Wall clock time and date at job start Tue Mar 31 2020 06:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47259 * 2 1 4 4 C 1.53005 * 109.47162 * 119.99418 * 2 1 3 5 5 C 1.53007 * 109.46720 * 65.00389 * 4 2 1 6 6 N 1.46502 * 109.46873 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99573 * 180.02562 * 6 5 4 8 8 O 1.21275 * 120.00402 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99745 * 179.97438 * 7 6 5 10 10 H 1.09004 * 108.56610 * 61.82017 * 9 7 6 11 11 C 1.54561 * 108.75426 * 303.64188 * 9 7 6 12 12 S 1.84216 * 101.32461 * 262.12514 * 11 9 7 13 13 C 1.84332 * 93.82717 * 327.58484 * 12 11 9 14 14 N 1.45502 * 108.75514 * 179.97438 * 9 7 6 15 15 C 1.34776 * 122.42761 * 302.04698 * 14 9 7 16 16 O 1.21554 * 120.00094 * 5.51054 * 15 14 9 17 17 C 1.47884 * 119.99962 * 185.50887 * 15 14 9 18 18 C 1.39917 * 120.02803 * 27.93562 * 17 15 14 19 19 C 1.38325 * 120.36163 * 180.27456 * 18 17 15 20 20 C 1.37751 * 120.41088 * 359.71165 * 19 18 17 21 21 C 1.40750 * 120.03961 * 0.02562 * 20 19 18 22 22 C 1.41436 * 120.17695 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99793 * 155.00531 * 22 21 20 24 24 C 1.39937 * 120.00358 * 335.00346 * 22 21 20 25 25 N 1.30828 * 119.99435 * 342.38496 * 24 22 21 26 26 Si 1.86796 * 120.00451 * 162.38001 * 24 22 21 27 27 H 1.48500 * 109.46942 * 94.77018 * 26 24 22 28 28 H 1.48503 * 109.47231 * 214.77349 * 26 24 22 29 29 H 1.48505 * 109.46860 * 334.76979 * 26 24 22 30 30 C 1.39002 * 120.02543 * 207.66886 * 17 15 14 31 31 H 1.08996 * 109.47331 * 299.99812 * 1 2 3 32 32 H 1.09000 * 109.46777 * 60.00760 * 1 2 3 33 33 H 1.09003 * 109.46754 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47664 * 239.99961 * 2 1 3 35 35 H 1.09002 * 109.47549 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46670 * 299.99849 * 3 2 1 37 37 H 1.09002 * 109.46814 * 59.99441 * 3 2 1 38 38 H 1.08994 * 109.47099 * 305.00383 * 4 2 1 39 39 H 1.09005 * 109.47258 * 184.99801 * 4 2 1 40 40 H 1.09000 * 109.47066 * 59.99836 * 5 4 2 41 41 H 1.08997 * 109.47100 * 299.99801 * 5 4 2 42 42 H 0.96998 * 119.99769 * 359.97438 * 6 5 4 43 43 H 1.08999 * 111.05705 * 20.13673 * 11 9 7 44 44 H 1.09004 * 111.05327 * 144.11779 * 11 9 7 45 45 H 1.09003 * 110.90320 * 275.43769 * 13 12 11 46 46 H 1.09004 * 110.76881 * 151.92862 * 13 12 11 47 47 H 1.08007 * 119.81692 * 0.02998 * 18 17 15 48 48 H 1.08004 * 119.79691 * 179.72355 * 19 18 17 49 49 H 1.08004 * 119.97897 * 179.97438 * 20 19 18 50 50 H 0.97005 * 119.99934 * 179.97438 * 25 24 22 51 51 H 1.07999 * 120.19830 * 0.02562 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 7 2.1231 -2.8858 2.3846 7 6 1.8830 -4.2019 2.5481 8 8 1.2628 -4.8146 1.7050 9 6 2.3852 -4.9123 3.7786 10 1 1.9167 -4.4630 4.6543 11 6 3.9150 -4.7144 3.8770 12 16 4.5311 -6.2891 3.1460 13 6 3.1055 -7.2790 3.7666 14 7 1.9922 -6.3112 3.7044 15 6 0.7052 -6.6954 3.5926 16 8 -0.1677 -5.8616 3.4495 17 6 0.3549 -8.1312 3.6440 18 6 1.1636 -9.0241 4.3556 19 6 0.8456 -10.3695 4.4035 20 6 -0.2737 -10.8449 3.7564 21 6 -1.1022 -9.9609 3.0401 22 6 -2.2518 -10.4460 2.3741 23 1 -3.0823 -9.7838 2.1786 24 6 -2.3132 -11.7839 1.9686 25 7 -1.2168 -12.4926 1.8837 26 14 -3.9605 -12.5580 1.5485 27 1 -4.1907 -12.4679 0.0842 28 1 -3.9573 -13.9842 1.9623 29 1 -5.0432 -11.8372 2.2651 30 6 -0.7810 -8.5939 2.9899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9564 0.8900 38 1 1.6053 -0.2616 2.1370 39 1 3.1264 -0.6443 1.2953 40 1 2.0699 -2.6549 0.3004 41 1 0.5490 -2.2724 1.1422 42 1 2.6194 -2.3959 3.0587 43 1 4.2376 -3.8564 3.2874 44 1 4.2310 -4.6149 4.9155 45 1 3.2763 -7.6061 4.7923 46 1 2.9137 -8.1313 3.1147 47 1 2.0430 -8.6616 4.8671 48 1 1.4787 -11.0514 4.9519 49 1 -0.5151 -11.8968 3.7981 50 1 -1.2593 -13.4202 1.6029 51 1 -1.4101 -7.9076 2.4426 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078910690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:06 Heat of formation + Delta-G solvation = -43.759040 kcal Electronic energy + Delta-G solvation = -32011.082025 eV Core-core repulsion = 27808.463587 eV Total energy + Delta-G solvation = -4202.618438 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.55761 -38.92982 -37.39736 -36.90195 -35.83900 -34.40347 -33.79091 -31.90062 -29.94385 -29.60129 -28.95789 -27.49345 -27.35002 -25.34945 -24.73835 -23.49084 -21.93119 -20.94034 -20.71249 -20.10967 -19.28086 -17.79657 -17.59279 -17.19266 -16.09806 -16.02670 -15.79648 -15.47154 -15.16585 -15.01203 -14.83948 -14.57149 -14.22968 -14.00894 -13.90410 -13.53158 -13.39722 -13.25121 -13.04442 -12.89427 -12.81608 -12.55271 -12.48953 -12.29268 -12.14540 -12.05719 -11.75772 -11.59036 -11.21630 -11.20152 -11.13681 -11.00610 -10.96949 -10.74403 -10.57863 -10.42680 -10.20047 -9.94475 -9.54693 -9.24327 -9.14902 -9.06880 -8.58259 -7.97514 -7.64132 -7.54377 -6.83534 -4.43222 1.48373 1.87251 2.21289 2.66149 2.73332 2.75572 3.05844 3.08638 3.14947 3.18226 3.75256 3.90697 4.05290 4.42142 4.43887 4.49767 4.56400 4.61768 4.81336 4.94638 4.96350 5.06899 5.09541 5.20818 5.28831 5.32149 5.34932 5.40183 5.41514 5.50523 5.57526 5.58317 5.73165 5.75701 5.81349 6.01262 6.05670 6.08861 6.21234 6.31495 6.37327 6.86825 6.89655 6.97392 7.14342 7.33761 7.39711 7.47315 7.67436 7.82524 7.93431 8.13807 8.28995 8.51497 8.68398 8.78863 8.82820 10.11925 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.002273 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.278172 B =12313.710426 C =14502.232706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.125 4.125 5 C 0.120 3.880 6 N -0.738 5.738 7 C 0.505 3.495 8 O -0.490 6.490 9 C 0.119 3.881 10 H 0.108 0.892 11 C -0.069 4.069 12 S -0.281 6.281 13 C 0.173 3.827 14 N -0.606 5.606 15 C 0.588 3.412 16 O -0.521 6.521 17 C -0.111 4.111 18 C -0.226 4.226 19 C -0.108 4.108 20 C -0.144 4.144 21 C 0.101 3.899 22 C -0.457 4.457 23 H 0.081 0.919 24 C 0.075 3.925 25 N -0.793 5.793 26 Si 0.909 3.091 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.259 1.259 30 C -0.152 4.152 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.395 0.605 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.129 0.871 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.122 0.878 50 H 0.282 0.718 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.466 19.430 2.946 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.163 4.163 5 C -0.004 4.004 6 N -0.393 5.393 7 C 0.288 3.712 8 O -0.361 6.361 9 C 0.009 3.991 10 H 0.125 0.875 11 C -0.218 4.218 12 S -0.055 6.055 13 C -0.060 4.060 14 N -0.344 5.344 15 C 0.380 3.620 16 O -0.396 6.396 17 C -0.114 4.114 18 C -0.247 4.247 19 C -0.127 4.127 20 C -0.164 4.164 21 C 0.099 3.901 22 C -0.486 4.486 23 H 0.099 0.901 24 C -0.143 4.143 25 N -0.418 5.418 26 Si 0.734 3.266 27 H -0.195 1.195 28 H -0.200 1.200 29 H -0.183 1.183 30 C -0.173 4.173 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.228 0.772 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.147 0.853 47 H 0.119 0.881 48 H 0.113 0.887 49 H 0.139 0.861 50 H 0.093 0.907 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.554 18.867 1.466 22.172 hybrid contribution -1.233 0.084 0.700 1.420 sum 10.321 18.951 2.165 21.687 Atomic orbital electron populations 1.21937 0.94905 1.02433 1.01804 1.21039 0.96247 0.96135 0.97880 1.21834 1.00862 0.95793 1.01879 1.21861 1.01295 0.94197 0.98970 1.21398 1.00092 0.91172 0.87718 1.45914 1.59590 1.09499 1.24286 1.20656 0.80279 0.82004 0.88231 1.90787 1.37081 1.65443 1.42820 1.21070 0.94731 0.85039 0.98237 0.87497 1.24493 0.93000 0.99045 1.05291 1.88484 1.34946 1.07791 1.74285 1.24874 0.83102 0.94071 1.03935 1.48175 1.06811 1.02805 1.76578 1.18762 0.79549 0.89903 0.73815 1.90705 1.47117 1.54161 1.47586 1.19153 0.98728 0.89478 1.04004 1.20748 1.01745 0.93717 1.08450 1.20601 0.97748 0.94154 1.00149 1.21493 0.96070 1.00461 0.98354 1.17575 0.92446 0.90231 0.89867 1.19605 1.01754 0.94857 1.32419 0.90116 1.25916 0.98016 0.97166 0.93161 1.69804 1.28535 1.09622 1.33805 0.86273 0.82330 0.78587 0.79455 1.19481 1.19980 1.18317 1.21148 0.96532 0.96200 1.03386 0.92614 0.92636 0.92029 0.90844 0.92708 0.92572 0.92664 0.91243 0.91337 0.91637 0.91189 0.77154 0.86228 0.87069 0.87935 0.85264 0.88139 0.88698 0.86061 0.90728 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.95 37.16 0.33 -0.83 16 2 C -0.09 -0.64 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.13 -0.86 4.80 -26.72 -0.13 -0.98 16 5 C 0.12 1.24 5.43 -4.04 -0.02 1.22 16 6 N -0.74 -7.81 5.14 -60.29 -0.31 -8.12 16 7 C 0.51 7.75 6.52 -10.98 -0.07 7.68 16 8 O -0.49 -10.37 14.19 -16.56 -0.24 -10.60 16 9 C 0.12 1.57 2.95 -68.80 -0.20 1.37 16 10 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 11 C -0.07 -0.63 6.94 37.98 0.26 -0.37 16 12 S -0.28 -3.59 23.44 -107.50 -2.52 -6.12 16 13 C 0.17 2.51 5.60 60.47 0.34 2.85 16 14 N -0.61 -10.24 2.80 -170.07 -0.48 -10.72 16 15 C 0.59 12.71 6.64 -12.31 -0.08 12.63 16 16 O -0.52 -12.69 14.79 -16.80 -0.25 -12.94 16 17 C -0.11 -2.55 5.51 -105.04 -0.58 -3.13 16 18 C -0.23 -4.66 7.89 -38.92 -0.31 -4.96 16 19 C -0.11 -2.35 10.01 -39.73 -0.40 -2.75 16 20 C -0.14 -3.60 8.69 -38.81 -0.34 -3.94 16 21 C 0.10 2.70 5.57 -106.87 -0.59 2.10 16 22 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 23 H 0.08 2.10 7.91 -52.49 -0.41 1.69 16 24 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 25 N -0.79 -20.11 10.97 55.55 0.61 -19.50 16 26 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 29 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 30 C -0.15 -3.94 9.33 -38.44 -0.36 -4.30 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.87 6.57 -51.93 -0.34 0.53 16 42 H 0.39 2.66 7.88 -40.82 -0.32 2.33 16 43 H 0.12 0.85 7.01 -51.93 -0.36 0.49 16 44 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 1.24 6.67 -51.93 -0.35 0.90 16 46 H 0.13 2.13 6.67 -51.93 -0.35 1.79 16 47 H 0.10 1.70 4.67 -52.48 -0.25 1.45 16 48 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 49 H 0.12 3.10 6.17 -52.48 -0.32 2.78 16 50 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 51 H 0.10 2.80 7.88 -52.49 -0.41 2.39 16 LS Contribution 417.26 15.07 6.29 6.29 Total: -1.00 -33.45 417.26 -12.09 -45.53 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.67 Total: 8.09 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.50 Total: -5.54 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.18 Total: -38.34 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.48 Total: -23.54 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.52 Total: -6.12 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.45 -12.09 -45.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078910690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.776 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds