Wall clock time and date at job start Tue Mar 31 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31776 * 122.74920 * 2 1 4 4 C 1.29029 * 117.12655 * 179.73192 * 3 2 1 5 5 C 1.50705 * 124.91724 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46920 * 89.99875 * 5 4 3 7 7 C 1.34782 * 119.99509 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00171 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99935 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00252 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47456 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46881 * 64.99843 * 11 10 9 13 13 C 1.35677 * 116.99633 * 179.97438 * 12 11 10 14 14 C 1.39308 * 119.81742 * 359.72815 * 13 12 11 15 15 C 1.36437 * 120.18239 * 179.75688 * 14 13 12 16 16 C 1.40836 * 119.81329 * 0.51315 * 15 14 13 17 17 C 1.41209 * 120.18288 * 179.71609 * 16 15 14 18 18 H 1.07994 * 120.00664 * 204.57174 * 17 16 15 19 19 C 1.39894 * 119.99731 * 24.56951 * 17 16 15 20 20 N 1.30884 * 120.00126 * 17.92244 * 19 17 16 21 21 Si 1.86799 * 119.99869 * 197.92369 * 19 17 16 22 22 H 1.48494 * 109.47543 * 60.00143 * 21 19 17 23 23 H 1.48507 * 109.47248 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47295 * 299.99739 * 21 19 17 25 25 C 1.40833 * 119.63809 * 359.74477 * 16 15 14 26 26 C 1.36434 * 119.81328 * 359.97438 * 25 16 15 27 27 S 1.70970 * 110.16533 * 0.02562 * 4 3 2 28 28 C 1.33644 * 122.74780 * 179.71466 * 2 1 3 29 29 C 1.50695 * 126.04039 * 0.24304 * 28 2 1 30 30 H 1.08993 * 109.47462 * 90.02296 * 1 2 3 31 31 H 1.09005 * 109.46990 * 210.02067 * 1 2 3 32 32 H 1.09000 * 109.46968 * 330.01929 * 1 2 3 33 33 H 1.09001 * 109.46569 * 209.99969 * 5 4 3 34 34 H 1.08996 * 109.46802 * 329.99552 * 5 4 3 35 35 H 0.96996 * 120.00440 * 359.97438 * 6 5 4 36 36 H 0.97004 * 119.99658 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47332 * 300.00039 * 10 9 7 38 38 H 1.08995 * 109.47052 * 59.99929 * 10 9 7 39 39 H 1.08998 * 109.47185 * 185.00257 * 11 10 9 40 40 H 1.08999 * 109.46561 * 304.99961 * 11 10 9 41 41 H 1.08002 * 119.91224 * 0.02562 * 14 13 12 42 42 H 1.08006 * 120.09193 * 180.25099 * 15 14 13 43 43 H 0.96999 * 119.99857 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.09332 * 179.97438 * 25 16 15 45 45 H 1.08003 * 119.90979 * 179.97438 * 26 25 16 46 46 H 1.08998 * 109.47128 * 90.00238 * 29 28 2 47 47 H 1.09005 * 109.47268 * 210.00820 * 29 28 2 48 48 H 1.08997 * 109.47059 * 330.00326 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 0.0054 5 6 4.4835 2.1272 0.0069 6 7 4.7953 2.5011 1.3886 7 6 5.6553 3.5090 1.6361 8 8 6.1725 4.1075 0.7127 9 7 5.9426 3.8528 2.9072 10 6 6.8777 4.9479 3.1763 11 6 7.0263 5.1319 4.6880 12 8 7.6346 3.9682 5.2519 13 6 7.8398 3.9691 6.5931 14 6 7.4656 5.0769 7.3504 15 6 7.6640 5.0837 8.7002 16 6 8.2589 3.9711 9.3261 17 6 8.4734 3.9723 10.7218 18 1 9.2473 3.3525 11.1499 19 6 7.6833 4.7766 11.5502 20 7 6.5443 5.2486 11.1109 21 14 8.2540 5.1768 13.2833 22 1 9.5542 5.8916 13.2237 23 1 7.2450 6.0385 13.9501 24 1 8.4161 3.9179 14.0542 25 6 8.6391 2.8575 8.5524 26 6 8.4285 2.8643 7.2044 27 16 3.9333 -0.6730 0.0105 28 6 2.2300 -1.1240 0.0056 29 6 1.6847 -2.5289 0.0074 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 5.3980 1.8237 -0.5027 34 1 4.0454 2.9806 -0.5105 35 1 4.3824 2.0239 2.1252 36 1 5.5302 3.3751 3.6438 37 1 7.8489 4.7116 2.7415 38 1 6.4961 5.8683 2.7345 39 1 7.6514 6.0020 4.8884 40 1 6.0430 5.2805 5.1342 41 1 7.0132 5.9309 6.8683 42 1 7.3696 5.9417 9.2865 43 1 5.9964 5.8059 11.6854 44 1 9.0962 2.0006 9.0247 45 1 8.7199 2.0113 6.6095 46 1 1.5570 -2.8704 -1.0198 47 1 2.3811 -3.1882 0.5257 48 1 0.7218 -2.5442 0.5178 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076088412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:06 Heat of formation + Delta-G solvation = -30.766884 kcal Electronic energy + Delta-G solvation = -29377.956510 eV Core-core repulsion = 25137.787022 eV Total energy + Delta-G solvation = -4240.169488 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.33132 -40.88351 -40.41879 -38.29860 -36.53358 -35.83376 -35.10397 -34.06932 -31.66224 -31.44622 -30.82764 -30.28728 -28.74705 -26.67074 -25.92823 -24.49923 -23.58201 -22.84826 -22.16222 -21.88175 -20.09172 -19.67206 -19.25353 -18.85337 -18.72602 -17.77476 -17.12588 -16.80026 -16.52414 -16.27051 -15.96878 -15.93019 -15.73475 -15.15448 -15.09637 -14.96103 -14.71174 -14.35662 -14.22893 -14.04477 -13.82888 -13.76575 -13.68971 -13.66245 -13.47379 -13.36022 -13.11016 -12.83359 -12.79333 -12.73866 -12.48811 -12.27834 -12.04038 -11.67714 -11.62462 -11.46550 -11.20014 -10.85269 -10.74579 -10.49590 -10.25399 -9.88826 -9.68135 -9.54059 -8.89479 -8.59312 -6.21286 -0.48449 0.25262 0.66816 0.96174 1.07177 1.40100 1.43223 1.50210 1.55086 1.88678 2.06613 2.23091 2.56110 2.73858 2.89024 3.24468 3.72406 3.77113 3.85999 3.97975 4.09676 4.14957 4.27762 4.32176 4.41767 4.46789 4.49811 4.57724 4.58516 4.66337 4.77878 4.79948 4.88188 4.95101 4.99472 5.04386 5.04674 5.16618 5.23013 5.38055 5.38767 5.40093 5.54682 5.68350 5.82066 5.99781 6.08162 6.25721 6.57184 6.66869 6.80347 6.92283 6.96709 7.11534 7.45232 8.37020 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.001451 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.890579 B =19298.267766 C =20466.709348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.032 3.968 3 N -0.474 5.474 4 C 0.003 3.997 5 C 0.225 3.775 6 N -0.732 5.732 7 C 0.708 3.292 8 O -0.628 6.628 9 N -0.732 5.732 10 C 0.152 3.848 11 C 0.051 3.949 12 O -0.329 6.329 13 C 0.003 3.997 14 C -0.175 4.175 15 C -0.155 4.155 16 C 0.053 3.947 17 C -0.501 4.501 18 H 0.074 0.926 19 C 0.035 3.965 20 N -0.831 5.831 21 Si 0.979 3.021 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.206 4.206 26 C -0.120 4.120 27 S 0.166 5.834 28 C -0.215 4.215 29 C -0.079 4.079 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.407 0.593 36 H 0.409 0.591 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.287 0.713 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 -11.398 -21.022 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 N -0.190 5.190 4 C -0.274 4.274 5 C 0.098 3.902 6 N -0.390 5.390 7 C 0.408 3.592 8 O -0.510 6.510 9 N -0.388 5.388 10 C 0.028 3.972 11 C -0.025 4.025 12 O -0.245 6.245 13 C -0.041 4.041 14 C -0.194 4.194 15 C -0.175 4.175 16 C 0.051 3.949 17 C -0.531 4.531 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.457 5.457 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.226 4.226 26 C -0.139 4.139 27 S 0.421 5.579 28 C -0.337 4.337 29 C -0.138 4.138 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.137 0.863 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.522 -10.840 -21.931 26.631 hybrid contribution -1.098 0.278 1.618 1.975 sum -11.620 -10.562 -20.313 25.675 Atomic orbital electron populations 1.20452 0.85389 1.04042 1.03682 1.20627 0.99494 0.86006 1.03867 1.66128 1.05046 1.33262 1.14550 1.26627 0.93935 0.98980 1.07883 1.19436 0.94908 0.92769 0.83097 1.44905 1.48483 1.36919 1.08656 1.15882 0.79597 0.80332 0.83384 1.90902 1.58030 1.57596 1.44433 1.45016 1.49241 1.38630 1.05890 1.21241 0.93252 0.90250 0.92496 1.22975 0.98439 0.88559 0.92479 1.85841 1.78538 1.40945 1.19142 1.18606 1.06847 0.96626 0.81972 1.20837 1.05484 0.98186 0.94847 1.20911 1.04512 0.98813 0.93249 1.17960 0.91766 0.91109 0.94068 1.19691 1.16996 1.24164 0.92205 0.90737 1.26684 0.93188 0.93253 1.04766 1.69877 1.09300 1.26766 1.39801 0.85295 0.79066 0.79219 0.76383 1.18640 1.19356 1.18491 1.20781 1.09792 0.98465 0.93518 1.19874 1.02645 0.97159 0.94193 1.84024 1.06595 1.00638 1.66650 1.26320 0.95053 1.02389 1.09926 1.20457 1.02121 0.86939 1.04254 0.89779 0.88509 0.91444 0.88760 0.89628 0.75750 0.75599 0.91392 0.88433 0.90086 0.91461 0.86100 0.87700 0.90287 0.87485 0.86305 0.88946 0.90168 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.06 71.24 0.72 -0.11 16 2 C 0.03 0.52 6.74 41.52 0.28 0.80 16 3 N -0.47 -9.85 10.53 -179.40 -1.89 -11.74 16 4 C 0.00 0.05 6.76 88.52 0.60 0.65 16 5 C 0.23 4.37 6.25 85.64 0.54 4.91 16 6 N -0.73 -14.99 5.55 -482.30 -2.68 -17.67 16 7 C 0.71 18.42 8.57 179.05 1.53 19.95 16 8 O -0.63 -20.74 16.34 -3.99 -0.07 -20.81 16 9 N -0.73 -17.30 5.51 -478.54 -2.64 -19.93 16 10 C 0.15 3.63 6.06 86.38 0.52 4.16 16 11 C 0.05 1.37 4.86 71.98 0.35 1.72 16 12 O -0.33 -11.55 10.07 -89.94 -0.91 -12.46 16 13 C 0.00 0.14 6.71 22.79 0.15 0.29 16 14 C -0.17 -7.73 8.96 22.11 0.20 -7.53 16 15 C -0.16 -7.98 8.64 22.48 0.19 -7.78 16 16 C 0.05 2.84 5.57 -21.28 -0.12 2.72 16 17 C -0.50 -26.82 9.04 23.40 0.21 -26.61 16 18 H 0.07 3.85 7.91 -2.91 -0.02 3.82 16 19 C 0.03 1.75 5.13 85.24 0.44 2.19 16 20 N -0.83 -43.02 10.96 21.82 0.24 -42.78 16 21 Si 0.98 37.98 29.60 68.60 2.03 40.01 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 25 C -0.21 -9.98 9.74 22.48 0.22 -9.76 16 26 C -0.12 -5.27 9.92 22.11 0.22 -5.05 16 27 S 0.17 2.38 23.18 -56.49 -1.31 1.07 16 28 C -0.22 -2.86 6.59 24.64 0.16 -2.69 16 29 C -0.08 -0.50 10.10 71.23 0.72 0.22 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.59 6.71 -2.38 -0.02 0.57 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 7.06 8.48 -92.71 -0.79 6.27 16 36 H 0.41 8.71 8.49 -92.71 -0.79 7.93 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.06 7.63 -2.39 -0.02 2.04 16 40 H 0.07 1.74 7.66 -2.39 -0.02 1.72 16 41 H 0.12 4.58 6.27 -2.91 -0.02 4.56 16 42 H 0.11 5.64 6.16 -2.91 -0.02 5.62 16 43 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 44 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 46 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 47 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 48 H 0.10 0.35 6.75 -2.39 -0.02 0.34 16 Total: -1.00 -68.32 418.38 -0.83 -69.15 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.55 Total: 37.08 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 6.93 Total: -21.93 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -6.96 Total: -92.12 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.97 Total: -33.26 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.31 Total: 1.07 kcal Total: -68.32 -0.83 -69.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.385 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds