Wall clock time and date at job start Tue Mar 31 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00273 * 2 1 4 4 C 1.38750 * 120.06022 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.95065 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.04977 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11669 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.97265 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46992 * 90.00402 * 8 7 6 10 10 H 1.08993 * 109.47458 * 54.99979 * 9 8 7 11 11 C 1.53011 * 109.46925 * 174.99793 * 9 8 7 12 12 N 1.46496 * 109.47284 * 294.99463 * 9 8 7 13 13 S 1.65592 * 120.00294 * 145.00101 * 12 9 8 14 14 O 1.42103 * 106.40607 * 178.54415 * 13 12 9 15 15 O 1.42104 * 106.40260 * 311.46507 * 13 12 9 16 16 C 1.76200 * 107.21911 * 65.00057 * 13 12 9 17 17 C 1.38629 * 119.75318 * 269.73349 * 16 13 12 18 18 C 1.37617 * 120.24818 * 179.71689 * 17 16 13 19 19 C 1.40717 * 119.74567 * 0.57259 * 18 17 16 20 20 C 1.41396 * 120.24422 * 179.67809 * 19 18 17 21 21 H 1.08005 * 119.99812 * 24.41596 * 20 19 18 22 22 C 1.39943 * 120.00042 * 204.40867 * 20 19 18 23 23 N 1.30829 * 119.99826 * 17.85783 * 22 20 19 24 24 Si 1.86797 * 119.99897 * 197.85780 * 22 20 19 25 25 H 1.48498 * 109.47258 * 60.00398 * 24 22 20 26 26 H 1.48505 * 109.47004 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47404 * 299.99707 * 24 22 20 28 28 C 1.40710 * 119.50841 * 359.70230 * 19 18 17 29 29 C 1.37618 * 119.74945 * 359.97438 * 28 19 18 30 30 C 1.38167 * 120.05189 * 0.23599 * 7 6 5 31 31 H 1.09002 * 109.46726 * 59.99777 * 1 2 3 32 32 H 1.08999 * 109.47574 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46783 * 300.00378 * 1 2 3 34 34 H 1.07999 * 120.02252 * 0.03925 * 4 3 2 35 35 H 1.07997 * 119.97825 * 180.02562 * 5 4 3 36 36 H 1.08006 * 119.94016 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47191 * 329.99811 * 8 7 6 38 38 H 1.09001 * 109.46841 * 210.00449 * 8 7 6 39 39 H 1.09000 * 109.47082 * 300.00029 * 11 9 8 40 40 H 1.09004 * 109.46512 * 59.99701 * 11 9 8 41 41 H 1.08998 * 109.46599 * 179.97438 * 11 9 8 42 42 H 0.97003 * 119.99678 * 325.28371 * 12 9 8 43 43 H 1.08008 * 119.87407 * 359.97424 * 17 16 13 44 44 H 1.08008 * 120.12425 * 180.27538 * 18 17 16 45 45 H 0.96996 * 119.99295 * 180.02562 * 23 22 20 46 46 H 1.08006 * 120.12448 * 179.97438 * 28 19 18 47 47 H 1.08003 * 119.87858 * 180.02562 * 29 28 19 48 48 H 1.08000 * 120.02444 * 179.74393 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6756 -0.0016 7 6 4.0562 2.5169 -0.0032 8 6 5.5610 2.5979 -0.0055 9 6 6.0724 2.6246 1.4362 10 1 5.6846 1.7605 1.9754 11 6 7.6019 2.5810 1.4355 12 7 5.6193 3.8535 2.0924 13 16 5.2254 3.8366 3.7007 14 8 4.8632 5.1683 4.0392 15 8 4.3620 2.7241 3.8907 16 6 6.7009 3.4796 4.5953 17 6 7.0327 2.1636 4.8779 18 6 8.1856 1.8728 5.5708 19 6 9.0226 2.9180 6.0034 20 6 10.2061 2.6316 6.7220 21 1 10.6842 1.6692 6.6137 22 6 10.7582 3.5952 7.5736 23 7 10.0296 4.6027 7.9808 24 14 12.5352 3.4430 8.1287 25 1 13.4277 3.4595 6.9420 26 1 12.8747 4.5814 9.0199 27 1 12.7159 2.1668 8.8663 28 6 8.6728 4.2503 5.7158 29 6 7.5185 4.5173 5.0156 30 6 3.4312 1.2846 -0.0081 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2130 2.3204 0.0016 35 1 1.3343 4.5114 0.0008 36 1 3.7925 4.6379 -0.0024 37 1 5.8751 3.5062 -0.5195 38 1 5.9707 1.7289 -0.5204 39 1 7.9391 1.6667 0.9473 40 1 7.9898 3.4452 0.8962 41 1 7.9663 2.6006 2.4626 42 1 5.5461 4.6763 1.5837 43 1 6.3861 1.3633 4.5493 44 1 8.4444 0.8466 5.7861 45 1 10.4124 5.2707 8.5707 46 1 9.3078 5.0602 6.0434 47 1 7.2482 5.5391 4.7934 48 1 4.0207 0.3797 -0.0136 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078985437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:26 Heat of formation + Delta-G solvation = -105.270928 kcal Electronic energy + Delta-G solvation = -31897.390124 eV Core-core repulsion = 27621.697147 eV Total energy + Delta-G solvation = -4275.692977 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.07546 -39.39555 -39.05061 -38.11317 -37.18590 -36.75011 -35.78880 -32.96462 -32.05308 -31.32870 -31.29787 -30.70385 -28.22213 -27.61472 -27.11044 -23.53074 -23.27824 -22.96124 -22.76456 -21.70308 -20.42330 -19.40883 -18.87918 -18.57412 -18.07544 -17.34049 -17.15270 -16.88460 -16.77718 -16.61148 -16.07130 -15.77275 -15.33808 -15.18628 -14.99347 -14.86504 -14.50153 -14.39114 -14.12232 -13.96969 -13.84828 -13.59019 -13.38158 -13.25674 -13.08332 -13.00151 -12.91307 -12.87778 -12.85485 -12.59666 -12.53144 -12.44336 -12.18356 -12.08331 -12.00370 -11.75133 -11.60469 -11.51726 -11.32701 -11.16830 -10.39095 -9.76803 -9.66824 -9.51218 -9.10144 -8.85605 -6.62845 -0.26059 0.40731 0.51401 0.54690 1.08283 1.36247 1.44951 1.50684 2.11848 2.28837 2.40643 2.56852 2.82984 2.97732 3.55177 3.63405 3.79942 3.91960 4.02340 4.16593 4.25198 4.31791 4.33492 4.34888 4.38334 4.41038 4.49677 4.56658 4.61575 4.68501 4.72516 4.89246 4.90632 4.96211 5.03144 5.05446 5.13266 5.17268 5.26246 5.35470 5.39914 5.51683 5.54495 5.55214 5.62054 5.73245 5.79504 5.89581 5.95048 6.17745 6.29748 6.49583 6.51305 6.70486 6.83389 8.09345 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002179 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.372645 B =12848.622917 C =13030.114612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.223 4.223 5 C -0.091 4.091 6 C -0.165 4.165 7 C -0.045 4.045 8 C -0.077 4.077 9 C 0.156 3.844 10 H 0.076 0.924 11 C -0.174 4.174 12 N -1.101 6.101 13 S 2.719 3.281 14 O -1.010 7.010 15 O -1.003 7.003 16 C -0.790 4.790 17 C 0.004 3.996 18 C -0.253 4.253 19 C 0.114 3.886 20 C -0.466 4.466 21 H 0.093 0.907 22 C 0.033 3.967 23 N -0.800 5.800 24 Si 0.992 3.008 25 H -0.255 1.255 26 H -0.267 1.267 27 H -0.255 1.255 28 C -0.207 4.207 29 C -0.018 4.018 30 C -0.168 4.168 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.423 0.577 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.298 0.702 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 -3.138 -17.423 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.064 3.936 4 C -0.241 4.241 5 C -0.109 4.109 6 C -0.183 4.183 7 C -0.045 4.045 8 C -0.115 4.115 9 C 0.050 3.950 10 H 0.094 0.906 11 C -0.233 4.233 12 N -0.862 5.862 13 S 2.814 3.186 14 O -1.001 7.001 15 O -0.993 6.993 16 C -0.883 4.883 17 C -0.016 4.016 18 C -0.274 4.274 19 C 0.110 3.890 20 C -0.493 4.493 21 H 0.111 0.889 22 C -0.186 4.186 23 N -0.423 5.423 24 Si 0.811 3.189 25 H -0.179 1.179 26 H -0.191 1.191 27 H -0.179 1.179 28 C -0.227 4.227 29 C -0.038 4.038 30 C -0.186 4.186 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.259 0.741 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.622 -3.137 -16.831 19.639 hybrid contribution 0.903 0.400 0.748 1.239 sum -8.718 -2.737 -16.083 18.497 Atomic orbital electron populations 1.23308 0.76707 1.05456 1.02031 1.86027 1.23328 1.27104 1.88846 1.19259 0.92814 0.84735 0.96789 1.21472 1.00960 0.92340 1.09377 1.21289 0.95107 0.97753 0.96760 1.21300 0.94128 0.98828 1.04052 1.19840 0.96604 0.92005 0.96058 1.20971 0.89462 1.06106 0.94997 1.20822 0.94616 0.85447 0.94160 0.90600 1.22374 0.94218 1.03826 1.02902 1.55322 1.85028 1.18681 1.27150 1.00396 0.73645 0.71653 0.72877 1.93451 1.83749 1.39106 1.83782 1.93468 1.64742 1.55108 1.86003 1.29558 1.26792 1.00267 1.31688 1.20350 0.94525 0.93817 0.92918 1.21218 0.97781 0.98198 1.10155 1.18167 0.91236 0.92184 0.87393 1.20195 1.07132 1.01550 1.20440 0.88929 1.27039 1.04379 0.93050 0.94139 1.69868 1.39010 1.10237 1.23195 0.85093 0.75249 0.79503 0.79071 1.17881 1.19087 1.17941 1.21338 0.99303 0.97223 1.04876 1.20404 0.93010 0.96514 0.93909 1.20554 0.91754 0.98947 1.07392 0.91406 0.86342 0.92469 0.83892 0.83790 0.84244 0.87692 0.87285 0.89663 0.90702 0.93445 0.74055 0.86174 0.87163 0.89127 0.87280 0.87045 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.05 10.50 -92.34 -0.97 -9.02 16 3 C 0.11 2.75 6.69 22.51 0.15 2.90 16 4 C -0.22 -4.93 9.04 22.36 0.20 -4.73 16 5 C -0.09 -1.94 10.04 22.25 0.22 -1.71 16 6 C -0.16 -3.56 9.30 22.28 0.21 -3.35 16 7 C -0.04 -1.00 4.95 -19.88 -0.10 -1.10 16 8 C -0.08 -1.34 4.95 29.85 0.15 -1.19 16 9 C 0.16 3.69 2.90 45.00 0.13 3.82 16 10 H 0.08 2.07 7.50 -2.39 -0.02 2.05 16 11 C -0.17 -4.00 9.52 71.99 0.69 -3.32 16 12 N -1.10 -29.85 4.85 -169.39 -0.82 -30.68 16 13 S 2.72 103.94 5.71 -56.49 -0.32 103.62 16 14 O -1.01 -43.46 17.26 -128.00 -2.21 -45.67 16 15 O -1.00 -42.95 16.59 -128.00 -2.12 -45.08 16 16 C -0.79 -34.39 5.08 22.46 0.11 -34.28 16 17 C 0.00 0.16 8.57 22.22 0.19 0.35 16 18 C -0.25 -11.95 9.80 22.73 0.22 -11.73 16 19 C 0.11 5.85 5.58 -21.29 -0.12 5.73 16 20 C -0.47 -23.16 9.05 23.46 0.21 -22.95 16 21 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 22 C 0.03 1.54 5.14 85.26 0.44 1.98 16 23 N -0.80 -39.29 10.95 21.83 0.24 -39.05 16 24 Si 0.99 34.56 29.59 68.60 2.03 36.59 16 25 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 26 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16 27 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 28 C -0.21 -10.61 8.70 22.73 0.20 -10.41 16 29 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 30 C -0.17 -4.16 9.64 22.37 0.22 -3.95 16 31 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 32 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 34 H 0.14 2.43 6.30 -2.91 -0.02 2.41 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.14 2.38 7.93 -2.91 -0.02 2.36 16 37 H 0.10 1.37 8.08 -2.39 -0.02 1.35 16 38 H 0.11 1.47 8.08 -2.39 -0.02 1.45 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.05 1.43 6.18 -2.39 -0.01 1.41 16 42 H 0.42 9.06 8.70 -96.75 -0.84 8.22 16 43 H 0.12 4.75 7.59 -2.91 -0.02 4.73 16 44 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 45 H 0.30 13.07 8.30 -92.71 -0.77 12.30 16 46 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 47 H 0.11 4.88 7.60 -2.91 -0.02 4.86 16 48 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -69.91 409.27 0.41 -69.50 By element: Atomic # 1 Polarization: 42.83 SS G_CDS: 0.15 Total: 42.97 kcal Atomic # 6 Polarization: -87.63 SS G_CDS: 4.44 Total: -83.19 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.58 Total: -69.72 kcal Atomic # 8 Polarization: -94.47 SS G_CDS: -5.30 Total: -99.77 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 16 Polarization: 103.94 SS G_CDS: -0.32 Total: 103.62 kcal Total: -69.91 0.41 -69.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078985437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.771 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds