Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 117.00269 * 2 1 4 4 C 1.38754 * 120.05400 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94187 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05818 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.11222 * 0.02613 * 6 5 4 8 8 C 1.50696 * 119.97505 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47182 * 89.99815 * 8 7 6 10 10 H 1.09005 * 109.46981 * 305.00145 * 9 8 7 11 11 C 1.52996 * 109.47092 * 185.00172 * 9 8 7 12 12 N 1.46498 * 109.47088 * 65.00112 * 9 8 7 13 13 S 1.65601 * 120.00045 * 215.00025 * 12 9 8 14 14 O 1.42097 * 106.39944 * 178.54041 * 13 12 9 15 15 O 1.42100 * 106.40224 * 311.45995 * 13 12 9 16 16 C 1.76201 * 107.21579 * 65.00020 * 13 12 9 17 17 C 1.38627 * 119.75010 * 269.72251 * 16 13 12 18 18 C 1.37619 * 120.24771 * 179.72176 * 17 16 13 19 19 C 1.40714 * 119.74621 * 0.57327 * 18 17 16 20 20 C 1.41390 * 120.24820 * 179.67725 * 19 18 17 21 21 H 1.08004 * 119.99585 * 24.41584 * 20 19 18 22 22 C 1.39944 * 120.00350 * 204.41362 * 20 19 18 23 23 N 1.30817 * 120.00148 * 17.86211 * 22 20 19 24 24 Si 1.86805 * 119.99979 * 197.85745 * 22 20 19 25 25 H 1.48492 * 109.47247 * 60.00155 * 24 22 20 26 26 H 1.48501 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46949 * 300.00145 * 24 22 20 28 28 C 1.40718 * 119.51105 * 359.70742 * 19 18 17 29 29 C 1.37621 * 119.74398 * 359.97438 * 28 19 18 30 30 C 1.38170 * 120.05663 * 359.74370 * 7 6 5 31 31 H 1.09003 * 109.47225 * 59.99330 * 1 2 3 32 32 H 1.08998 * 109.47753 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46634 * 300.00088 * 1 2 3 34 34 H 1.07999 * 120.02514 * 359.95631 * 4 3 2 35 35 H 1.08002 * 119.96931 * 180.02562 * 5 4 3 36 36 H 1.07999 * 119.94247 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.47393 * 209.99903 * 8 7 6 38 38 H 1.09004 * 109.47116 * 330.00085 * 8 7 6 39 39 H 1.09001 * 109.47555 * 300.00150 * 11 9 8 40 40 H 1.08998 * 109.47506 * 60.00150 * 11 9 8 41 41 H 1.09002 * 109.46894 * 179.97438 * 11 9 8 42 42 H 0.97002 * 119.99840 * 35.00018 * 12 9 8 43 43 H 1.07995 * 119.87779 * 359.97438 * 17 16 13 44 44 H 1.08004 * 120.12746 * 180.27985 * 18 17 16 45 45 H 0.97000 * 120.00836 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.12554 * 179.97438 * 28 19 18 47 47 H 1.08000 * 119.87473 * 180.02562 * 29 28 19 48 48 H 1.07994 * 120.02896 * 180.25673 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5171 0.0011 8 6 5.5608 2.5981 0.0022 9 6 6.0690 2.6242 1.4452 10 1 5.5894 3.4410 1.9846 11 6 7.5849 2.8317 1.4483 12 7 5.7488 1.3528 2.0987 13 16 5.3518 1.3250 3.7062 14 8 5.0669 -0.0300 4.0257 15 8 6.3434 2.0899 4.3777 16 6 3.8372 2.2074 3.8846 17 6 3.8606 3.5717 4.1294 18 6 2.6837 4.2721 4.2648 19 6 1.4536 3.5960 4.1659 20 6 0.2382 4.3039 4.3100 21 1 0.2029 5.3635 4.1043 22 6 -0.9189 3.6315 4.7192 23 7 -0.8259 2.4617 5.2973 24 14 -2.5964 4.4045 4.4399 25 1 -2.8044 4.6242 2.9861 26 1 -3.6518 3.4984 4.9600 27 1 -2.6667 5.7056 5.1522 28 6 1.4420 2.2100 3.9230 29 6 2.6311 1.5311 3.7844 30 6 3.4311 1.2848 0.0053 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2129 2.3204 0.0002 35 1 1.3341 4.5114 0.0019 36 1 3.7923 4.6380 0.0024 37 1 5.9718 1.7294 -0.5121 38 1 5.8761 3.5068 -0.5105 39 1 8.0646 2.0150 0.9088 40 1 7.8231 3.7777 0.9620 41 1 7.9468 2.8507 2.4762 42 1 5.7694 0.5272 1.5899 43 1 4.8059 4.0876 4.2102 44 1 2.7042 5.3357 4.4511 45 1 -1.6279 1.9954 5.5806 46 1 0.5036 1.6811 3.8456 47 1 2.6246 0.4674 3.5975 48 1 4.0206 0.3799 0.0091 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078985428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = -84.900105 kcal Electronic energy + Delta-G solvation = -33928.565072 eV Core-core repulsion = 29653.755440 eV Total energy + Delta-G solvation = -4274.809632 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.88785 -37.92114 -37.49503 -36.50270 -35.96320 -35.04734 -33.99682 -31.66832 -30.37583 -30.19533 -29.48026 -29.40892 -27.17993 -26.13477 -25.76674 -22.27422 -21.78694 -21.44047 -21.10981 -20.53190 -18.89706 -17.61948 -17.53551 -17.08427 -16.40248 -16.03693 -15.89663 -15.57518 -15.47778 -15.39246 -14.42185 -14.31978 -14.10921 -13.73551 -13.45943 -13.34411 -13.29921 -13.15250 -12.74404 -12.41597 -12.31773 -12.13679 -12.11573 -11.89035 -11.69644 -11.65569 -11.42257 -11.33389 -11.30749 -11.19789 -11.18004 -11.09405 -10.95618 -10.83842 -10.60355 -10.51743 -10.40722 -9.73879 -9.60947 -9.45276 -9.02882 -8.46365 -7.89069 -7.85648 -7.61303 -7.10149 -4.75381 1.33972 1.65519 1.81085 2.32498 2.86980 2.87825 2.92021 2.99448 3.50656 3.65982 3.78184 4.06993 4.28577 4.59454 4.86168 5.00801 5.07741 5.14006 5.25340 5.29222 5.33607 5.39695 5.45643 5.48969 5.54149 5.63013 5.64704 5.66717 5.79091 5.87601 5.95739 6.00603 6.10494 6.19100 6.31878 6.38172 6.42528 6.61462 6.72224 6.75436 6.77375 6.89414 6.97542 7.06671 7.10806 7.37218 7.40787 7.49375 7.67995 7.70445 7.81636 8.01947 8.37442 8.56459 8.71297 9.81249 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.008782 B = 0.004524 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.685576 B = 6188.185988 C = 7539.601888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.131 3.869 4 C -0.199 4.199 5 C -0.067 4.067 6 C -0.148 4.148 7 C -0.042 4.042 8 C -0.083 4.083 9 C 0.161 3.839 10 H 0.089 0.911 11 C -0.171 4.171 12 N -1.118 6.118 13 S 2.689 3.311 14 O -0.987 6.987 15 O -0.986 6.986 16 C -0.778 4.778 17 C 0.001 3.999 18 C -0.236 4.236 19 C 0.146 3.854 20 C -0.439 4.439 21 H 0.084 0.916 22 C 0.075 3.925 23 N -0.767 5.767 24 Si 0.911 3.089 25 H -0.261 1.261 26 H -0.275 1.275 27 H -0.261 1.261 28 C -0.177 4.177 29 C -0.006 4.006 30 C -0.143 4.143 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.408 0.592 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.288 0.712 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 0.268 -12.745 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.086 3.914 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.167 4.167 7 C -0.042 4.042 8 C -0.122 4.122 9 C 0.053 3.947 10 H 0.107 0.893 11 C -0.230 4.230 12 N -0.873 5.873 13 S 2.788 3.212 14 O -0.977 6.977 15 O -0.977 6.977 16 C -0.874 4.874 17 C -0.019 4.019 18 C -0.257 4.257 19 C 0.143 3.857 20 C -0.467 4.467 21 H 0.102 0.898 22 C -0.147 4.147 23 N -0.390 5.390 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.186 1.186 28 C -0.198 4.198 29 C -0.026 4.026 30 C -0.162 4.162 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.241 0.759 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.116 0.884 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.331 -0.384 -11.856 12.628 hybrid contribution -1.902 0.470 -0.297 1.981 sum 2.430 0.086 -12.153 12.393 Atomic orbital electron populations 1.23016 0.78704 1.03507 1.01470 1.86026 1.21159 1.27237 1.88864 1.18928 0.92245 0.83996 0.96216 1.21130 0.99783 0.92506 1.08369 1.20812 0.94529 0.96894 0.96258 1.20811 0.93765 0.97601 1.04498 1.19413 0.94903 0.92314 0.97592 1.20923 0.91393 1.03403 0.96462 1.20622 0.94989 0.85841 0.93212 0.89328 1.22343 0.95501 1.01622 1.03535 1.55810 1.86556 1.14011 1.30964 1.01314 0.74656 0.73278 0.71948 1.93493 1.86395 1.35477 1.82363 1.93476 1.59292 1.72824 1.72077 1.29072 1.16034 1.06333 1.35933 1.20113 0.97131 0.91740 0.92960 1.20965 0.92496 0.98428 1.13788 1.17768 0.91952 0.92197 0.83828 1.19835 0.92708 0.96816 1.37322 0.89775 1.26075 1.01962 0.94473 0.92200 1.69825 1.32416 1.12718 1.24021 0.86297 0.79885 0.80142 0.80209 1.18490 1.19963 1.18581 1.21217 0.96424 0.95025 1.07105 1.20165 0.91851 0.96913 0.93693 1.20106 0.91130 0.97795 1.07174 0.93115 0.88651 0.92179 0.86041 0.86194 0.86389 0.90442 0.89740 0.92358 0.91812 0.90930 0.75899 0.88125 0.88525 0.90068 0.86457 0.88396 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.01 10.50 -19.45 -0.20 -5.22 16 3 C 0.13 2.11 6.69 -39.22 -0.26 1.85 16 4 C -0.20 -3.14 9.04 -39.43 -0.36 -3.50 16 5 C -0.07 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.15 -2.11 9.70 -39.56 -0.38 -2.49 16 7 C -0.04 -0.58 4.95 -104.65 -0.52 -1.09 16 8 C -0.08 -0.90 4.95 -27.88 -0.14 -1.04 16 9 C 0.16 2.06 2.76 -67.93 -0.19 1.87 16 10 H 0.09 1.26 7.23 -51.93 -0.38 0.89 16 11 C -0.17 -1.90 9.52 37.16 0.35 -1.54 16 12 N -1.12 -16.48 4.84 -4.89 -0.02 -16.51 16 13 S 2.69 52.82 5.65 -107.50 -0.61 52.21 16 14 O -0.99 -21.99 17.26 -57.17 -0.99 -22.97 16 15 O -0.99 -20.96 16.51 -57.17 -0.94 -21.90 16 16 C -0.78 -17.07 5.84 -39.29 -0.23 -17.30 16 17 C 0.00 0.02 8.88 -39.66 -0.35 -0.34 16 18 C -0.24 -5.46 9.80 -38.87 -0.38 -5.85 16 19 C 0.15 3.61 5.58 -106.83 -0.60 3.02 16 20 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 21 H 0.08 1.92 7.91 -52.48 -0.42 1.50 16 22 C 0.07 1.70 5.14 -17.35 -0.09 1.62 16 23 N -0.77 -18.31 10.95 55.55 0.61 -17.70 16 24 Si 0.91 16.82 29.60 -169.99 -5.03 11.79 16 25 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 26 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 27 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 28 C -0.18 -4.38 8.70 -38.87 -0.34 -4.71 16 29 C -0.01 -0.14 9.49 -39.66 -0.38 -0.51 16 30 C -0.14 -2.15 9.23 -39.43 -0.36 -2.51 16 31 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.80 7.66 -51.93 -0.40 0.41 16 34 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.95 7.64 -51.93 -0.40 0.55 16 42 H 0.41 5.15 8.69 -34.47 -0.30 4.85 16 43 H 0.10 2.00 7.59 -52.49 -0.40 1.60 16 44 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 45 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 46 H 0.12 2.97 6.15 -52.49 -0.32 2.65 16 47 H 0.10 2.24 7.60 -52.49 -0.40 1.84 16 48 H 0.12 1.67 7.91 -52.49 -0.42 1.25 16 LS Contribution 411.20 15.07 6.20 6.20 Total: -1.00 -30.95 411.20 -11.62 -42.56 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.66 Total: 15.05 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: -3.97 Total: -43.51 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.58 Total: -34.21 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -2.13 Total: -50.09 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.61 Total: 52.21 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.95 -11.62 -42.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078985428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.337 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds