Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47259 * 2 1 4 4 C 1.53005 * 109.47162 * 119.99418 * 2 1 3 5 5 C 1.53007 * 109.46720 * 65.00389 * 4 2 1 6 6 N 1.46502 * 109.46873 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99573 * 180.02562 * 6 5 4 8 8 O 1.21275 * 120.00402 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99745 * 179.97438 * 7 6 5 10 10 H 1.09004 * 108.56610 * 61.82017 * 9 7 6 11 11 C 1.54561 * 108.75426 * 303.64188 * 9 7 6 12 12 S 1.84216 * 101.32461 * 262.12514 * 11 9 7 13 13 C 1.84332 * 93.82717 * 327.58484 * 12 11 9 14 14 N 1.45502 * 108.75514 * 179.97438 * 9 7 6 15 15 C 1.34776 * 122.42761 * 302.04698 * 14 9 7 16 16 O 1.21554 * 120.00094 * 5.51054 * 15 14 9 17 17 C 1.47884 * 119.99962 * 185.50887 * 15 14 9 18 18 C 1.39917 * 120.02803 * 27.93562 * 17 15 14 19 19 C 1.38325 * 120.36163 * 180.27456 * 18 17 15 20 20 C 1.37751 * 120.41088 * 359.71165 * 19 18 17 21 21 C 1.40750 * 120.03961 * 0.02562 * 20 19 18 22 22 C 1.41436 * 120.17695 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99793 * 155.00531 * 22 21 20 24 24 C 1.39937 * 120.00358 * 335.00346 * 22 21 20 25 25 N 1.30828 * 119.99435 * 342.38496 * 24 22 21 26 26 Si 1.86796 * 120.00451 * 162.38001 * 24 22 21 27 27 H 1.48500 * 109.46942 * 94.77018 * 26 24 22 28 28 H 1.48503 * 109.47231 * 214.77349 * 26 24 22 29 29 H 1.48505 * 109.46860 * 334.76979 * 26 24 22 30 30 C 1.39002 * 120.02543 * 207.66886 * 17 15 14 31 31 H 1.08996 * 109.47331 * 299.99812 * 1 2 3 32 32 H 1.09000 * 109.46777 * 60.00760 * 1 2 3 33 33 H 1.09003 * 109.46754 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47664 * 239.99961 * 2 1 3 35 35 H 1.09002 * 109.47549 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46670 * 299.99849 * 3 2 1 37 37 H 1.09002 * 109.46814 * 59.99441 * 3 2 1 38 38 H 1.08994 * 109.47099 * 305.00383 * 4 2 1 39 39 H 1.09005 * 109.47258 * 184.99801 * 4 2 1 40 40 H 1.09000 * 109.47066 * 59.99836 * 5 4 2 41 41 H 1.08997 * 109.47100 * 299.99801 * 5 4 2 42 42 H 0.96998 * 119.99769 * 359.97438 * 6 5 4 43 43 H 1.08999 * 111.05705 * 20.13673 * 11 9 7 44 44 H 1.09004 * 111.05327 * 144.11779 * 11 9 7 45 45 H 1.09003 * 110.90320 * 275.43769 * 13 12 11 46 46 H 1.09004 * 110.76881 * 151.92862 * 13 12 11 47 47 H 1.08007 * 119.81692 * 0.02998 * 18 17 15 48 48 H 1.08004 * 119.79691 * 179.72355 * 19 18 17 49 49 H 1.08004 * 119.97897 * 179.97438 * 20 19 18 50 50 H 0.97005 * 119.99934 * 179.97438 * 25 24 22 51 51 H 1.07999 * 120.19830 * 0.02562 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 7 2.1231 -2.8858 2.3846 7 6 1.8830 -4.2019 2.5481 8 8 1.2628 -4.8146 1.7050 9 6 2.3852 -4.9123 3.7786 10 1 1.9167 -4.4630 4.6543 11 6 3.9150 -4.7144 3.8770 12 16 4.5311 -6.2891 3.1460 13 6 3.1055 -7.2790 3.7666 14 7 1.9922 -6.3112 3.7044 15 6 0.7052 -6.6954 3.5926 16 8 -0.1677 -5.8616 3.4495 17 6 0.3549 -8.1312 3.6440 18 6 1.1636 -9.0241 4.3556 19 6 0.8456 -10.3695 4.4035 20 6 -0.2737 -10.8449 3.7564 21 6 -1.1022 -9.9609 3.0401 22 6 -2.2518 -10.4460 2.3741 23 1 -3.0823 -9.7838 2.1786 24 6 -2.3132 -11.7839 1.9686 25 7 -1.2168 -12.4926 1.8837 26 14 -3.9605 -12.5580 1.5485 27 1 -4.1907 -12.4679 0.0842 28 1 -3.9573 -13.9842 1.9623 29 1 -5.0432 -11.8372 2.2651 30 6 -0.7810 -8.5939 2.9899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9564 0.8900 38 1 1.6053 -0.2616 2.1370 39 1 3.1264 -0.6443 1.2953 40 1 2.0699 -2.6549 0.3004 41 1 0.5490 -2.2724 1.1422 42 1 2.6194 -2.3959 3.0587 43 1 4.2376 -3.8564 3.2874 44 1 4.2310 -4.6149 4.9155 45 1 3.2763 -7.6061 4.7923 46 1 2.9137 -8.1313 3.1147 47 1 2.0430 -8.6616 4.8671 48 1 1.4787 -11.0514 4.9519 49 1 -0.5151 -11.8968 3.7981 50 1 -1.2593 -13.4202 1.6029 51 1 -1.4101 -7.9076 2.4426 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078910690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -63.565140 kcal Electronic energy + Delta-G solvation = -32011.940882 eV Core-core repulsion = 27808.463587 eV Total energy + Delta-G solvation = -4203.477295 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.88937 -40.35047 -38.88743 -37.97266 -37.22976 -35.64856 -35.42063 -33.14057 -31.79431 -31.19293 -29.84799 -28.58971 -28.05160 -27.24082 -25.84347 -24.57783 -23.27988 -22.71623 -21.87024 -21.16141 -20.50074 -19.44796 -18.69795 -18.48893 -17.70993 -17.26109 -16.94276 -16.64662 -16.58020 -16.34224 -16.26769 -15.85276 -15.22227 -15.10322 -14.88135 -14.81479 -14.70951 -14.62575 -14.48510 -14.16223 -13.97611 -13.76890 -13.58536 -13.52147 -13.10634 -13.08517 -13.03826 -12.86554 -12.71712 -12.54449 -12.44033 -12.18277 -12.01429 -11.84956 -11.63804 -11.62396 -11.53912 -11.39094 -11.18544 -11.08965 -10.79218 -10.13928 -9.93523 -9.51658 -9.43394 -8.94786 -8.70930 -6.42837 0.37876 0.49719 0.89344 0.93489 1.35411 1.41710 1.45676 1.51511 1.58037 1.98306 2.18148 2.18972 2.69573 3.07369 3.54984 3.60133 3.66736 3.80172 3.89836 3.95684 4.03394 4.07666 4.19205 4.26710 4.29042 4.37971 4.43319 4.44008 4.54713 4.62785 4.74892 4.79210 4.92499 4.94737 4.96134 4.99315 5.02693 5.07033 5.10609 5.18006 5.24680 5.30651 5.39474 5.44396 5.44672 5.47875 5.73217 5.93504 5.96766 5.98265 6.28355 6.48901 6.56534 6.83014 6.88635 7.04779 7.26697 8.27290 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.002273 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.278172 B =12313.710426 C =14502.232706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.112 4.112 5 C 0.120 3.880 6 N -0.714 5.714 7 C 0.497 3.503 8 O -0.561 6.561 9 C 0.110 3.890 10 H 0.132 0.868 11 C -0.046 4.046 12 S -0.296 6.296 13 C 0.163 3.837 14 N -0.601 5.601 15 C 0.585 3.415 16 O -0.560 6.560 17 C -0.118 4.118 18 C -0.198 4.198 19 C -0.104 4.104 20 C -0.160 4.160 21 C 0.074 3.926 22 C -0.503 4.503 23 H 0.066 0.934 24 C 0.039 3.961 25 N -0.819 5.819 26 Si 0.982 3.018 27 H -0.265 1.265 28 H -0.256 1.256 29 H -0.263 1.263 30 C -0.189 4.189 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.418 0.582 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.138 0.862 46 H 0.105 0.895 47 H 0.149 0.851 48 H 0.136 0.864 49 H 0.112 0.888 50 H 0.292 0.708 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.805 20.996 5.236 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.149 4.149 5 C -0.004 4.004 6 N -0.369 5.369 7 C 0.281 3.719 8 O -0.438 6.438 9 C 0.001 3.999 10 H 0.150 0.850 11 C -0.194 4.194 12 S -0.070 6.070 13 C -0.069 4.069 14 N -0.336 5.336 15 C 0.376 3.624 16 O -0.438 6.438 17 C -0.121 4.121 18 C -0.218 4.218 19 C -0.122 4.122 20 C -0.180 4.180 21 C 0.072 3.928 22 C -0.532 4.532 23 H 0.084 0.916 24 C -0.177 4.177 25 N -0.445 5.445 26 Si 0.802 3.198 27 H -0.190 1.190 28 H -0.180 1.180 29 H -0.187 1.187 30 C -0.210 4.210 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.256 0.744 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.123 0.877 47 H 0.166 0.834 48 H 0.154 0.846 49 H 0.130 0.870 50 H 0.103 0.897 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.995 20.491 3.795 25.673 hybrid contribution -2.090 -0.227 -0.003 2.102 sum 12.905 20.263 3.792 24.321 Atomic orbital electron populations 1.21943 0.95871 1.01083 1.02284 1.21052 0.95450 0.97224 0.97692 1.21791 1.01420 0.94440 1.02253 1.21798 1.02642 0.91081 0.99427 1.21399 0.98406 0.93523 0.87065 1.45734 1.58321 1.08203 1.24655 1.21210 0.79361 0.83142 0.88170 1.90776 1.40407 1.67219 1.45368 1.21465 0.97916 0.82660 0.97821 0.85036 1.24776 0.88862 0.97450 1.08308 1.88614 1.33007 1.09973 1.75412 1.24985 0.83020 0.93524 1.05410 1.48058 1.05707 1.05202 1.74642 1.18478 0.81082 0.88857 0.73997 1.90674 1.48893 1.54774 1.49484 1.19465 0.97929 0.91396 1.03351 1.21233 1.01786 0.92797 1.05945 1.21038 0.96773 0.95356 0.99076 1.21529 0.97369 0.99777 0.99290 1.17862 0.93305 0.90830 0.90780 1.19768 1.02105 0.96322 1.35025 0.91612 1.26690 1.01762 0.96774 0.92437 1.69820 1.30257 1.10292 1.34142 0.85206 0.77283 0.78159 0.79154 1.18995 1.18020 1.18677 1.21049 0.98324 0.95914 1.05722 0.92096 0.92228 0.94277 0.91563 0.91735 0.92505 0.92056 0.89978 0.89120 0.93330 0.93962 0.74362 0.83724 0.82364 0.84473 0.87725 0.83378 0.84608 0.87019 0.89731 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.95 71.98 0.64 -1.73 16 2 C -0.10 -1.20 2.92 -10.79 -0.03 -1.23 16 3 C -0.14 -1.29 9.19 71.98 0.66 -0.63 16 4 C -0.11 -1.30 4.80 30.60 0.15 -1.15 16 5 C 0.12 2.48 5.43 86.38 0.47 2.95 16 6 N -0.71 -13.93 5.14 -463.05 -2.38 -16.31 16 7 C 0.50 14.95 6.52 87.66 0.57 15.52 16 8 O -0.56 -24.89 14.19 18.14 0.26 -24.64 16 9 C 0.11 2.61 2.95 44.96 0.13 2.74 16 10 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 11 C -0.05 -0.60 6.94 72.51 0.50 -0.10 16 12 S -0.30 -6.62 23.44 -56.49 -1.32 -7.94 16 13 C 0.16 4.29 5.60 127.55 0.71 5.00 16 14 N -0.60 -19.48 2.80 -810.24 -2.27 -21.75 16 15 C 0.59 25.90 6.64 86.80 0.58 26.48 16 16 O -0.56 -28.71 14.79 17.27 0.26 -28.46 16 17 C -0.12 -5.63 5.51 -20.13 -0.11 -5.74 16 18 C -0.20 -7.86 7.89 22.70 0.18 -7.68 16 19 C -0.10 -4.41 10.01 22.18 0.22 -4.18 16 20 C -0.16 -8.22 8.69 22.77 0.20 -8.02 16 21 C 0.07 4.24 5.57 -21.32 -0.12 4.12 16 22 C -0.50 -28.86 9.05 23.47 0.21 -28.65 16 23 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 24 C 0.04 2.01 5.14 85.25 0.44 2.45 16 25 N -0.82 -42.90 10.97 21.82 0.24 -42.66 16 26 Si 0.98 39.57 29.59 68.60 2.03 41.60 16 27 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 28 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 29 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 30 C -0.19 -10.62 9.33 23.01 0.21 -10.41 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.76 6.57 -2.39 -0.02 0.75 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.04 1.13 6.57 -2.39 -0.02 1.11 16 42 H 0.42 4.03 7.88 -92.71 -0.73 3.30 16 43 H 0.14 1.24 7.01 -2.39 -0.02 1.23 16 44 H 0.16 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.14 2.66 6.67 -2.39 -0.02 2.64 16 46 H 0.10 3.32 6.67 -2.39 -0.02 3.30 16 47 H 0.15 4.40 4.67 -2.91 -0.01 4.39 16 48 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 49 H 0.11 5.89 6.17 -2.91 -0.02 5.87 16 50 H 0.29 13.64 8.30 -92.70 -0.77 12.87 16 51 H 0.07 4.40 7.88 -2.91 -0.02 4.38 16 Total: -1.00 -83.32 417.26 2.66 -80.66 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.23 Total: 29.76 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.62 Total: -10.27 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -4.41 Total: -80.72 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: 0.51 Total: -53.09 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -1.32 Total: -7.94 kcal Total: -83.32 2.66 -80.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078910690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.096 kcal (2) G-P(sol) polarization free energy of solvation -83.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds