Wall clock time and date at job start Tue Mar 31 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.52998 * 109.47115 * 119.99925 * 2 1 3 5 5 C 1.53004 * 109.47414 * 174.99894 * 4 2 1 6 6 N 1.46497 * 109.47617 * 180.02562 * 5 4 2 7 7 C 1.34766 * 120.00100 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00305 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00126 * 179.97438 * 7 6 5 10 10 H 1.08998 * 108.70164 * 303.20106 * 9 7 6 11 11 C 1.54569 * 108.74984 * 61.45352 * 9 7 6 12 12 S 1.84218 * 101.32536 * 97.87499 * 11 9 7 13 13 C 1.84071 * 93.91062 * 32.25613 * 12 11 9 14 14 N 1.45496 * 108.75378 * 185.09101 * 9 7 6 15 15 C 1.34780 * 122.43022 * 57.94021 * 14 9 7 16 16 O 1.21545 * 120.00090 * 177.71228 * 15 14 9 17 17 C 1.47883 * 119.99873 * 357.71035 * 15 14 9 18 18 C 1.39924 * 120.02173 * 54.90539 * 17 15 14 19 19 C 1.38339 * 120.35399 * 179.78767 * 18 17 15 20 20 C 1.37753 * 120.41257 * 0.46946 * 19 18 17 21 21 C 1.40754 * 120.03903 * 359.78668 * 20 19 18 22 22 C 1.41431 * 120.17431 * 179.97438 * 21 20 19 23 23 H 1.08003 * 120.00287 * 330.67990 * 22 21 20 24 24 C 1.39943 * 120.00004 * 150.69170 * 22 21 20 25 25 N 1.30826 * 119.99589 * 349.46019 * 24 22 21 26 26 Si 1.86799 * 119.99983 * 169.46426 * 24 22 21 27 27 H 1.48497 * 109.47435 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46945 * 120.00042 * 26 24 22 29 29 H 1.48506 * 109.46855 * 239.99672 * 26 24 22 30 30 C 1.38995 * 120.02886 * 235.18582 * 17 15 14 31 31 H 1.09006 * 109.46939 * 300.00172 * 1 2 3 32 32 H 1.08999 * 109.47090 * 59.99981 * 1 2 3 33 33 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46884 * 239.99972 * 2 1 3 35 35 H 1.09001 * 109.47024 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47118 * 300.00002 * 3 2 1 37 37 H 1.08999 * 109.46777 * 60.00432 * 3 2 1 38 38 H 1.09005 * 109.47271 * 54.99820 * 4 2 1 39 39 H 1.09002 * 109.47404 * 294.99839 * 4 2 1 40 40 H 1.09005 * 109.46962 * 59.99737 * 5 4 2 41 41 H 1.09002 * 109.46790 * 300.00321 * 5 4 2 42 42 H 0.96999 * 119.99472 * 0.02562 * 6 5 4 43 43 H 1.08997 * 111.04996 * 215.88603 * 11 9 7 44 44 H 1.08997 * 111.05191 * 339.86400 * 11 9 7 45 45 H 1.09003 * 110.77698 * 208.27996 * 13 12 11 46 46 H 1.08995 * 110.94340 * 84.92315 * 13 12 11 47 47 H 1.07992 * 119.82461 * 0.02562 * 18 17 15 48 48 H 1.07999 * 119.78706 * 180.21565 * 19 18 17 49 49 H 1.07997 * 119.98142 * 179.76778 * 20 19 18 50 50 H 0.97006 * 119.99685 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.19710 * 359.95011 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0532 -1.5222 2.3839 7 6 5.3740 -1.7338 2.5477 8 8 6.1585 -1.3517 1.7054 9 6 5.8764 -2.4443 3.7782 10 1 5.5326 -1.9026 4.6594 11 6 5.2798 -3.8699 3.8071 12 16 6.6660 -4.8565 3.1009 13 6 7.9693 -3.7633 3.8043 14 7 7.3312 -2.4328 3.7637 15 6 8.0446 -1.2903 3.7164 16 8 9.2590 -1.3303 3.7481 17 6 7.3498 0.0120 3.6259 18 6 6.3822 0.3568 4.5761 19 6 5.7312 1.5751 4.5005 20 6 6.0207 2.4586 3.4840 21 6 6.9872 2.1269 2.5161 22 6 7.2863 3.0316 1.4709 23 1 6.5276 3.7108 1.1110 24 6 8.5651 3.0464 0.9029 25 7 9.5388 2.3785 1.4662 26 14 8.8818 4.0200 -0.6596 27 1 7.6254 4.6817 -1.0939 28 1 9.9197 5.0498 -0.3993 29 1 9.3523 3.1021 -1.7280 30 6 7.6532 0.8920 2.5936 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6053 -1.7198 1.2952 39 1 1.7517 -0.1583 2.1370 40 1 3.9995 0.1675 1.1420 41 1 3.8532 -1.3940 0.3002 42 1 3.4257 -1.8275 3.0577 43 1 5.0582 -4.1809 4.8280 44 1 4.3922 -3.9357 3.1780 45 1 8.8654 -3.7814 3.1839 46 1 8.2049 -4.0479 4.8297 47 1 6.1452 -0.3302 5.3749 48 1 4.9884 1.8333 5.2408 49 1 5.5055 3.4062 3.4296 50 1 10.4254 2.3891 1.0726 51 1 8.3966 0.6284 1.8560 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078910696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:10 Heat of formation + Delta-G solvation = -44.665009 kcal Electronic energy + Delta-G solvation = -34017.322916 eV Core-core repulsion = 29814.665192 eV Total energy + Delta-G solvation = -4202.657724 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.46593 -38.67458 -37.15193 -36.97031 -35.66449 -34.14887 -33.63265 -31.23893 -30.40047 -29.44749 -28.87154 -27.28757 -27.19412 -25.25226 -24.48083 -23.07472 -21.90562 -20.96045 -20.66013 -20.02366 -19.00549 -17.85717 -17.44741 -16.68748 -16.24918 -15.73008 -15.55938 -15.38951 -15.11687 -14.86585 -14.71473 -14.56850 -14.04722 -13.83830 -13.75966 -13.56747 -13.34953 -13.04746 -12.76664 -12.70129 -12.65914 -12.42912 -12.34023 -12.23846 -12.12211 -11.77792 -11.64096 -11.48599 -11.14463 -11.07576 -10.94145 -10.72243 -10.71033 -10.68191 -10.51876 -10.37844 -10.13439 -9.72877 -9.65522 -9.22513 -9.06509 -8.78663 -8.54661 -7.97332 -7.50704 -7.39460 -6.68567 -4.37958 1.49877 1.87238 2.41658 2.80838 2.82747 2.96614 3.11004 3.15357 3.17635 3.38243 3.58501 3.96872 4.17922 4.57884 4.65140 4.71389 4.76347 4.84804 5.00561 5.01813 5.10262 5.22207 5.26342 5.33768 5.38894 5.54155 5.56848 5.58596 5.61372 5.63861 5.77641 5.85475 6.03113 6.06752 6.10160 6.11574 6.25137 6.29018 6.31974 6.41853 6.66430 6.71692 7.03704 7.08046 7.26328 7.43719 7.47432 7.70319 7.74690 7.88086 8.01039 8.22602 8.55036 8.55735 8.65349 8.88007 8.89596 10.25406 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.005830 B = 0.004897 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4801.713468 B = 5716.946486 C = 9013.698115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.124 4.124 5 C 0.121 3.879 6 N -0.731 5.731 7 C 0.507 3.493 8 O -0.488 6.488 9 C 0.113 3.887 10 H 0.117 0.883 11 C -0.069 4.069 12 S -0.270 6.270 13 C 0.168 3.832 14 N -0.604 5.604 15 C 0.598 3.402 16 O -0.528 6.528 17 C -0.108 4.108 18 C -0.230 4.230 19 C -0.094 4.094 20 C -0.214 4.214 21 C 0.107 3.893 22 C -0.459 4.459 23 H 0.078 0.922 24 C 0.072 3.928 25 N -0.792 5.792 26 Si 0.910 3.090 27 H -0.261 1.261 28 H -0.274 1.274 29 H -0.272 1.272 30 C -0.066 4.066 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.393 0.607 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.282 0.718 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 -10.086 2.397 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.162 4.162 5 C -0.003 4.003 6 N -0.385 5.385 7 C 0.290 3.710 8 O -0.359 6.359 9 C 0.003 3.997 10 H 0.134 0.866 11 C -0.218 4.218 12 S -0.045 6.045 13 C -0.065 4.065 14 N -0.342 5.342 15 C 0.389 3.611 16 O -0.403 6.403 17 C -0.112 4.112 18 C -0.250 4.250 19 C -0.112 4.112 20 C -0.234 4.234 21 C 0.105 3.895 22 C -0.489 4.489 23 H 0.097 0.903 24 C -0.146 4.146 25 N -0.417 5.417 26 Si 0.734 3.266 27 H -0.185 1.185 28 H -0.199 1.199 29 H -0.197 1.197 30 C -0.087 4.087 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.226 0.774 43 H 0.129 0.871 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.093 0.907 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.150 -10.856 1.039 17.865 hybrid contribution -0.149 1.219 0.407 1.293 sum -14.299 -9.638 1.446 17.304 Atomic orbital electron populations 1.21833 0.95250 1.01414 1.01801 1.21020 0.95485 0.96848 0.97804 1.21936 1.02275 0.95267 1.01634 1.21839 0.94603 1.00740 0.98994 1.21398 0.93235 0.98365 0.87267 1.45756 1.07017 1.61461 1.24257 1.20401 0.82511 0.80142 0.87987 1.90833 1.54479 1.47783 1.42798 1.21310 0.82771 0.96081 0.99503 0.86597 1.24558 0.99430 0.92446 1.05348 1.88284 1.03867 1.39856 1.72457 1.24095 0.97140 0.82021 1.03230 1.48280 1.03907 1.05453 1.76516 1.18853 0.86472 0.83238 0.72574 1.90733 1.13670 1.86858 1.49068 1.19188 0.99501 0.92674 0.99819 1.20193 1.03381 0.99444 1.01967 1.20316 0.98923 0.94220 0.97746 1.21053 1.05762 0.99148 0.97415 1.17542 0.89956 0.90941 0.91098 1.19565 0.96728 1.17264 1.15318 0.90340 1.25926 0.95898 0.95031 0.97764 1.69786 1.01978 1.33599 1.36307 0.86238 0.79241 0.79685 0.81423 1.18462 1.19946 1.19730 1.21303 0.99737 0.91345 0.96272 0.92687 0.92709 0.92928 0.91070 0.91519 0.92890 0.92582 0.91733 0.91193 0.90400 0.91971 0.77395 0.87122 0.86040 0.86601 0.88678 0.89621 0.89222 0.88907 0.90685 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.85 2.92 -90.62 -0.26 -1.12 16 3 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 4 C -0.12 -1.13 4.80 -26.73 -0.13 -1.26 16 5 C 0.12 1.54 5.43 -4.04 -0.02 1.52 16 6 N -0.73 -8.98 5.19 -60.29 -0.31 -9.29 16 7 C 0.51 8.23 5.43 -10.99 -0.06 8.17 16 8 O -0.49 -10.61 13.31 5.55 0.07 -10.54 16 9 C 0.11 1.57 2.49 -68.80 -0.17 1.40 16 10 H 0.12 1.46 5.85 -51.93 -0.30 1.15 16 11 C -0.07 -0.67 7.00 37.98 0.27 -0.41 16 12 S -0.27 -3.50 23.43 -107.50 -2.52 -6.02 16 13 C 0.17 2.49 7.41 60.45 0.45 2.94 16 14 N -0.60 -10.62 2.77 -170.24 -0.47 -11.09 16 15 C 0.60 13.60 6.43 -12.31 -0.08 13.52 16 16 O -0.53 -13.67 17.08 5.33 0.09 -13.58 16 17 C -0.11 -2.59 3.31 -105.04 -0.35 -2.93 16 18 C -0.23 -4.79 7.83 -38.91 -0.30 -5.10 16 19 C -0.09 -1.96 10.01 -39.72 -0.40 -2.35 16 20 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 21 C 0.11 2.84 5.54 -106.87 -0.59 2.25 16 22 C -0.46 -12.22 9.06 -37.73 -0.34 -12.56 16 23 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 24 C 0.07 1.86 5.25 -17.34 -0.09 1.77 16 25 N -0.79 -21.75 10.87 55.55 0.60 -21.15 16 26 Si 0.91 19.38 29.57 -169.99 -5.03 14.36 16 27 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 28 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 29 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 30 C -0.07 -1.80 7.30 -38.44 -0.28 -2.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.86 6.56 -51.93 -0.34 0.52 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.26 6.56 -51.93 -0.34 0.91 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.39 3.33 8.24 -40.82 -0.34 2.99 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.12 0.97 7.34 -51.93 -0.38 0.59 16 45 H 0.12 1.87 7.91 -51.93 -0.41 1.46 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.09 1.53 6.59 -52.49 -0.35 1.18 16 48 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 49 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 50 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 51 H 0.12 3.74 6.25 -52.49 -0.33 3.42 16 LS Contribution 418.82 15.07 6.31 6.31 Total: -1.00 -33.68 418.82 -11.15 -44.84 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.83 Total: 9.92 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.07 Total: -3.76 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.18 Total: -41.52 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.16 Total: -24.12 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.36 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.52 Total: -6.02 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.68 -11.15 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078910696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.171 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds