Wall clock time and date at job start Tue Mar 31 2020 05:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31776 * 122.74920 * 2 1 4 4 C 1.29029 * 117.12655 * 179.73192 * 3 2 1 5 5 C 1.50705 * 124.91724 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46920 * 89.99875 * 5 4 3 7 7 C 1.34782 * 119.99509 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00171 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99935 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00252 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47456 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46881 * 64.99843 * 11 10 9 13 13 C 1.35677 * 116.99633 * 179.97438 * 12 11 10 14 14 C 1.39308 * 119.81742 * 359.72815 * 13 12 11 15 15 C 1.36437 * 120.18239 * 179.75688 * 14 13 12 16 16 C 1.40836 * 119.81329 * 0.51315 * 15 14 13 17 17 C 1.41209 * 120.18288 * 179.71609 * 16 15 14 18 18 H 1.07994 * 120.00664 * 204.57174 * 17 16 15 19 19 C 1.39894 * 119.99731 * 24.56951 * 17 16 15 20 20 N 1.30884 * 120.00126 * 17.92244 * 19 17 16 21 21 Si 1.86799 * 119.99869 * 197.92369 * 19 17 16 22 22 H 1.48494 * 109.47543 * 60.00143 * 21 19 17 23 23 H 1.48507 * 109.47248 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47295 * 299.99739 * 21 19 17 25 25 C 1.40833 * 119.63809 * 359.74477 * 16 15 14 26 26 C 1.36434 * 119.81328 * 359.97438 * 25 16 15 27 27 S 1.70970 * 110.16533 * 0.02562 * 4 3 2 28 28 C 1.33644 * 122.74780 * 179.71466 * 2 1 3 29 29 C 1.50695 * 126.04039 * 0.24304 * 28 2 1 30 30 H 1.08993 * 109.47462 * 90.02296 * 1 2 3 31 31 H 1.09005 * 109.46990 * 210.02067 * 1 2 3 32 32 H 1.09000 * 109.46968 * 330.01929 * 1 2 3 33 33 H 1.09001 * 109.46569 * 209.99969 * 5 4 3 34 34 H 1.08996 * 109.46802 * 329.99552 * 5 4 3 35 35 H 0.96996 * 120.00440 * 359.97438 * 6 5 4 36 36 H 0.97004 * 119.99658 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47332 * 300.00039 * 10 9 7 38 38 H 1.08995 * 109.47052 * 59.99929 * 10 9 7 39 39 H 1.08998 * 109.47185 * 185.00257 * 11 10 9 40 40 H 1.08999 * 109.46561 * 304.99961 * 11 10 9 41 41 H 1.08002 * 119.91224 * 0.02562 * 14 13 12 42 42 H 1.08006 * 120.09193 * 180.25099 * 15 14 13 43 43 H 0.96999 * 119.99857 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.09332 * 179.97438 * 25 16 15 45 45 H 1.08003 * 119.90979 * 179.97438 * 26 25 16 46 46 H 1.08998 * 109.47128 * 90.00238 * 29 28 2 47 47 H 1.09005 * 109.47268 * 210.00820 * 29 28 2 48 48 H 1.08997 * 109.47059 * 330.00326 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 0.0054 5 6 4.4835 2.1272 0.0069 6 7 4.7953 2.5011 1.3886 7 6 5.6553 3.5090 1.6361 8 8 6.1725 4.1075 0.7127 9 7 5.9426 3.8528 2.9072 10 6 6.8777 4.9479 3.1763 11 6 7.0263 5.1319 4.6880 12 8 7.6346 3.9682 5.2519 13 6 7.8398 3.9691 6.5931 14 6 7.4656 5.0769 7.3504 15 6 7.6640 5.0837 8.7002 16 6 8.2589 3.9711 9.3261 17 6 8.4734 3.9723 10.7218 18 1 9.2473 3.3525 11.1499 19 6 7.6833 4.7766 11.5502 20 7 6.5443 5.2486 11.1109 21 14 8.2540 5.1768 13.2833 22 1 9.5542 5.8916 13.2237 23 1 7.2450 6.0385 13.9501 24 1 8.4161 3.9179 14.0542 25 6 8.6391 2.8575 8.5524 26 6 8.4285 2.8643 7.2044 27 16 3.9333 -0.6730 0.0105 28 6 2.2300 -1.1240 0.0056 29 6 1.6847 -2.5289 0.0074 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 5.3980 1.8237 -0.5027 34 1 4.0454 2.9806 -0.5105 35 1 4.3824 2.0239 2.1252 36 1 5.5302 3.3751 3.6438 37 1 7.8489 4.7116 2.7415 38 1 6.4961 5.8683 2.7345 39 1 7.6514 6.0020 4.8884 40 1 6.0430 5.2805 5.1342 41 1 7.0132 5.9309 6.8683 42 1 7.3696 5.9417 9.2865 43 1 5.9964 5.8059 11.6854 44 1 9.0962 2.0006 9.0247 45 1 8.7199 2.0113 6.6095 46 1 1.5570 -2.8704 -1.0198 47 1 2.3811 -3.1882 0.5257 48 1 0.7218 -2.5442 0.5178 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076088412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:07 Heat of formation + Delta-G solvation = -11.048250 kcal Electronic energy + Delta-G solvation = -29377.101446 eV Core-core repulsion = 25137.787022 eV Total energy + Delta-G solvation = -4239.314424 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.53093 -39.94628 -38.83981 -36.66724 -35.60711 -34.62704 -33.45968 -33.30008 -30.52340 -29.99439 -29.65119 -28.91453 -27.84097 -25.40733 -24.85302 -23.38760 -22.66699 -21.09122 -21.05555 -20.29596 -19.40721 -18.83030 -18.13357 -17.41274 -17.12447 -16.77407 -15.77674 -15.63195 -15.44243 -15.30251 -14.99001 -14.62322 -14.29719 -14.08152 -13.99490 -13.89966 -13.70127 -13.46647 -13.32255 -13.06453 -12.96648 -12.82002 -12.67717 -12.42061 -12.32144 -12.24547 -11.92473 -11.51251 -11.46105 -11.23137 -11.07912 -11.01777 -10.65479 -10.36884 -10.06609 -9.96758 -9.84507 -9.65051 -9.46962 -9.40988 -9.08882 -9.04961 -8.91800 -7.69911 -7.06558 -6.76938 -4.29329 0.15192 0.86089 1.28882 2.17567 2.72821 2.74658 2.92737 3.05249 3.07833 3.12676 3.19290 3.54473 3.91774 3.97038 4.18498 4.39522 4.46155 4.57349 4.57717 4.91438 4.98749 5.00057 5.03068 5.18044 5.26034 5.28640 5.35869 5.37271 5.50690 5.58614 5.63798 5.67629 5.85411 5.91617 6.07008 6.12540 6.23319 6.43813 6.67174 6.75003 6.85024 7.02768 7.23932 7.30211 7.36404 7.51444 7.86294 7.88117 7.96082 8.10816 8.38795 8.48511 8.60412 8.86187 8.94769 10.17810 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.001451 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.890579 B =19298.267766 C =20466.709348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.448 5.448 4 C 0.020 3.980 5 C 0.222 3.778 6 N -0.744 5.744 7 C 0.709 3.291 8 O -0.594 6.594 9 N -0.735 5.735 10 C 0.144 3.856 11 C 0.054 3.946 12 O -0.327 6.327 13 C -0.012 4.012 14 C -0.173 4.173 15 C -0.134 4.134 16 C 0.088 3.912 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.799 5.799 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.197 4.197 26 C -0.111 4.111 27 S 0.147 5.853 28 C -0.222 4.222 29 C -0.077 4.077 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.399 0.601 36 H 0.403 0.597 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.280 0.720 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 -10.356 -20.500 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 N -0.163 5.163 4 C -0.258 4.258 5 C 0.095 3.905 6 N -0.402 5.402 7 C 0.409 3.591 8 O -0.472 6.472 9 N -0.391 5.391 10 C 0.020 3.980 11 C -0.023 4.023 12 O -0.243 6.243 13 C -0.055 4.055 14 C -0.192 4.192 15 C -0.154 4.154 16 C 0.086 3.914 17 C -0.493 4.493 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.426 5.426 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.217 4.217 26 C -0.130 4.130 27 S 0.403 5.597 28 C -0.343 4.343 29 C -0.136 4.136 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.233 0.767 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.814 -9.776 -21.401 25.493 hybrid contribution -1.254 0.038 1.670 2.089 sum -11.068 -9.738 -19.730 24.630 Atomic orbital electron populations 1.20378 0.86922 1.03502 1.02973 1.20213 0.98315 0.86060 1.02979 1.66132 1.04399 1.31804 1.14003 1.26789 0.94147 0.98280 1.06586 1.19473 0.94554 0.92743 0.83750 1.44989 1.49456 1.37835 1.07893 1.15786 0.79509 0.80140 0.83656 1.90926 1.56587 1.56264 1.43427 1.45059 1.49415 1.38663 1.05918 1.21305 0.93373 0.89435 0.93868 1.22732 0.98156 0.89613 0.91787 1.85833 1.78447 1.38923 1.21121 1.18531 1.08902 0.97472 0.80634 1.20613 1.05892 0.96963 0.95711 1.20942 1.03134 0.99203 0.92088 1.17602 0.90457 0.90036 0.93343 1.19448 1.15969 1.22376 0.91507 0.90504 1.25880 0.93544 0.93955 1.00801 1.69827 1.08434 1.26185 1.38106 0.86379 0.79546 0.79327 0.81528 1.18862 1.20413 1.19051 1.20591 1.09808 0.98640 0.92666 1.19600 1.02877 0.96042 0.94491 1.84137 1.06188 1.02145 1.67267 1.25874 0.95442 1.01229 1.11776 1.20288 1.01393 0.88828 1.03065 0.90595 0.90585 0.90466 0.89262 0.88530 0.76685 0.76293 0.90613 0.90018 0.91180 0.92335 0.88732 0.86136 0.90903 0.88259 0.88599 0.90334 0.90886 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.06 36.01 0.36 -0.11 16 2 C 0.06 0.50 6.74 -84.22 -0.57 -0.07 16 3 N -0.45 -4.73 10.53 -8.06 -0.08 -4.81 16 4 C 0.02 0.19 6.76 -13.45 -0.09 0.10 16 5 C 0.22 2.17 6.25 -5.19 -0.03 2.13 16 6 N -0.74 -7.84 5.55 -66.41 -0.37 -8.21 16 7 C 0.71 9.51 8.57 -86.91 -0.74 8.77 16 8 O -0.59 -9.93 16.34 5.29 0.09 -9.84 16 9 N -0.74 -9.23 5.51 -65.23 -0.36 -9.59 16 10 C 0.14 1.86 6.06 -4.04 -0.02 1.84 16 11 C 0.05 0.78 4.86 37.16 0.18 0.96 16 12 O -0.33 -6.10 10.07 -18.73 -0.19 -6.29 16 13 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 14 C -0.17 -3.89 8.96 -39.83 -0.36 -4.25 16 15 C -0.13 -3.40 8.64 -39.25 -0.34 -3.73 16 16 C 0.09 2.30 5.57 -106.81 -0.60 1.70 16 17 C -0.46 -12.09 9.04 -37.83 -0.34 -12.43 16 18 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 19 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 20 N -0.80 -20.34 10.96 55.55 0.61 -19.73 16 21 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.20 -4.75 9.74 -39.25 -0.38 -5.14 16 26 C -0.11 -2.50 9.92 -39.83 -0.40 -2.90 16 27 S 0.15 1.14 23.18 -107.50 -2.49 -1.35 16 28 C -0.22 -1.66 6.59 -35.92 -0.24 -1.90 16 29 C -0.08 -0.34 10.10 36.00 0.36 0.02 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.32 6.71 -51.93 -0.35 -0.03 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.63 8.48 -40.82 -0.35 3.28 16 36 H 0.40 4.64 8.49 -40.82 -0.35 4.29 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 40 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 41 H 0.09 1.87 6.27 -52.49 -0.33 1.54 16 42 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 43 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 44 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.27 6.75 -51.93 -0.35 -0.08 16 LS Contribution 418.38 15.07 6.30 6.30 Total: -1.00 -31.41 418.38 -11.69 -43.10 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.61 Total: 10.79 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.55 Total: -13.78 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.20 Total: -42.34 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.10 Total: -16.13 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.49 Total: -1.35 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.41 -11.69 -43.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.052 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds