Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 108.57579 * 2 1 4 4 O 1.42093 * 108.57757 * 228.97243 * 2 1 3 5 5 C 1.81402 * 101.91932 * 114.48252 * 2 1 3 6 6 C 1.50704 * 109.46648 * 180.02562 * 5 2 1 7 7 N 1.28870 * 124.76355 * 90.00697 * 6 5 2 8 8 C 1.32493 * 117.10960 * 179.97438 * 7 6 5 9 9 C 1.48379 * 122.94987 * 179.97438 * 8 7 6 10 10 C 1.35404 * 126.62984 * 174.50135 * 9 8 7 11 11 N 1.36818 * 109.73259 * 179.83238 * 10 9 8 12 12 C 1.46494 * 124.95910 * 180.14082 * 11 10 9 13 13 C 1.50692 * 109.47589 * 265.34978 * 12 11 10 14 14 H 1.08000 * 119.99954 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00299 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99845 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00303 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47342 * 59.99655 * 17 15 13 19 19 H 1.48495 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46810 * 299.99590 * 17 15 13 21 21 C 1.37760 * 110.08561 * 0.45005 * 11 10 9 22 22 C 1.39183 * 133.30632 * 179.73558 * 21 11 10 23 23 C 1.37746 * 119.77661 * 180.02562 * 22 21 11 24 24 C 1.38804 * 120.64964 * 0.02562 * 23 22 21 25 25 C 1.36679 * 120.49132 * 359.97004 * 24 23 22 26 26 C 1.39454 * 119.78366 * 0.03049 * 25 24 23 27 27 C 1.34792 * 114.09512 * 359.97438 * 8 7 6 28 28 S 1.70916 * 124.76341 * 269.95791 * 6 5 2 29 29 H 1.08999 * 109.47388 * 305.51153 * 1 2 3 30 30 H 1.08996 * 109.47169 * 65.51587 * 1 2 3 31 31 H 1.09002 * 109.46785 * 185.51358 * 1 2 3 32 32 H 1.09002 * 109.46689 * 60.00582 * 5 2 1 33 33 H 1.08991 * 109.47624 * 300.00127 * 5 2 1 34 34 H 1.08000 * 125.13731 * 359.97438 * 10 9 8 35 35 H 1.08999 * 109.46798 * 25.35085 * 12 11 10 36 36 H 1.09001 * 109.47268 * 145.34802 * 12 11 10 37 37 H 0.97003 * 120.00198 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.11110 * 0.04513 * 22 21 11 39 39 H 1.08000 * 119.67471 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.76177 * 180.02562 * 24 23 22 41 41 H 1.07993 * 120.11089 * 180.02562 * 25 24 23 42 42 H 1.08000 * 126.05696 * 179.74274 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6827 -0.8170 1.7957 7 7 4.4106 0.1067 2.3226 8 6 5.7124 -0.1251 2.4071 9 6 6.6693 0.8481 2.9894 10 6 7.9908 0.6499 3.2074 11 7 8.5428 1.7762 3.7539 12 6 9.9533 1.9271 4.1199 13 6 10.1319 1.5960 5.5790 14 1 9.2800 1.3021 6.1743 15 6 11.3831 1.6672 6.1541 16 7 12.4207 2.0236 5.4288 17 14 11.6046 1.2560 7.9627 18 1 11.1762 -0.1445 8.2081 19 1 13.0345 1.4079 8.3333 20 1 10.7793 2.1773 8.7844 21 6 7.5773 2.7454 3.9161 22 6 7.6020 4.0426 4.4199 23 6 6.4426 4.7855 4.4536 24 6 5.2474 4.2532 3.9901 25 6 5.2017 2.9815 3.4915 26 6 6.3641 2.2122 3.4483 27 6 6.0910 -1.3226 1.9177 28 16 4.6492 -2.1479 1.3313 29 1 -0.3634 0.5969 0.8365 30 1 -0.3633 0.4259 -0.9352 31 1 -0.3633 -1.0229 0.0987 32 1 1.7610 -1.7369 1.6665 33 1 1.7610 -0.1170 2.4043 34 1 8.5286 -0.2591 2.9818 35 1 10.5593 1.2508 3.5170 36 1 10.2676 2.9551 3.9395 37 1 13.3010 2.0733 5.8332 38 1 8.5271 4.4653 4.7829 39 1 6.4637 5.7921 4.8445 40 1 4.3468 4.8486 4.0229 41 1 4.2686 2.5736 3.1321 42 1 7.1001 -1.7061 1.8861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078869096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = 39.218758 kcal Electronic energy + Delta-G solvation = -28448.741131 eV Core-core repulsion = 24420.807562 eV Total energy + Delta-G solvation = -4027.933569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.070 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77553 -39.49995 -37.29301 -36.46622 -36.31678 -33.82957 -32.94414 -31.42659 -30.11937 -29.59799 -29.06443 -27.74874 -26.70120 -24.38008 -23.02054 -21.89369 -21.13112 -20.24934 -19.28345 -19.00976 -17.78240 -17.15362 -16.78540 -16.46277 -16.31437 -16.07119 -15.65202 -15.12866 -14.89509 -14.57894 -14.41137 -14.02571 -13.88700 -13.68218 -13.63887 -13.41852 -13.16920 -13.06063 -12.71845 -12.38588 -12.35348 -12.27172 -12.04362 -11.78505 -11.62104 -11.50705 -11.30218 -11.25963 -11.02967 -10.84791 -10.81944 -10.41546 -10.14329 -9.91729 -9.65479 -9.41099 -9.29495 -8.71750 -8.50530 -7.54974 -6.82861 -6.30505 -4.41947 -0.57244 0.65514 1.25615 1.67543 1.70915 2.19773 2.30064 2.63146 3.14475 3.18203 3.22683 3.25863 3.54944 3.62204 3.76741 3.80895 4.22120 4.24115 4.33115 4.54386 4.58961 4.73913 5.00834 5.08898 5.16885 5.17769 5.34779 5.42575 5.50516 5.62250 5.80206 6.00267 6.08674 6.23623 6.36759 6.43728 6.65489 6.72784 6.91677 7.07425 7.21128 7.32775 7.50341 7.59648 7.74478 7.80356 7.98785 8.05166 8.65582 9.26045 10.74196 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.002410 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.605717 B =11614.185139 C =12879.650747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.416 3.584 3 O -0.914 6.914 4 O -0.928 6.928 5 C -0.531 4.531 6 C 0.027 3.973 7 N -0.434 5.434 8 C 0.180 3.820 9 C -0.161 4.161 10 C 0.110 3.890 11 N -0.443 5.443 12 C 0.235 3.765 13 C -0.543 4.543 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.102 3.898 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.157 4.157 25 C -0.069 4.069 26 C -0.084 4.084 27 C -0.265 4.265 28 S 0.137 5.863 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.269 0.731 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.412 -6.632 -8.855 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.595 3.405 3 O -0.911 6.911 4 O -0.925 6.925 5 C -0.661 4.661 6 C -0.252 4.252 7 N -0.150 5.150 8 C 0.050 3.950 9 C -0.171 4.171 10 C -0.025 4.025 11 N -0.119 5.119 12 C 0.117 3.883 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.732 3.268 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.005 4.005 22 C -0.131 4.131 23 C -0.135 4.135 24 C -0.176 4.176 25 C -0.088 4.088 26 C -0.089 4.089 27 C -0.404 4.404 28 S 0.390 5.610 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.713 -6.754 -9.687 24.717 hybrid contribution 0.344 -0.006 2.128 2.156 sum -21.369 -6.761 -7.559 23.653 Atomic orbital electron populations 1.30300 1.26360 1.11709 1.12199 1.08320 0.78635 0.76405 0.77190 1.93664 1.78553 1.33466 1.85459 1.93622 1.79072 1.67130 1.52658 1.29045 0.95919 1.15308 1.25796 1.25250 0.97919 0.95678 1.06385 1.66057 1.05144 1.29337 1.14417 1.17949 0.87597 0.91964 0.97509 1.17662 0.91191 0.93447 1.14793 1.21729 0.92196 0.91427 0.97142 1.44835 1.10333 1.09464 1.47240 1.19770 0.72108 0.99446 0.97004 1.21312 0.94559 1.48252 0.94016 0.91686 1.24940 0.95389 0.94450 0.98904 1.69910 0.99840 1.46403 1.36591 0.86433 0.77223 0.79239 0.83945 1.19946 1.20933 1.19859 1.18272 0.88124 0.91870 1.02231 1.20148 0.99071 0.91758 1.02103 1.20685 0.92193 0.99195 1.01461 1.20516 0.97579 0.95974 1.03516 1.20264 0.96947 0.93269 0.98315 1.18846 0.93098 0.93335 1.03625 1.26958 1.03268 0.99261 1.10957 1.83806 0.98871 1.20624 1.57666 0.84991 0.84902 0.85176 0.83267 0.82186 0.81736 0.93304 0.93445 0.92143 0.85997 0.86553 0.86927 0.85877 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.99 10.62 101.05 1.07 -0.92 16 2 S 2.42 19.74 5.34 -107.50 -0.57 19.16 16 3 O -0.91 -11.95 18.10 -57.83 -1.05 -12.99 16 4 O -0.93 -10.41 18.10 -57.83 -1.05 -11.46 16 5 C -0.53 -3.80 6.38 36.01 0.23 -3.57 16 6 C 0.03 0.33 6.63 -13.52 -0.09 0.24 16 7 N -0.43 -6.99 9.73 -8.42 -0.08 -7.07 16 8 C 0.18 3.05 6.71 -84.63 -0.57 2.48 16 9 C -0.16 -3.08 6.27 -103.13 -0.65 -3.73 16 10 C 0.11 2.11 10.85 -16.34 -0.18 1.94 16 11 N -0.44 -9.69 2.76 -115.40 -0.32 -10.01 16 12 C 0.23 5.67 5.74 -5.20 -0.03 5.64 16 13 C -0.54 -14.36 9.39 -34.44 -0.32 -14.68 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 17 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.10 2.20 6.80 -83.98 -0.57 1.63 16 22 C -0.11 -2.20 9.99 -39.41 -0.39 -2.59 16 23 C -0.12 -1.98 10.01 -39.55 -0.40 -2.38 16 24 C -0.16 -2.62 9.98 -39.94 -0.40 -3.02 16 25 C -0.07 -1.29 9.89 -39.69 -0.39 -1.68 16 26 C -0.08 -1.73 6.31 -104.97 -0.66 -2.39 16 27 C -0.26 -3.67 10.86 29.51 0.32 -3.35 16 28 S 0.14 1.58 23.16 -107.50 -2.49 -0.91 16 29 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.13 0.08 8.14 -51.92 -0.42 -0.34 16 32 H 0.15 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.16 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.17 2.62 7.74 -52.49 -0.41 2.21 16 35 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.12 2.17 7.44 -52.49 -0.39 1.78 16 42 H 0.18 2.08 7.72 -52.49 -0.41 1.67 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -36.40 393.38 -12.01 -48.41 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.97 Total: 1.70 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -3.12 Total: -24.69 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.34 Total: -40.80 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -2.09 Total: -24.45 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 21.32 SS G_CDS: -3.06 Total: 18.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.40 -12.01 -48.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078869096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.626 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds