Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42894 * 114.00456 * 2 1 4 4 C 1.52996 * 109.47558 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47075 * 65.00044 * 4 3 2 6 6 C 1.46848 * 111.00150 * 66.05107 * 5 4 3 7 7 C 1.53029 * 109.52612 * 185.84100 * 6 5 4 8 8 C 1.53121 * 109.27785 * 300.81583 * 7 6 5 9 9 C 1.53120 * 109.15997 * 57.65764 * 8 7 6 10 10 H 1.09003 * 109.50757 * 62.32154 * 9 8 7 11 11 N 1.46501 * 109.50514 * 182.40607 * 9 8 7 12 12 C 1.34775 * 119.99813 * 274.99972 * 11 9 8 13 13 O 1.21374 * 119.99921 * 359.97438 * 12 11 9 14 14 C 1.49267 * 120.00112 * 180.02562 * 12 11 9 15 15 O 1.21396 * 119.99812 * 359.97438 * 14 12 11 16 16 N 1.34775 * 120.00112 * 180.02562 * 14 12 11 17 17 C 1.38945 * 120.00038 * 175.48524 * 16 14 12 18 18 C 1.39568 * 119.83887 * 36.02543 * 17 16 14 19 19 C 1.36324 * 120.16341 * 180.02562 * 18 17 16 20 20 C 1.40917 * 119.83302 * 359.97438 * 19 18 17 21 21 C 1.41075 * 120.15403 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99149 * 204.71864 * 21 20 19 23 23 C 1.39976 * 120.00284 * 24.71814 * 21 20 19 24 24 N 1.30824 * 120.00214 * 15.54948 * 23 21 20 25 25 Si 1.86801 * 120.00090 * 195.54599 * 23 21 20 26 26 H 1.48503 * 109.46748 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47004 * 119.99762 * 25 23 21 28 28 H 1.48495 * 109.47230 * 240.00205 * 25 23 21 29 29 C 1.40908 * 119.68447 * 0.28007 * 20 19 18 30 30 C 1.36332 * 119.83197 * 359.45638 * 29 20 19 31 31 C 1.46855 * 111.00229 * 190.25862 * 5 4 3 32 32 H 1.09003 * 109.47268 * 300.00201 * 1 2 3 33 33 H 1.09005 * 109.47296 * 59.99443 * 1 2 3 34 34 H 1.08999 * 109.47868 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.47263 * 59.99987 * 3 2 1 36 36 H 1.09002 * 109.47625 * 300.00429 * 3 2 1 37 37 H 1.09006 * 109.47242 * 305.00261 * 4 3 2 38 38 H 1.09002 * 109.47873 * 185.00576 * 4 3 2 39 39 H 1.08998 * 109.46295 * 65.81682 * 6 5 4 40 40 H 1.09000 * 109.44781 * 305.85008 * 6 5 4 41 41 H 1.08995 * 109.50537 * 180.87798 * 7 6 5 42 42 H 1.09007 * 109.50411 * 60.75794 * 7 6 5 43 43 H 1.08988 * 109.52392 * 297.75067 * 8 7 6 44 44 H 1.09000 * 109.52219 * 177.55377 * 8 7 6 45 45 H 0.96994 * 119.99861 * 94.99728 * 11 9 8 46 46 H 0.97000 * 120.00240 * 355.47913 * 16 14 12 47 47 H 1.08004 * 119.91869 * 0.02562 * 18 17 16 48 48 H 1.08003 * 120.08565 * 180.02562 * 19 18 17 49 49 H 0.96999 * 120.00527 * 179.97438 * 24 23 21 50 50 H 1.07993 * 120.08564 * 179.72479 * 29 20 19 51 51 H 1.07994 * 119.91673 * 180.23353 * 30 29 20 52 52 H 1.09004 * 109.45879 * 54.14188 * 31 5 4 53 53 H 1.08997 * 109.45689 * 294.17635 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9768 0.5626 -1.2562 6 6 3.6951 1.4352 -2.4032 7 6 4.0326 0.6985 -3.7013 8 6 5.5118 0.3031 -3.6883 9 6 5.7891 -0.5652 -2.4580 10 1 5.2017 -1.4814 -2.5192 11 7 7.2144 -0.9004 -2.4069 12 6 7.6830 -1.9581 -3.0984 13 8 6.9242 -2.6331 -3.7630 14 6 9.1351 -2.2999 -3.0460 15 8 9.8939 -1.6250 -2.3809 16 7 9.6038 -3.3573 -3.7378 17 6 10.9679 -3.6203 -3.7651 18 6 11.7442 -3.3804 -2.6302 19 6 13.0832 -3.6356 -2.6498 20 6 13.6831 -4.1432 -3.8195 21 6 15.0680 -4.4102 -3.8470 22 1 15.5996 -4.4081 -4.7871 23 6 15.7531 -4.6778 -2.6561 24 7 15.0866 -4.9811 -1.5720 25 14 17.6191 -4.6019 -2.6146 26 1 18.1297 -4.2393 -3.9611 27 1 18.0511 -3.5780 -1.6297 28 1 18.1598 -5.9275 -2.2201 29 6 12.8939 -4.3778 -4.9631 30 6 11.5551 -4.1230 -4.9271 31 6 5.4006 0.2081 -1.1958 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3635 -1.0276 0.0005 35 1 1.6886 1.8463 0.8900 36 1 1.6886 1.8464 -0.8899 37 1 3.8514 0.5680 0.8409 38 1 3.9786 2.1763 0.0890 39 1 4.3010 2.3383 -2.3300 40 1 2.6391 1.7054 -2.4029 41 1 3.8381 1.3519 -4.5517 42 1 3.4171 -0.1975 -3.7819 43 1 6.1285 1.2008 -3.6470 44 1 5.7464 -0.2599 -4.5917 45 1 7.8206 -0.3611 -1.8756 46 1 8.9890 -3.9348 -4.2167 47 1 11.2829 -2.9918 -1.7343 48 1 13.6826 -3.4499 -1.7708 49 1 15.5613 -5.1670 -0.7468 50 1 13.3478 -4.7625 -5.8643 51 1 10.9484 -4.3059 -5.8016 52 1 5.5834 -0.4127 -0.3187 53 1 5.9985 1.1170 -1.1283 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078602759.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = -106.109290 kcal Electronic energy + Delta-G solvation = -33340.868787 eV Core-core repulsion = 28790.512430 eV Total energy + Delta-G solvation = -4550.356357 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.199 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.00189 -40.70056 -39.78029 -38.89529 -38.45696 -36.60966 -35.93748 -34.75254 -33.94362 -31.51363 -31.23867 -30.95137 -30.00355 -27.53150 -27.09710 -25.80775 -25.02373 -23.86892 -23.24996 -22.74358 -22.00095 -21.37712 -20.82110 -19.65657 -19.25878 -18.27008 -17.63727 -17.50636 -17.34503 -17.16041 -16.78497 -16.68556 -16.14461 -15.94405 -15.81203 -15.56615 -15.46299 -15.26819 -14.89183 -14.84137 -14.67245 -14.50211 -14.27548 -13.98617 -13.68594 -13.64820 -13.33250 -13.28322 -12.96044 -12.83455 -12.78886 -12.72093 -12.59993 -12.42946 -12.34697 -12.08781 -11.84910 -11.71554 -11.68044 -11.54979 -11.46257 -11.17264 -10.84840 -10.53763 -10.49581 -10.31517 -9.48540 -9.26932 -8.94330 -8.62866 -6.30847 0.18895 0.91097 1.14104 1.29979 1.39920 1.51074 1.55496 2.14559 2.20957 2.56338 2.72708 2.92300 3.04829 3.42364 3.66567 3.72520 3.75485 3.96138 4.01467 4.22923 4.24881 4.29669 4.40708 4.43671 4.45390 4.49004 4.55655 4.58206 4.61356 4.63198 4.72074 4.84176 4.90098 4.91258 4.91908 4.93569 5.04134 5.05349 5.11542 5.14613 5.17858 5.25074 5.36265 5.36498 5.63835 5.72556 5.96753 6.01325 6.04883 6.08168 6.10242 6.29181 6.39504 6.46487 6.65151 6.76031 6.89764 6.93025 7.10276 8.30775 Molecular weight = 375.20amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.001421 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.369136 B =19699.897672 C =20256.917238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.063 3.937 4 C 0.056 3.944 5 N -0.540 5.540 6 C 0.052 3.948 7 C -0.107 4.107 8 C -0.129 4.129 9 C 0.149 3.851 10 H 0.081 0.919 11 N -0.684 5.684 12 C 0.524 3.476 13 O -0.538 6.538 14 C 0.488 3.512 15 O -0.539 6.539 16 N -0.609 5.609 17 C -0.014 4.014 18 C -0.092 4.092 19 C -0.181 4.181 20 C 0.077 3.923 21 C -0.486 4.486 22 H 0.082 0.918 23 C 0.031 3.969 24 N -0.822 5.822 25 Si 0.985 3.015 26 H -0.255 1.255 27 H -0.267 1.267 28 H -0.265 1.265 29 C -0.224 4.224 30 C -0.091 4.091 31 C 0.058 3.942 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.418 0.582 46 H 0.420 0.580 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.289 0.711 50 H 0.112 0.888 51 H 0.131 0.869 52 H 0.081 0.919 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.573 14.894 2.689 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.014 4.014 4 C -0.071 4.071 5 N -0.266 5.266 6 C -0.075 4.075 7 C -0.146 4.146 8 C -0.168 4.168 9 C 0.045 3.955 10 H 0.099 0.901 11 N -0.337 5.337 12 C 0.304 3.696 13 O -0.415 6.415 14 C 0.270 3.730 15 O -0.417 6.417 16 N -0.254 5.254 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.201 4.201 20 C 0.074 3.926 21 C -0.515 4.515 22 H 0.100 0.900 23 C -0.184 4.184 24 N -0.447 5.447 25 Si 0.806 3.194 26 H -0.178 1.178 27 H -0.191 1.191 28 H -0.190 1.190 29 C -0.244 4.244 30 C -0.110 4.110 31 C -0.071 4.071 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.255 0.745 46 H 0.257 0.743 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.100 0.900 50 H 0.130 0.870 51 H 0.149 0.851 52 H 0.100 0.900 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.764 14.239 2.869 29.576 hybrid contribution 1.163 0.562 0.382 1.347 sum -24.600 14.801 3.251 28.893 Atomic orbital electron populations 1.22840 0.80368 1.03212 1.00520 1.87970 1.20488 1.28549 1.95456 1.22694 0.92875 0.84775 1.01067 1.22186 0.94234 0.98946 0.91772 1.61712 1.16275 1.44922 1.03686 1.22240 1.01885 0.93696 0.89714 1.21495 0.94344 1.01086 0.97652 1.21962 0.98185 0.99512 0.97103 1.21087 0.78933 0.99250 0.96209 0.90076 1.45708 1.10875 1.29015 1.48110 1.19741 0.87520 0.81743 0.80575 1.90744 1.58273 1.51239 1.41213 1.20409 0.89244 0.81561 0.81763 1.90745 1.58796 1.51386 1.40756 1.42538 1.06793 1.26814 1.49290 1.17238 0.82588 1.15236 0.95619 1.20572 0.94294 0.99923 0.96381 1.20953 0.94006 1.05141 1.00034 1.18066 0.94054 0.88540 0.91926 1.19903 0.93886 1.42846 0.94903 0.89960 1.26853 1.06140 0.91224 0.94163 1.69878 1.40335 1.32261 1.02263 0.85106 0.75619 0.78939 0.79749 1.17832 1.19135 1.18957 1.20804 0.93474 1.10609 0.99538 1.20402 0.94907 1.00388 0.95347 1.22152 0.89016 0.99242 0.96691 0.93242 0.93504 0.89608 0.91462 0.92370 0.90243 0.91342 0.93709 0.89443 0.89383 0.91857 0.90900 0.92685 0.74455 0.74262 0.87998 0.87777 0.90024 0.86961 0.85119 0.90012 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.70 10.65 -148.98 -1.59 -8.29 16 3 C 0.06 0.67 6.00 71.98 0.43 1.10 16 4 C 0.06 0.64 5.34 86.30 0.46 1.10 16 5 N -0.54 -7.91 4.60 -896.35 -4.13 -12.03 16 6 C 0.05 0.61 5.30 86.32 0.46 1.07 16 7 C -0.11 -1.48 6.09 30.64 0.19 -1.29 16 8 C -0.13 -2.27 5.58 30.68 0.17 -2.10 16 9 C 0.15 2.96 2.62 45.04 0.12 3.07 16 10 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 11 N -0.68 -15.90 5.07 -443.79 -2.25 -18.15 16 12 C 0.52 15.72 7.85 87.21 0.68 16.41 16 13 O -0.54 -17.65 16.14 -3.32 -0.05 -17.71 16 14 C 0.49 17.58 7.71 87.21 0.67 18.25 16 15 O -0.54 -22.12 13.93 -3.39 -0.05 -22.16 16 16 N -0.61 -22.59 5.28 -304.52 -1.61 -24.20 16 17 C -0.01 -0.61 6.29 38.66 0.24 -0.37 16 18 C -0.09 -4.63 8.60 22.14 0.19 -4.44 16 19 C -0.18 -9.95 8.64 22.48 0.19 -9.76 16 20 C 0.08 4.17 5.58 -21.27 -0.12 4.05 16 21 C -0.49 -26.01 9.05 23.39 0.21 -25.79 16 22 H 0.08 4.18 7.89 -2.91 -0.02 4.16 16 23 C 0.03 1.58 5.19 85.26 0.44 2.02 16 24 N -0.82 -43.27 10.82 21.83 0.24 -43.03 16 25 Si 0.99 37.94 29.59 68.60 2.03 39.97 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 27 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 28 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 29 C -0.22 -10.77 9.74 22.48 0.22 -10.55 16 30 C -0.09 -3.90 9.90 22.15 0.22 -3.68 16 31 C 0.06 0.89 4.93 86.32 0.43 1.31 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.06 0.51 6.23 -2.39 -0.01 0.50 16 37 H 0.08 1.02 7.98 -2.38 -0.02 1.00 16 38 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 39 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.87 6.13 -2.39 -0.01 0.85 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.42 8.81 8.07 -92.71 -0.75 8.06 16 46 H 0.42 13.38 8.29 -92.71 -0.77 12.61 16 47 H 0.10 5.13 6.27 -2.91 -0.02 5.11 16 48 H 0.10 6.01 6.07 -2.91 -0.02 5.99 16 49 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 50 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 51 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 52 H 0.08 1.31 8.01 -2.38 -0.02 1.30 16 53 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -67.37 429.31 -1.52 -68.89 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.57 Total: 44.78 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 6.46 Total: -8.07 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -7.75 Total: -97.42 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -1.69 Total: -48.16 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -67.37 -1.52 -68.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078602759.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.222 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds