Wall clock time and date at job start Tue Mar 31 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47241 * 2 1 4 4 H 1.09002 * 109.52034 * 54.91869 * 3 2 1 5 5 C 1.53194 * 109.49880 * 294.84291 * 3 2 1 6 6 N 1.46926 * 108.77467 * 294.68332 * 5 3 2 7 7 S 1.65599 * 120.63340 * 126.37312 * 6 5 3 8 8 C 1.81397 * 104.44611 * 270.02176 * 7 6 5 9 9 O 1.42106 * 104.27674 * 26.08782 * 7 6 5 10 10 O 1.42088 * 104.28038 * 153.94744 * 7 6 5 11 11 C 1.46924 * 118.73549 * 306.38756 * 6 5 3 12 12 C 1.53190 * 108.77610 * 53.61310 * 11 6 5 13 13 C 1.53033 * 109.49988 * 175.00175 * 3 2 1 14 14 H 1.08998 * 109.45132 * 178.59921 * 13 3 2 15 15 N 1.46896 * 109.46035 * 298.56958 * 13 3 2 16 16 C 1.46902 * 110.99844 * 205.06562 * 15 13 3 17 17 H 1.08994 * 109.47471 * 324.99791 * 16 15 13 18 18 C 1.52996 * 109.47133 * 85.00192 * 16 15 13 19 19 C 1.50702 * 109.47027 * 204.99798 * 16 15 13 20 20 O 1.21283 * 120.00262 * 0.02562 * 19 16 15 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 16 15 22 22 C 1.46506 * 120.00264 * 0.28128 * 21 19 16 23 23 C 1.46499 * 120.00199 * 180.27479 * 21 19 16 24 24 C 1.50697 * 109.46949 * 90.00203 * 23 21 19 25 25 H 1.08004 * 120.00186 * 0.02562 * 24 23 21 26 26 C 1.37881 * 120.00081 * 180.02562 * 24 23 21 27 27 N 1.31519 * 120.00096 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00103 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.46927 * 59.99717 * 28 26 24 30 30 H 1.48496 * 109.47287 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47040 * 299.99940 * 28 26 24 32 32 H 1.09002 * 109.47139 * 299.99711 * 1 2 3 33 33 H 1.09006 * 109.47653 * 59.99439 * 1 2 3 34 34 H 1.08997 * 109.47547 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46703 * 240.00598 * 2 1 3 36 36 H 1.08993 * 109.47741 * 120.00219 * 2 1 3 37 37 H 1.08999 * 109.58705 * 174.89071 * 5 3 2 38 38 H 1.09001 * 109.58538 * 54.46774 * 5 3 2 39 39 H 1.08996 * 109.47831 * 59.99446 * 8 7 6 40 40 H 1.09003 * 109.47523 * 179.97438 * 8 7 6 41 41 H 1.09002 * 109.47372 * 299.99838 * 8 7 6 42 42 H 1.09004 * 109.58927 * 293.82424 * 11 6 5 43 43 H 1.09001 * 109.70512 * 173.46930 * 11 6 5 44 44 H 1.08999 * 109.49754 * 185.41312 * 12 11 6 45 45 H 1.09002 * 109.52575 * 65.32895 * 12 11 6 46 46 H 1.00896 * 111.00069 * 329.01620 * 15 13 3 47 47 H 1.09003 * 109.47307 * 300.00230 * 18 16 15 48 48 H 1.09002 * 109.47575 * 59.99473 * 18 16 15 49 49 H 1.09001 * 109.47551 * 179.97438 * 18 16 15 50 50 H 1.08998 * 109.46921 * 89.99095 * 22 21 19 51 51 H 1.08994 * 109.46996 * 209.99677 * 22 21 19 52 52 H 1.09001 * 109.46578 * 329.99540 * 22 21 19 53 53 H 1.09001 * 109.47567 * 210.00057 * 23 21 19 54 54 H 1.09005 * 109.47076 * 330.00563 * 23 21 19 55 55 H 0.96991 * 119.99957 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6384 2.1269 -1.3105 6 7 2.3365 1.4666 -2.4220 7 16 1.4917 0.8824 -3.7209 8 6 1.0855 -0.8258 -3.2654 9 8 0.3165 1.6803 -3.7622 10 8 2.4299 0.9044 -4.7878 11 6 3.7984 1.3343 -2.3589 12 6 4.1758 0.6588 -1.0367 13 6 3.5651 1.4451 0.1257 14 1 3.9297 2.4720 0.1006 15 7 3.9525 0.8191 1.3969 16 6 5.2662 1.3022 1.8428 17 1 5.9037 1.4740 0.9755 18 6 5.0928 2.6111 2.6157 19 6 5.9033 0.2709 2.7380 20 8 5.3206 -0.7649 2.9804 21 7 7.1232 0.4968 3.2645 22 6 7.8274 1.7476 2.9714 23 6 7.7452 -0.5084 4.1299 24 6 8.5607 -1.4582 3.2910 25 1 8.6110 -1.3261 2.2202 26 6 9.2426 -2.4960 3.8903 27 7 9.1809 -2.6572 5.1941 28 14 10.2539 -3.6730 2.8504 29 1 11.3110 -2.9161 2.1328 30 1 10.8843 -4.6919 3.7276 31 1 9.3709 -4.3460 1.8643 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 1.9210 3.1790 -1.2748 38 1 0.5612 2.0404 -1.4527 39 1 0.4850 -0.8264 -2.3558 40 1 0.5217 -1.2929 -4.0729 41 1 2.0055 -1.3846 -3.0936 42 1 4.2573 2.3218 -2.4087 43 1 4.1487 0.7261 -3.1929 44 1 5.2608 0.6413 -0.9338 45 1 3.7928 -0.3616 -1.0266 46 1 3.2507 0.9745 2.1050 47 1 4.6319 3.3572 1.9682 48 1 4.4553 2.4394 3.4830 49 1 6.0675 2.9694 2.9469 50 1 7.5664 2.4955 3.7201 51 1 8.9030 1.5725 2.9922 52 1 7.5366 2.1054 1.9837 53 1 8.3938 -0.0140 4.8532 54 1 6.9696 -1.0637 4.6574 55 1 9.6609 -3.3870 5.6157 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078897063.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:30 Heat of formation + Delta-G solvation = -122.582332 kcal Electronic energy + Delta-G solvation = -34891.300597 eV Core-core repulsion = 30475.673867 eV Total energy + Delta-G solvation = -4415.626730 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.202 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.08799 -40.19834 -38.26825 -37.07916 -36.82220 -36.45193 -34.90393 -34.63282 -32.73544 -30.95958 -30.29666 -29.72106 -28.75752 -27.47981 -25.79104 -25.18294 -24.46680 -23.60524 -22.57359 -20.62564 -20.00949 -19.27074 -18.79207 -18.62852 -17.74054 -17.33105 -17.23024 -17.06853 -16.46208 -16.40729 -16.24294 -15.91996 -15.60141 -15.33539 -14.84280 -14.68657 -14.55662 -14.37398 -14.21896 -14.16230 -14.05699 -13.75598 -13.62502 -13.46101 -13.40648 -13.25813 -13.20488 -13.16356 -13.14606 -12.86270 -12.80481 -12.59741 -12.52744 -12.47058 -12.29187 -12.21339 -12.12737 -12.07821 -11.89931 -11.68729 -11.58413 -11.24260 -11.04335 -10.62893 -10.36805 -9.91681 -9.35040 -9.14499 -8.20515 -6.35390 -0.72352 1.36765 1.41007 1.48237 1.62725 1.99507 2.31855 2.45292 2.88857 3.08502 3.12652 3.25469 3.59370 3.74521 3.82278 3.99218 4.03424 4.08173 4.14572 4.17216 4.20942 4.31054 4.37730 4.41667 4.46765 4.56989 4.65389 4.68898 4.73408 4.81025 4.83052 4.85366 4.85547 4.88775 4.90499 4.98423 5.02018 5.05800 5.09523 5.25579 5.26356 5.28298 5.33030 5.44601 5.48964 5.57765 5.59208 5.70926 5.88621 6.09177 6.15014 6.52927 6.73553 6.92329 7.31613 7.64733 8.85954 Molecular weight = 375.20amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.002291 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.051633 B =12218.940889 C =12971.408799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.096 4.096 4 H 0.096 0.904 5 C 0.126 3.874 6 N -0.995 5.995 7 S 2.615 3.385 8 C -0.670 4.670 9 O -0.986 6.986 10 O -0.992 6.992 11 C 0.126 3.874 12 C -0.128 4.128 13 C 0.099 3.901 14 H 0.066 0.934 15 N -0.676 5.676 16 C 0.085 3.915 17 H 0.112 0.888 18 C -0.180 4.180 19 C 0.498 3.502 20 O -0.583 6.583 21 N -0.614 5.614 22 C 0.078 3.922 23 C 0.262 3.738 24 C -0.540 4.540 25 H 0.052 0.948 26 C 0.007 3.993 27 N -0.930 5.930 28 Si 0.966 3.034 29 H -0.260 1.260 30 H -0.279 1.279 31 H -0.278 1.278 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.347 0.653 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.061 0.939 52 H 0.093 0.907 53 H 0.020 0.980 54 H -0.006 1.006 55 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 14.126 -15.378 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C -0.116 4.116 4 H 0.114 0.886 5 C 0.000 4.000 6 N -0.833 5.833 7 S 2.712 3.288 8 C -0.822 4.822 9 O -0.976 6.976 10 O -0.983 6.983 11 C 0.001 3.999 12 C -0.168 4.168 13 C -0.010 4.010 14 H 0.083 0.917 15 N -0.308 5.308 16 C -0.029 4.029 17 H 0.130 0.870 18 C -0.239 4.239 19 C 0.286 3.714 20 O -0.462 6.462 21 N -0.346 5.346 22 C -0.064 4.064 23 C 0.140 3.860 24 C -0.579 4.579 25 H 0.070 0.930 26 C -0.192 4.192 27 N -0.570 5.570 28 Si 0.790 3.210 29 H -0.184 1.184 30 H -0.204 1.204 31 H -0.204 1.204 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.167 0.833 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.111 0.889 53 H 0.038 0.962 54 H 0.012 0.988 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.833 13.428 -16.190 26.940 hybrid contribution 0.617 -0.935 0.914 1.446 sum -16.217 12.493 -15.276 25.542 Atomic orbital electron populations 1.21984 0.95451 1.02142 1.02520 1.21663 0.95629 0.96297 1.02807 1.21686 0.94141 0.97271 0.98509 0.88567 1.21627 0.97365 0.96989 0.83983 1.57549 1.15806 1.72521 1.37390 1.04519 0.73042 0.78045 0.73243 1.30626 1.13717 1.23891 1.14000 1.93559 1.50473 1.67214 1.86388 1.93560 1.62827 1.87938 1.53959 1.21463 0.78344 1.02413 0.97722 1.22012 1.00760 1.00259 0.93758 1.21495 0.94780 0.96322 0.88363 0.91657 1.60006 1.02428 1.62251 1.06083 1.21350 0.92815 0.91420 0.97265 0.87021 1.22623 1.04602 0.95928 1.00756 1.21438 0.80895 0.88150 0.80896 1.90621 1.64127 1.29830 1.61602 1.48156 1.17668 1.19765 1.49050 1.22052 0.97681 0.84657 1.01978 1.18674 0.91330 0.86604 0.89405 1.21685 1.29289 1.12959 0.93929 0.92964 1.25859 0.97953 0.99171 0.96235 1.70045 1.43766 1.32557 1.10612 0.85495 0.78699 0.78402 0.78384 1.18403 1.20422 1.20371 0.91812 0.92019 0.92518 0.91585 0.92240 0.89491 0.88219 0.84077 0.83603 0.84055 0.89646 0.89000 0.91571 0.91526 0.83263 0.89001 0.92989 0.89644 0.90893 0.92008 0.88881 0.96152 0.98764 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.54 71.98 0.62 -1.33 16 2 C -0.13 -1.88 4.61 30.59 0.14 -1.74 16 3 C -0.10 -1.17 2.05 -10.72 -0.02 -1.20 16 4 H 0.10 0.96 8.10 -2.39 -0.02 0.94 16 5 C 0.13 1.41 5.58 86.36 0.48 1.89 16 6 N -0.99 -13.34 2.58 -513.07 -1.32 -14.66 16 7 S 2.62 40.99 6.05 -56.49 -0.34 40.64 16 8 C -0.67 -6.35 9.82 113.37 1.11 -5.24 16 9 O -0.99 -20.63 16.73 -127.65 -2.14 -22.77 16 10 O -0.99 -22.44 16.73 -127.65 -2.14 -24.58 16 11 C 0.13 1.73 6.31 86.36 0.54 2.27 16 12 C -0.13 -2.16 5.23 30.67 0.16 -2.00 16 13 C 0.10 1.54 1.96 44.94 0.09 1.63 16 14 H 0.07 0.81 7.11 -2.39 -0.02 0.79 16 15 N -0.68 -15.53 4.78 -473.19 -2.26 -17.80 16 16 C 0.08 2.12 2.00 44.17 0.09 2.21 16 17 H 0.11 2.47 6.36 -2.39 -0.02 2.45 16 18 C -0.18 -3.20 8.78 71.98 0.63 -2.57 16 19 C 0.50 19.97 7.14 87.66 0.63 20.60 16 20 O -0.58 -30.04 16.01 -3.04 -0.05 -30.09 16 21 N -0.61 -25.35 2.86 -851.12 -2.43 -27.79 16 22 C 0.08 2.21 8.81 127.77 1.13 3.33 16 23 C 0.26 14.15 5.16 85.63 0.44 14.59 16 24 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 25 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 26 C 0.01 0.38 5.46 84.66 0.46 0.84 16 27 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 28 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 29 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 30 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 31 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.60 5.98 -2.38 -0.01 0.58 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.94 4.13 -2.39 -0.01 0.93 16 36 H 0.06 1.22 7.44 -2.39 -0.02 1.21 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 1.05 5.30 -2.39 -0.01 1.04 16 39 H 0.14 1.15 5.50 -2.39 -0.01 1.14 16 40 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.28 7.11 -2.39 -0.02 1.26 16 44 H 0.07 1.25 7.41 -2.39 -0.02 1.23 16 45 H 0.07 1.30 6.45 -2.39 -0.02 1.28 16 46 H 0.35 7.77 8.00 -89.70 -0.72 7.05 16 47 H 0.09 1.07 7.43 -2.39 -0.02 1.06 16 48 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 49 H 0.08 1.43 4.55 -2.39 -0.01 1.42 16 50 H 0.07 1.67 6.97 -2.39 -0.02 1.65 16 51 H 0.06 1.87 8.07 -2.39 -0.02 1.86 16 52 H 0.09 1.93 6.00 -2.39 -0.01 1.91 16 53 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 54 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 55 H 0.27 15.25 8.31 -92.72 -0.77 14.48 16 Total: -1.00 -85.30 421.21 -1.44 -86.74 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.19 Total: 17.32 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.74 Total: 2.27 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -5.73 Total: -116.63 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -4.32 Total: -77.44 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 40.99 SS G_CDS: -0.34 Total: 40.64 kcal Total: -85.30 -1.44 -86.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078897063.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.847 kcal (2) G-P(sol) polarization free energy of solvation -85.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds