0.95461 1.02073 1.20726 1.03344 0.96133 0.77206 1.45635 1.15123 1.45886 1.07119 1.22690 0.93543 1.08745 0.93946 1.22316 0.95689 1.04872 0.94926 1.70325 1.08828 1.18061 1.23998 1.25035 0.98264 1.03247 0.83132 1.20993 0.99746 0.91860 0.97162 1.20297 0.98392 0.93053 1.02643 1.21173 0.97309 0.95448 1.02089 0.91181 0.88651 0.87358 0.77512 0.77367 0.90699 0.90792 0.85337 0.85500 0.86009 0.87827 0.88137 0.81179 0.81508 0.78108 0.85563 0.89180 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.50 10.60 55.54 0.59 -20.91 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 3 Si 0.92 19.31 29.56 -169.99 -5.03 14.28 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.52 9.02 -37.86 -0.34 -12.86 16 8 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.09 -2.12 8.61 -39.79 -0.34 -2.46 16 12 C 0.02 0.53 6.31 -83.57 -0.53 0.00 16 13 N -0.67 -11.91 5.31 -14.10 -0.07 -11.99 16 14 C 0.70 12.28 8.40 -86.93 -0.73 11.55 16 15 O -0.58 -12.70 13.76 5.29 0.07 -12.63 16 16 N -0.75 -9.24 5.55 -66.42 -0.37 -9.61 16 17 C 0.18 1.92 5.80 -5.20 -0.03 1.89 16 18 C -0.10 -0.81 5.25 -104.63 -0.55 -1.36 16 19 C -0.09 -0.65 9.70 -39.58 -0.38 -1.03 16 20 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 21 C -0.09 -0.51 9.70 -39.58 -0.38 -0.90 16 22 C -0.12 -0.69 5.46 -104.63 -0.57 -1.27 16 23 C 0.15 0.59 6.28 -5.19 -0.03 0.56 16 24 N -0.45 -3.00 2.73 -119.87 -0.33 -3.33 16 25 C -0.06 -0.39 11.58 -16.56 -0.19 -0.58 16 26 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 27 N -0.49 -5.58 11.25 -14.67 -0.17 -5.75 16 28 C 0.19 1.59 12.56 -90.38 -1.14 0.45 16 29 C -0.08 -0.54 9.36 -39.59 -0.37 -0.91 16 30 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 31 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 34 H 0.11 2.63 6.22 -52.48 -0.33 2.30 16 35 H 0.39 5.56 8.83 -40.82 -0.36 5.20 16 36 H 0.39 3.96 8.48 -40.82 -0.35 3.61 16 37 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.12 0.44 8.06 -52.48 -0.42 0.02 16 42 H 0.10 0.26 8.09 -51.93 -0.42 -0.16 16 43 H 0.10 0.23 8.09 -51.93 -0.42 -0.19 16 44 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 48 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 49 H 0.13 3.54 6.13 -52.49 -0.32 3.21 16 LS Contribution 419.92 15.07 6.33 6.33 Total: -1.00 -34.80 419.92 -13.36 -48.16 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -6.39 Total: 13.13 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -8.00 Total: -17.68 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.35 Total: -51.59 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.80 -13.36 -48.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.859 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds