Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47223 * 2 1 4 4 C 1.36048 * 117.00023 * 180.02562 * 3 2 1 5 5 C 1.38571 * 120.07261 * 270.23681 * 4 3 2 6 6 Br 1.89104 * 119.99336 * 0.04513 * 5 4 3 7 7 C 1.38349 * 120.01800 * 180.27448 * 5 4 3 8 8 C 1.38363 * 120.15362 * 359.74709 * 7 5 4 9 9 Cl 1.73603 * 119.93151 * 180.02562 * 8 7 5 10 10 C 1.38314 * 120.13834 * 0.02562 * 8 7 5 11 11 C 1.38742 * 119.98544 * 359.97438 * 10 8 7 12 12 N 1.39966 * 120.07579 * 179.97438 * 11 10 8 13 13 C 1.46499 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.47600 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00019 * 21 19 17 25 25 H 1.09000 * 109.46535 * 299.99584 * 1 2 3 26 26 H 1.09001 * 109.47378 * 59.99386 * 1 2 3 27 27 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46950 * 240.00758 * 2 1 3 29 29 H 1.09001 * 109.47378 * 120.00614 * 2 1 3 30 30 H 1.07999 * 119.92550 * 179.76795 * 7 5 4 31 31 H 1.08007 * 120.00693 * 180.02562 * 10 8 7 32 32 H 0.97000 * 119.99452 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.47391 * 59.99748 * 13 12 11 34 34 H 1.09001 * 109.46813 * 299.99805 * 13 12 11 35 35 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 36 36 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3551 1.5255 -0.0005 5 6 4.0447 1.6114 1.1984 6 35 3.1109 1.4796 2.8375 7 6 5.4155 1.7984 1.1965 8 6 6.1022 1.8948 -0.0008 9 17 7.8224 2.1287 0.0036 10 6 5.4210 1.8053 -1.2012 11 6 4.0463 1.6178 -1.2061 12 7 3.3550 1.5275 -2.4198 13 6 4.0830 1.6303 -3.6869 14 6 3.1147 1.5015 -4.8344 15 8 1.9327 1.3401 -4.6153 16 7 3.5620 1.5666 -6.1042 17 6 2.6810 1.4499 -7.1481 18 1 1.6286 1.3054 -6.9530 19 6 3.1422 1.5164 -8.4571 20 7 4.4228 1.6917 -8.6945 21 14 1.9418 1.3581 -9.8795 22 1 0.9328 2.4446 -9.7989 23 1 2.6796 1.4627 -11.1640 24 1 1.2585 0.0417 -9.8064 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9509 1.8688 2.1318 31 1 5.9592 1.8804 -2.1346 32 1 2.3939 1.3961 -2.4218 33 1 4.8240 0.8331 -3.7460 34 1 4.5841 2.5968 -3.7406 35 1 4.5072 1.6959 -6.2793 36 1 4.7447 1.7386 -9.6083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -54.861149 kcal Electronic energy + Delta-G solvation = -23163.269704 eV Core-core repulsion = 19333.766317 eV Total energy + Delta-G solvation = -3829.503387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 375.998 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39808 -38.52320 -37.77505 -36.53859 -35.33265 -34.07173 -32.10196 -31.62557 -31.40975 -29.48211 -28.91745 -26.88031 -24.58205 -23.35402 -22.29652 -21.86574 -19.58674 -18.42103 -18.06792 -17.47815 -16.73428 -15.84648 -15.42570 -15.11835 -14.99004 -14.77215 -14.55648 -14.41883 -13.97179 -13.63752 -13.58733 -13.02124 -12.58870 -12.55183 -12.43427 -12.11544 -11.95394 -11.68992 -11.58090 -11.46026 -11.20103 -11.14541 -10.97696 -10.55711 -10.42207 -10.37271 -9.94832 -9.87992 -9.68866 -8.73377 -8.72367 -8.17859 -7.49382 -6.58505 -4.00659 0.70833 1.14400 1.32683 1.99909 3.08632 3.10280 3.17559 3.20242 3.36897 3.63675 3.68270 4.05865 4.71814 4.86067 4.87703 4.99134 5.04216 5.08829 5.09487 5.13976 5.31384 5.43834 5.54405 5.72654 5.73444 5.79973 5.89211 5.97732 5.98694 6.08174 6.18248 7.02028 7.39376 7.40813 7.78728 7.87837 8.37215 8.97712 9.30504 9.78467 10.58191 Molecular weight = 376.00amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.002549 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.094624 B =10982.875642 C =13062.507259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.316 6.316 4 C 0.045 3.955 5 C -0.050 4.050 6 Br -0.033 7.033 7 C -0.144 4.144 8 C 0.019 3.981 9 Cl -0.061 7.061 10 C -0.176 4.176 11 C 0.234 3.766 12 N -0.706 5.706 13 C 0.107 3.893 14 C 0.427 3.573 15 O -0.593 6.593 16 N -0.547 5.547 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.395 0.605 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -1.656 21.710 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.233 6.233 4 C -0.006 4.006 5 C -0.131 4.131 6 Br 0.052 6.948 7 C -0.168 4.168 8 C -0.009 4.009 9 Cl -0.032 7.032 10 C -0.201 4.201 11 C 0.123 3.877 12 N -0.335 5.335 13 C -0.021 4.021 14 C 0.213 3.787 15 O -0.479 6.479 16 N -0.182 5.182 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.176 4.176 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.260 0.740 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.214 -1.634 22.023 22.194 hybrid contribution 0.326 -0.134 -1.306 1.352 sum 2.541 -1.769 20.717 20.947 Atomic orbital electron populations 1.21734 0.92865 1.02533 1.03523 1.22807 0.95903 0.82363 1.00787 1.86184 1.16040 1.27134 1.93925 1.17725 0.84355 1.08973 0.89536 1.21739 0.94098 1.06137 0.91122 1.96692 1.76343 1.97011 1.24737 1.20502 0.91532 1.07027 0.97689 1.20426 0.84921 1.01698 0.93887 1.98378 1.10804 1.95148 1.98917 1.20540 0.92070 1.09334 0.98126 1.17833 0.90668 0.93303 0.85875 1.44576 1.11229 1.76855 1.00856 1.21087 0.95022 1.02264 0.83747 1.19614 0.89051 0.86052 0.84022 1.90522 1.17059 1.56321 1.83966 1.41776 1.10897 1.61647 1.03910 1.19681 0.92473 1.47429 0.83985 0.87715 1.25316 0.96703 0.96631 0.98916 1.69597 1.13173 1.48439 1.22260 0.85871 0.79622 0.79234 0.79269 1.19713 1.20796 1.19732 0.91709 0.91228 0.90765 0.92749 0.92795 0.84151 0.83761 0.73992 0.90200 0.90098 0.77106 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.67 6.78 37.16 0.25 0.92 16 3 O -0.32 -4.44 8.63 -19.89 -0.17 -4.62 16 4 C 0.05 0.63 5.73 -39.08 -0.22 0.40 16 5 C -0.05 -0.62 6.23 -39.42 -0.25 -0.86 16 6 Br -0.03 -0.37 33.11 -68.01 -2.25 -2.62 16 7 C -0.14 -1.63 9.56 -39.49 -0.38 -2.01 16 8 C 0.02 0.22 6.32 -39.51 -0.25 -0.03 16 9 Cl -0.06 -0.64 28.95 -51.86 -1.50 -2.15 16 10 C -0.18 -2.22 9.09 -39.37 -0.36 -2.58 16 11 C 0.23 3.31 6.67 -83.57 -0.56 2.76 16 12 N -0.71 -11.25 5.70 -59.67 -0.34 -11.59 16 13 C 0.11 1.74 5.40 -5.19 -0.03 1.71 16 14 C 0.43 9.36 7.85 -10.98 -0.09 9.28 16 15 O -0.59 -14.96 15.24 5.55 0.08 -14.87 16 16 N -0.55 -12.98 5.29 -10.96 -0.06 -13.04 16 17 C -0.31 -8.12 9.68 -14.94 -0.14 -8.26 16 18 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 19 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 20 N -0.89 -23.18 13.05 55.50 0.72 -22.45 16 21 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.67 6.74 -52.48 -0.35 1.32 16 32 H 0.42 7.40 6.80 -40.82 -0.28 7.13 16 33 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 34 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 35 H 0.40 8.87 7.90 -40.82 -0.32 8.55 16 36 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -28.20 351.48 -8.80 -37.00 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -3.82 Total: 13.17 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.73 Total: 0.75 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.33 Total: -47.08 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.09 Total: -19.49 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.25 Total: -2.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.20 -8.80 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.860 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds