Wall clock time and date at job start Tue Mar 31 2020 05:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00273 * 2 1 4 4 C 1.38750 * 120.06022 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.95065 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.04977 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11669 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.97265 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46992 * 90.00402 * 8 7 6 10 10 H 1.08993 * 109.47458 * 54.99979 * 9 8 7 11 11 C 1.53011 * 109.46925 * 174.99793 * 9 8 7 12 12 N 1.46496 * 109.47284 * 294.99463 * 9 8 7 13 13 S 1.65592 * 120.00294 * 145.00101 * 12 9 8 14 14 O 1.42103 * 106.40607 * 178.54415 * 13 12 9 15 15 O 1.42104 * 106.40260 * 311.46507 * 13 12 9 16 16 C 1.76200 * 107.21911 * 65.00057 * 13 12 9 17 17 C 1.38629 * 119.75318 * 269.73349 * 16 13 12 18 18 C 1.37617 * 120.24818 * 179.71689 * 17 16 13 19 19 C 1.40717 * 119.74567 * 0.57259 * 18 17 16 20 20 C 1.41396 * 120.24422 * 179.67809 * 19 18 17 21 21 H 1.08005 * 119.99812 * 24.41596 * 20 19 18 22 22 C 1.39943 * 120.00042 * 204.40867 * 20 19 18 23 23 N 1.30829 * 119.99826 * 17.85783 * 22 20 19 24 24 Si 1.86797 * 119.99897 * 197.85780 * 22 20 19 25 25 H 1.48498 * 109.47258 * 60.00398 * 24 22 20 26 26 H 1.48505 * 109.47004 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47404 * 299.99707 * 24 22 20 28 28 C 1.40710 * 119.50841 * 359.70230 * 19 18 17 29 29 C 1.37618 * 119.74945 * 359.97438 * 28 19 18 30 30 C 1.38167 * 120.05189 * 0.23599 * 7 6 5 31 31 H 1.09002 * 109.46726 * 59.99777 * 1 2 3 32 32 H 1.08999 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46783 * 300.00378 * 1 2 3 34 34 H 1.07999 * 120.02252 * 0.03925 * 4 3 2 35 35 H 1.07997 * 119.97825 * 180.02562 * 5 4 3 36 36 H 1.08006 * 119.94016 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47191 * 329.99811 * 8 7 6 38 38 H 1.09001 * 109.46841 * 210.00449 * 8 7 6 39 39 H 1.09000 * 109.47082 * 300.00029 * 11 9 8 40 40 H 1.09004 * 109.46512 * 59.99701 * 11 9 8 41 41 H 1.08998 * 109.46599 * 179.97438 * 11 9 8 42 42 H 0.97003 * 119.99678 * 325.28371 * 12 9 8 43 43 H 1.08008 * 119.87407 * 359.97424 * 17 16 13 44 44 H 1.08008 * 120.12425 * 180.27538 * 18 17 16 45 45 H 0.96996 * 119.99295 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.12448 * 179.97438 * 28 19 18 47 47 H 1.08003 * 119.87858 * 180.02562 * 29 28 19 48 48 H 1.08000 * 120.02444 * 179.74393 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6756 -0.0016 7 6 4.0562 2.5169 -0.0032 8 6 5.5610 2.5979 -0.0055 9 6 6.0724 2.6246 1.4362 10 1 5.6846 1.7605 1.9754 11 6 7.6019 2.5810 1.4355 12 7 5.6193 3.8535 2.0924 13 16 5.2254 3.8366 3.7007 14 8 4.8632 5.1683 4.0392 15 8 4.3620 2.7241 3.8907 16 6 6.7009 3.4796 4.5953 17 6 7.0327 2.1636 4.8779 18 6 8.1856 1.8728 5.5708 19 6 9.0226 2.9180 6.0034 20 6 10.2061 2.6316 6.7220 21 1 10.6842 1.6692 6.6137 22 6 10.7582 3.5952 7.5736 23 7 10.0296 4.6027 7.9808 24 14 12.5352 3.4430 8.1287 25 1 13.4277 3.4595 6.9420 26 1 12.8747 4.5814 9.0199 27 1 12.7159 2.1668 8.8663 28 6 8.6728 4.2503 5.7158 29 6 7.5185 4.5173 5.0156 30 6 3.4312 1.2846 -0.0081 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2130 2.3204 0.0016 35 1 1.3343 4.5114 0.0008 36 1 3.7925 4.6379 -0.0024 37 1 5.8751 3.5062 -0.5195 38 1 5.9707 1.7289 -0.5204 39 1 7.9391 1.6667 0.9473 40 1 7.9898 3.4452 0.8962 41 1 7.9663 2.6006 2.4626 42 1 5.5461 4.6763 1.5837 43 1 6.3861 1.3633 4.5493 44 1 8.4444 0.8466 5.7861 45 1 10.4124 5.2707 8.5707 46 1 9.3078 5.0602 6.0434 47 1 7.2482 5.5391 4.7934 48 1 4.0207 0.3797 -0.0136 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078985437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:27 Heat of formation + Delta-G solvation = -86.144133 kcal Electronic energy + Delta-G solvation = -31896.560724 eV Core-core repulsion = 27621.697147 eV Total energy + Delta-G solvation = -4274.863577 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.23714 -38.17435 -37.57856 -36.52793 -36.07983 -35.05158 -34.03068 -32.00896 -30.47739 -30.25594 -29.70635 -29.40770 -27.50218 -26.31843 -25.77206 -22.65506 -21.83011 -21.46273 -21.17617 -20.75632 -18.94640 -17.91125 -17.60533 -17.11275 -16.49721 -16.37185 -16.00329 -15.85807 -15.72222 -15.37653 -14.57721 -14.45506 -14.10661 -14.01281 -13.61967 -13.50898 -13.38358 -13.18005 -12.81874 -12.59523 -12.47014 -12.24864 -12.16312 -12.08746 -11.81419 -11.69572 -11.47939 -11.40421 -11.37529 -11.26675 -11.23284 -11.18657 -11.07259 -10.89708 -10.84597 -10.64987 -10.43014 -9.74820 -9.64651 -9.46507 -9.10768 -8.76439 -8.22902 -7.93868 -7.68337 -7.12774 -4.78858 1.26853 1.32765 1.43969 2.27887 2.88195 2.89744 2.92903 2.94942 3.14905 3.66379 3.71272 3.77170 4.26146 4.56818 4.66296 4.70524 4.89671 4.95031 4.96631 5.02075 5.09402 5.23887 5.25828 5.29329 5.37663 5.39697 5.48248 5.56514 5.71119 5.72547 5.84172 5.99246 6.05992 6.08717 6.14211 6.24126 6.36352 6.41015 6.55930 6.61226 6.69473 6.71880 6.72562 6.93860 7.05999 7.31761 7.33763 7.37651 7.44886 7.65581 7.77940 7.98203 8.33221 8.52529 8.66305 9.78713 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002179 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.372645 B =12848.622917 C =13030.114612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.214 4.214 5 C -0.080 4.080 6 C -0.151 4.151 7 C -0.036 4.036 8 C -0.085 4.085 9 C 0.159 3.841 10 H 0.091 0.909 11 C -0.177 4.177 12 N -1.119 6.119 13 S 2.691 3.309 14 O -0.987 6.987 15 O -0.983 6.983 16 C -0.785 4.785 17 C 0.002 3.998 18 C -0.238 4.238 19 C 0.140 3.860 20 C -0.437 4.437 21 H 0.087 0.913 22 C 0.072 3.928 23 N -0.765 5.765 24 Si 0.917 3.083 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.261 1.261 28 C -0.184 4.184 29 C -0.013 4.013 30 C -0.146 4.146 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.408 0.592 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.290 0.710 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -3.089 -15.882 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.169 4.169 7 C -0.036 4.036 8 C -0.124 4.124 9 C 0.052 3.948 10 H 0.109 0.891 11 C -0.236 4.236 12 N -0.874 5.874 13 S 2.790 3.210 14 O -0.978 6.978 15 O -0.973 6.973 16 C -0.881 4.881 17 C -0.018 4.018 18 C -0.259 4.259 19 C 0.137 3.863 20 C -0.464 4.464 21 H 0.105 0.895 22 C -0.150 4.150 23 N -0.387 5.387 24 Si 0.740 3.260 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.186 1.186 28 C -0.205 4.205 29 C -0.034 4.034 30 C -0.165 4.165 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.240 0.760 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.139 0.861 47 H 0.120 0.880 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.737 -3.087 -15.298 18.395 hybrid contribution 1.115 0.413 0.379 1.248 sum -8.622 -2.674 -14.919 17.438 Atomic orbital electron populations 1.23032 0.78603 1.03777 1.01288 1.86060 1.21233 1.27105 1.88811 1.18976 0.92334 0.84040 0.96318 1.21175 0.99824 0.92529 1.09754 1.20914 0.94691 0.96943 0.97286 1.20955 0.93692 0.98069 1.04170 1.19604 0.95598 0.92181 0.96190 1.20968 0.90647 1.03847 0.96920 1.20653 0.94292 0.87098 0.92769 0.89071 1.22409 0.94744 1.01880 1.04534 1.55792 1.85358 1.17030 1.29247 1.01273 0.74866 0.72797 0.72110 1.93488 1.83593 1.38068 1.82627 1.93491 1.64434 1.54293 1.85065 1.29152 1.26583 1.00624 1.31776 1.20139 0.94808 0.93156 0.93709 1.21011 0.97318 0.97898 1.09648 1.17833 0.90294 0.91679 0.86536 1.19896 1.06515 1.00497 1.19470 0.89521 1.26139 1.00275 0.93913 0.94709 1.69822 1.37026 1.09371 1.22515 0.86203 0.81081 0.79253 0.79441 1.18381 1.19932 1.18574 1.21333 0.98343 0.97310 1.03471 1.20237 0.93268 0.95564 0.94293 1.20281 0.91300 0.98244 1.06648 0.92854 0.88360 0.92585 0.85778 0.85882 0.85978 0.90010 0.89474 0.91897 0.92199 0.90144 0.75957 0.87934 0.88264 0.89911 0.86068 0.88008 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.87 10.50 -19.40 -0.20 -4.07 16 3 C 0.13 1.66 6.69 -39.21 -0.26 1.40 16 4 C -0.21 -2.50 9.04 -39.44 -0.36 -2.86 16 5 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.15 -1.78 9.30 -39.56 -0.37 -2.15 16 7 C -0.04 -0.43 4.95 -104.65 -0.52 -0.95 16 8 C -0.09 -0.86 4.95 -27.89 -0.14 -1.00 16 9 C 0.16 2.04 2.90 -67.93 -0.20 1.84 16 10 H 0.09 1.30 7.50 -51.93 -0.39 0.91 16 11 C -0.18 -2.20 9.52 37.16 0.35 -1.85 16 12 N -1.12 -16.15 4.85 -4.89 -0.02 -16.17 16 13 S 2.69 52.47 5.71 -107.50 -0.61 51.85 16 14 O -0.99 -21.61 17.26 -57.17 -0.99 -22.60 16 15 O -0.98 -21.36 16.59 -57.17 -0.95 -22.31 16 16 C -0.79 -17.05 5.08 -39.29 -0.20 -17.25 16 17 C 0.00 0.04 8.57 -39.66 -0.34 -0.30 16 18 C -0.24 -5.52 9.80 -38.87 -0.38 -5.90 16 19 C 0.14 3.50 5.58 -106.83 -0.60 2.91 16 20 C -0.44 -10.60 9.05 -37.74 -0.34 -10.94 16 21 H 0.09 1.98 7.91 -52.48 -0.41 1.56 16 22 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 23 N -0.77 -18.37 10.95 55.55 0.61 -17.76 16 24 Si 0.92 16.96 29.59 -169.99 -5.03 11.93 16 25 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 26 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 27 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 28 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 16 29 C -0.01 -0.31 9.49 -39.66 -0.38 -0.68 16 30 C -0.15 -1.87 9.64 -39.43 -0.38 -2.26 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.21 7.93 -52.48 -0.42 0.80 16 37 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.24 6.18 -51.93 -0.32 0.92 16 42 H 0.41 4.87 8.70 -34.46 -0.30 4.57 16 43 H 0.10 2.04 7.59 -52.48 -0.40 1.64 16 44 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 45 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 46 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 47 H 0.10 2.20 7.60 -52.48 -0.40 1.80 16 48 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -31.77 409.27 -11.56 -43.33 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.60 Total: 13.05 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: -3.93 Total: -43.41 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.58 Total: -33.93 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -2.14 Total: -48.99 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 52.47 SS G_CDS: -0.61 Total: 51.85 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.77 -11.56 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078985437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.811 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds