Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86793 * 119.99982 * 2 1 4 4 H 1.48502 * 109.47340 * 240.00569 * 3 2 1 5 5 H 1.48505 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47357 * 120.00088 * 3 2 1 7 7 C 1.39892 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99633 * 175.55312 * 7 2 1 9 9 C 1.41150 * 120.00508 * 355.55477 * 7 2 1 10 10 C 1.40869 * 120.16875 * 214.78045 * 9 7 2 11 11 C 1.36371 * 119.83045 * 180.02562 * 10 9 7 12 12 C 1.39472 * 120.17191 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.83751 * 179.97438 * 12 11 10 14 14 C 1.34770 * 119.99956 * 35.29360 * 13 12 11 15 15 O 1.21587 * 120.00015 * 355.71564 * 14 13 12 16 16 N 1.34771 * 120.00352 * 175.71473 * 14 13 12 17 17 C 1.46499 * 120.00650 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47467 * 179.97438 * 17 16 14 19 19 C 1.38259 * 119.99617 * 270.20929 * 18 17 16 20 20 C 1.38220 * 119.99824 * 180.25172 * 19 18 17 21 21 C 1.38263 * 119.99534 * 359.51680 * 20 19 18 22 22 C 1.38211 * 120.00230 * 0.27778 * 21 20 19 23 23 C 1.50699 * 119.99699 * 179.97438 * 22 21 20 24 24 N 1.46504 * 109.47064 * 90.00063 * 23 22 21 25 25 C 1.36884 * 126.39418 * 269.70964 * 24 23 22 26 26 C 1.34663 * 106.81616 * 179.84614 * 25 24 23 27 27 N 1.34132 * 108.02176 * 0.41718 * 26 25 24 28 28 C 1.30493 * 109.25530 * 359.73672 * 27 26 25 29 29 C 1.38208 * 120.00374 * 90.00180 * 18 17 16 30 30 C 1.39485 * 120.33331 * 0.25291 * 12 11 10 31 31 C 1.36378 * 120.16422 * 359.43981 * 30 12 11 32 32 H 0.96991 * 120.00200 * 359.97438 * 1 2 3 33 33 H 1.08005 * 120.07751 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.91456 * 180.02562 * 11 10 9 35 35 H 0.97001 * 119.99444 * 215.29907 * 13 12 11 36 36 H 0.97004 * 119.99500 * 359.97438 * 16 14 13 37 37 H 1.09004 * 109.47032 * 59.99271 * 17 16 14 38 38 H 1.09002 * 109.47170 * 300.00227 * 17 16 14 39 39 H 1.07995 * 120.00428 * 0.04806 * 19 18 17 40 40 H 1.07993 * 120.00462 * 179.78576 * 20 19 18 41 41 H 1.08004 * 119.99786 * 180.25275 * 21 20 19 42 42 H 1.08997 * 109.46910 * 209.99381 * 23 22 21 43 43 H 1.08996 * 109.47509 * 329.99863 * 23 22 21 44 44 H 1.08001 * 126.58790 * 359.97438 * 25 24 23 45 45 H 1.08001 * 125.98894 * 180.12430 * 26 25 24 46 46 H 1.08001 * 125.65023 * 180.02562 * 28 27 26 47 47 H 1.08003 * 119.99462 * 359.97438 * 29 18 17 48 48 H 1.07997 * 119.91658 * 179.70299 * 30 12 11 49 49 H 1.08002 * 120.08617 * 180.25303 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2126 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0731 9 6 1.3058 -2.4322 0.0937 10 6 1.8651 -3.5186 0.7945 11 6 1.1806 -4.6949 0.8808 12 6 -0.0699 -4.8242 0.2768 13 7 -0.7625 -6.0287 0.3688 14 6 -0.6808 -6.7689 1.4920 15 8 0.0582 -6.4251 2.3943 16 7 -1.4180 -7.8903 1.6152 17 6 -1.3296 -8.6948 2.8364 18 6 -2.2468 -9.8849 2.7215 19 6 -3.5580 -9.7910 3.1498 20 6 -4.3979 -10.8842 3.0493 21 6 -3.9294 -12.0685 2.5112 22 6 -2.6199 -12.1611 2.0791 23 6 -2.1093 -13.4522 1.4932 24 7 -2.3294 -13.4519 0.0447 25 6 -3.4391 -13.9165 -0.6082 26 6 -3.2267 -13.7228 -1.9238 27 7 -2.0164 -13.1637 -2.0708 28 6 -1.4731 -12.9985 -0.8959 29 6 -1.7785 -11.0690 2.1841 30 6 -0.6277 -3.7548 -0.4238 31 6 0.0421 -2.5702 -0.5134 32 1 -0.4850 0.8400 0.0004 33 1 2.8336 -3.4200 1.2624 34 1 1.6080 -5.5286 1.4182 35 1 -1.3037 -6.3349 -0.3757 36 1 -2.0078 -8.1645 0.8955 37 1 -1.6264 -8.0891 3.6927 38 1 -0.3039 -9.0378 2.9721 39 1 -3.9252 -8.8645 3.5660 40 1 -5.4211 -10.8119 3.3870 41 1 -4.5868 -12.9215 2.4288 42 1 -1.0431 -13.5477 1.6985 43 1 -2.6423 -14.2906 1.9415 44 1 -4.3172 -14.3526 -0.1551 45 1 -3.9092 -13.9776 -2.7211 46 1 -0.4999 -12.5698 -0.7071 47 1 -0.7553 -11.1411 1.8461 48 1 -1.5943 -3.8639 -0.8930 49 1 -0.3929 -1.7418 -1.0527 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076084339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = 70.102075 kcal Electronic energy + Delta-G solvation = -31568.467220 eV Core-core repulsion = 27267.634970 eV Total energy + Delta-G solvation = -4300.832250 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.90244 -41.48133 -40.43749 -39.20798 -36.57478 -36.00033 -35.23744 -34.65641 -32.40412 -32.01328 -31.45110 -30.58115 -30.26985 -27.68563 -27.26169 -26.25003 -23.50390 -23.23424 -22.72731 -22.41160 -22.02780 -21.69721 -21.41800 -19.51949 -19.12725 -18.47117 -18.13950 -17.45050 -17.04649 -16.88603 -16.54448 -16.26702 -16.22110 -15.70421 -15.59943 -15.23783 -15.05858 -14.83832 -14.82597 -14.51183 -14.23688 -14.12131 -14.01613 -13.82889 -13.82083 -13.56588 -13.39566 -13.21008 -13.12349 -12.83501 -12.75752 -12.47124 -12.28023 -12.01125 -11.83814 -11.39502 -11.25200 -11.05292 -10.91032 -10.66571 -10.57234 -10.14366 -9.88276 -9.83406 -9.44884 -9.39242 -8.67996 -8.48217 -6.30657 0.13427 0.30703 0.86352 1.16099 1.20612 1.40132 1.49865 1.52579 1.77560 2.04583 2.19156 2.26061 2.28348 2.81440 2.84036 3.41932 3.51177 3.64096 3.70307 3.79292 3.92577 4.03770 4.11699 4.15831 4.30704 4.40159 4.40884 4.53528 4.54082 4.60317 4.64632 4.68863 4.82483 4.93773 4.94900 5.03979 5.14044 5.16052 5.30207 5.34004 5.40297 5.44298 5.45922 5.51835 5.56827 5.70363 5.81938 5.88469 5.94996 6.04405 6.12245 6.25111 6.32144 6.41437 6.69982 6.98697 7.02757 7.11336 7.21041 7.62856 8.44458 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.001506 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.055864 B =18592.064919 C =19467.112417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.098 4.098 12 C 0.041 3.959 13 N -0.660 5.660 14 C 0.694 3.306 15 O -0.622 6.622 16 N -0.725 5.725 17 C 0.183 3.817 18 C -0.112 4.112 19 C -0.098 4.098 20 C -0.126 4.126 21 C -0.089 4.089 22 C -0.121 4.121 23 C 0.147 3.853 24 N -0.449 5.449 25 C -0.042 4.042 26 C -0.066 4.066 27 N -0.543 5.543 28 C 0.173 3.827 29 C -0.084 4.084 30 C -0.121 4.121 31 C -0.157 4.157 32 H 0.284 0.716 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.413 0.587 36 H 0.408 0.592 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.204 0.796 45 H 0.174 0.826 46 H 0.218 0.782 47 H 0.132 0.868 48 H 0.123 0.877 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.795 -29.575 4.694 32.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.530 4.530 8 H 0.091 0.909 9 C 0.062 3.938 10 C -0.238 4.238 11 C -0.118 4.118 12 C -0.053 4.053 13 N -0.307 5.307 14 C 0.395 3.605 15 O -0.503 6.503 16 N -0.382 5.382 17 C 0.060 3.940 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.144 4.144 21 C -0.108 4.108 22 C -0.122 4.122 23 C 0.026 3.974 24 N -0.131 5.131 25 C -0.176 4.176 26 C -0.213 4.213 27 N -0.262 5.262 28 C -0.110 4.110 29 C -0.103 4.103 30 C -0.142 4.142 31 C -0.177 4.177 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.249 0.751 36 H 0.244 0.756 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.221 0.779 45 H 0.191 0.809 46 H 0.234 0.766 47 H 0.150 0.850 48 H 0.141 0.859 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.968 -28.956 4.934 31.718 hybrid contribution -0.404 0.700 0.177 0.827 sum -12.372 -28.256 5.111 31.266 Atomic orbital electron populations 1.69826 1.08553 1.29944 1.38767 1.26736 0.95826 1.04286 0.91632 0.85157 0.78488 0.75607 0.79812 1.18238 1.19260 1.19026 1.19683 0.94823 0.91326 1.47124 0.90933 1.18035 0.93418 0.92744 0.89593 1.20925 1.01582 0.95439 1.05878 1.20526 0.93702 0.97502 1.00085 1.17088 0.93029 0.86346 1.08809 1.41903 1.51507 1.20783 1.16529 1.16162 0.81180 0.80788 0.82383 1.90892 1.44253 1.72864 1.42250 1.44973 1.47148 1.24683 1.21394 1.19982 0.98770 0.89092 0.86186 1.19703 0.94804 0.94550 1.02196 1.21352 0.92833 0.99537 0.97968 1.21418 1.00728 0.92693 0.99544 1.21402 0.94734 0.98611 0.96004 1.20024 0.94874 0.95661 1.01624 1.20981 1.04883 0.96054 0.75501 1.45759 1.14524 1.44893 1.07917 1.23161 0.94098 1.07046 0.93278 1.22642 0.95718 1.06324 0.96584 1.70251 1.10287 1.19722 1.25953 1.25345 0.99103 1.03429 0.83110 1.21121 1.00375 0.91844 0.96932 1.20528 0.99332 0.92058 1.02267 1.21157 0.97503 0.96334 1.02755 0.90535 0.88593 0.87364 0.75050 0.75615 0.91864 0.91288 0.85555 0.83802 0.83414 0.86277 0.85470 0.77912 0.80900 0.76600 0.85032 0.85917 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.36 10.60 21.82 0.23 -45.13 16 2 C 0.03 1.40 5.42 85.23 0.46 1.86 16 3 Si 0.99 39.92 29.56 68.60 2.03 41.95 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.50 -27.98 9.02 23.39 0.21 -27.77 16 8 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 9 C 0.06 3.64 5.55 -21.28 -0.12 3.53 16 10 C -0.22 -11.67 9.74 22.48 0.22 -11.45 16 11 C -0.10 -4.87 8.61 22.13 0.19 -4.68 16 12 C 0.04 1.86 6.31 38.56 0.24 2.10 16 13 N -0.66 -22.73 5.31 -316.79 -1.68 -24.41 16 14 C 0.69 24.00 8.40 179.06 1.50 25.50 16 15 O -0.62 -27.53 13.76 -3.99 -0.05 -27.59 16 16 N -0.73 -16.99 5.55 -482.31 -2.68 -19.67 16 17 C 0.18 3.76 5.80 85.63 0.50 4.25 16 18 C -0.11 -1.63 5.25 -19.87 -0.10 -1.74 16 19 C -0.10 -1.28 9.70 22.27 0.22 -1.06 16 20 C -0.13 -1.18 10.05 22.27 0.22 -0.96 16 21 C -0.09 -0.64 9.70 22.27 0.22 -0.42 16 22 C -0.12 -0.96 5.46 -19.87 -0.11 -1.07 16 23 C 0.15 0.61 6.28 85.63 0.54 1.15 16 24 N -0.45 -4.64 2.73 -533.15 -1.46 -6.10 16 25 C -0.04 -0.47 11.58 83.08 0.96 0.50 16 26 C -0.07 -1.13 11.87 83.52 0.99 -0.14 16 27 N -0.54 -12.05 11.25 -200.31 -2.25 -14.30 16 28 C 0.17 2.71 12.56 180.26 2.26 4.98 16 29 C -0.08 -0.96 9.36 22.27 0.21 -0.75 16 30 C -0.12 -5.59 9.90 22.14 0.22 -5.37 16 31 C -0.16 -8.41 8.62 22.48 0.19 -8.21 16 32 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 33 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.11 5.36 6.22 -2.91 -0.02 5.35 16 35 H 0.41 10.78 8.83 -92.71 -0.82 9.96 16 36 H 0.41 7.38 8.48 -92.71 -0.79 6.60 16 37 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 38 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 39 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 41 H 0.15 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.12 0.17 8.09 -2.39 -0.02 0.15 16 43 H 0.13 -0.08 8.09 -2.39 -0.02 -0.10 16 44 H 0.20 0.70 8.06 -2.91 -0.02 0.67 16 45 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 49 H 0.12 6.59 6.13 -2.91 -0.02 6.57 16 Total: -1.00 -78.82 419.92 2.56 -76.26 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.60 Total: 38.75 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 9.03 Total: -19.76 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -7.84 Total: -109.61 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -78.82 2.56 -76.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.363 kcal (2) G-P(sol) polarization free energy of solvation -78.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds